当前解析结果
SmilChr02G004459| 统一新 Gene ID | SmilChr02G004459 |
|---|---|
| 名称 | SmilChr02G004459 |
| 描述 | uncharacterized SmilChr02G004459 |
| 染色体 / SeqID | Chr02 / NC_080388.1 |
| 坐标与链方向 | 66989070 - 67015879 / - |
| NCBI Gene ID | LOC131012021 |
|---|---|
| GeneID | 131012021 |
| locus_tag | - |
| NCBI Name | LOC131012021 |
| 原始查询 | SmilChr02G004459 |
| 来源 | GFF basic annotation; NCBI GO GAF; Pfam-A/HMMER; Arabidopsis/Rice homolog |
|---|---|
| 描述 | OsWAK85; symbol=OsWAK85; hit=Os09g0471800; species=rice; confidence=low |
| 产物 | OsWAK85; symbol=OsWAK85; hit=Os09g0471800; species=rice; confidence=low |
| Arabidopsis | AT1G21270 (WAK2)wall-associated kinase 2 [Source:NCBI gene (formerly Entrezgene);Acc:838723] identity=30.1; qcov=0.495; evalue=2.76e-27; confidence=low |
| Rice | Os09g0471800 (OsWAK85)- identity=31.2; qcov=0.408; evalue=6.99e-33; confidence=low |
| GO | GO:0005509 (calcium ion binding); GO:0030247 (polysaccharide binding) |
| KEGG | - |
| Pfam | PF00008 (EGF); PF07645 (EGF_CA); PF12947 (EGF_3); PF13947 (GUB_WAK_bind) |
| InterPro | - |
| eggNOG | - |
| NR | GeneID:131012021 |
| Rank | 定位位置 | 中文 | Score | Protein ID |
|---|---|---|---|---|
| 1 | Cell membrane | 细胞膜 | 1.00000 | XP_057795909.1 |
| 2 | Nucleus | 细胞核 | 0.00000 | XP_057795909.1 |
| 3 | Chromosome | 染色体 | 0.00000 | XP_057795909.1 |
| 4 | Centromere | 着丝粒 | 0.00000 | XP_057795909.1 |
| 5 | Chromatin | 染色质 | 0.00000 | XP_057795909.1 |
下表显示该基因在丹参 EMS 材料中的前 12 个候选突变；完整结果可进入 EMS 突变库继续筛选或下载。
| 位置 | REF | ALT | 类型 | 影响 | 携带材料数 | 材料 |
|---|---|---|---|---|---|---|
Chr2:66989242 |
C |
T |
EMS_canonical_SNV | CDS_variant | 5 | B1,B118,C31,C32,C68 |
Chr2:66989263 |
C |
T |
EMS_canonical_SNV | CDS_variant | 1 | B140 |
Chr2:66989339 |
C |
T |
EMS_canonical_SNV | CDS_variant | 3 | A7,B139,D1 |
Chr2:66989389 |
G |
A |
EMS_canonical_SNV | CDS_variant | 3 | B115,C45,C83 |
Chr2:66989764 |
GAC |
G |
2bp_deletion | frameshift_variant | 1 | B140 |
Chr2:66989764 |
GAC |
G |
2bp_deletion | CDS_variant | 1 | B140 |
Chr2:66989841 |
G |
A |
EMS_canonical_SNV | CDS_variant | 2 | A11,A3 |
Chr2:66989881 |
C |
T |
EMS_canonical_SNV | CDS_variant | 1 | B137 |
Chr2:66990000 |
G |
A |
EMS_canonical_SNV | CDS_variant | 3 | C64,C66,D6 |
Chr2:66990179 |
G |
A |
EMS_canonical_SNV | CDS_variant | 1 | B69 |
Chr2:66990186 |
G |
A |
EMS_canonical_SNV | CDS_variant | 2 | B130,B137 |
Chr2:66990254 |
G |
A |
EMS_canonical_SNV | CDS_variant | 4 | B42,B43,C24,C26 |
结构域结果来自 Pfam-A HMM 数据库和 HMMER hmmscan；位置为对应蛋白序列上的氨基酸坐标。
XP_057795909.1PF13947
GUB_WAK_bind 39-93 aa
PF13947
GUB_WAK_bind 332-386 aa
PF07645
EGF_CA 617-661 aa
PF00008
EGF 626-653 aa
PF12947
EGF_3 626-655 aa
| Protein ID | 来源 | 结构域编号 | 结构域名称 | 类型 | 起始 aa | 终止 aa | E-value | Score | 说明 |
|---|---|---|---|---|---|---|---|---|---|
XP_057795909.1 |
Pfam | PF13947 |
GUB_WAK_bind | Domain | 39 | 93 | 1.5e-19 | 70.8 | Wall-associated receptor kinase galacturonan-binding |
XP_057795909.1 |
Pfam | PF13947 |
GUB_WAK_bind | Domain | 332 | 386 | 1.5e-19 | 70.8 | Wall-associated receptor kinase galacturonan-binding |
XP_057795909.1 |
Pfam | PF07645 |
EGF_CA | Domain | 617 | 661 | 1e-11 | 45.6 | Calcium-binding EGF domain |
XP_057795909.1 |
Pfam | PF00008 |
EGF | Domain | 626 | 653 | 2.3e-11 | 44.5 | EGF-like domain |
XP_057795909.1 |
Pfam | PF12947 |
EGF_3 | Domain | 626 | 655 | 1.2e-07 | 32.5 | EGF domain |
每个公开基因均提供参考注释对应的转录本序列；蛋白编码基因另提供 CDS 和蛋白序列。非编码 RNA 不适用 CDS 或蛋白下载。真实 accession 的版本后缀予以保留。
1 records
下载 cDNA FASTA1 records
下载 CDS FASTA1 records
下载 Protein FASTAupstream/downstream 最大各 10000 bp。负链基因会自动反向互补，使最终 FASTA 为转录方向 5′→3′。