Gene Card 基因详情

支持统一新 ID、NCBI Gene ID、GeneID、locus_tag、Transcript ID、Protein ID，以及已人工核对的文献基因名查询。页面会先解析到丹参统一基因，再整合坐标、序列、注释、亚细胞定位、EMS 突变和下载入口。

当前解析结果

`SmilChr02G004472`

染色体: Chr02 坐标: 67107162-67112851 链方向: + 类型: protein_coding

基本信息

统一新 Gene ID	`SmilChr02G004472`
名称	SmilChr02G004472
描述	peroxisome biogenesis protein 2
染色体 / SeqID	Chr02 / NC_080388.1
坐标与链方向	67107162 - 67112851 / `+`

ID 对照

NCBI Gene ID	`LOC131007758`
GeneID	`131007758`
locus_tag	`-`
NCBI Name	`LOC131007758`
原始查询	`SmilChr02G004472`

查看完整 ID 对照表

功能注释

来源	GFF basic annotation; NCBI GO GAF; KEGG smil; Pfam-A/HMMER; Arabidopsis/Rice homolog
描述	peroxisome biogenesis protein 2
产物	peroxisome biogenesis protein 2
Arabidopsis	`AT1G79810` (TED3) Pex2/Pex12 N-terminal domain-containing protein / zinc finger (C3HC4-type RING finger) family protein [Source:NCBI gene (formerly Entrezgene);Acc:844320] identity=75.4; qcov=0.937; evalue=3.51e-178; confidence=high
Rice	`Os05g0275700` (OsRFPHC-15) - identity=74.8; qcov=0.925; evalue=8.39e-175; confidence=high
GO	GO:0005778 (peroxisomal membrane); GO:0008270 (zinc ion binding); GO:0016558 (protein import into peroxisome matrix)
KEGG	smil04146 (Peroxisome - Salvia miltiorrhiza (redroot sage))
Pfam	PF00097 (zf-C3HC4); PF04757 (Pex2_Pex12)
InterPro	-
eggNOG	-
NR	GeneID:131007758

打开注释模块

亚细胞定位 Top 5

Rank	定位位置	中文	Score	Protein ID
1	Peroxisome	过氧化物酶体	1.00000	`XP_057790654.1`
2	Peroxisome membrane	过氧化物酶体膜	1.00000	`XP_057790654.1`
3	Nucleus	细胞核	0.00000	`XP_057790654.1`
4	Chromosome	染色体	0.00000	`XP_057790654.1`
5	Centromere	着丝粒	0.00000	`XP_057790654.1`

进入亚细胞定位查询

EMS 诱变突变

下表显示该基因在丹参 EMS 材料中的前 12 个候选突变；完整结果可进入 EMS 突变库继续筛选或下载。

位置	REF	ALT	类型	影响	携带材料数	材料
`Chr2:67107602`	`C`	`T`	EMS_canonical_SNV	CDS_variant	1	B69
`Chr2:67112005`	`G`	`A`	EMS_canonical_SNV	CDS_variant	1	D4
`Chr2:67112138`	`C`	`T`	EMS_canonical_SNV	CDS_variant	3	B140,B94,B98

进入 EMS 突变库

预测功能结构域

结构域结果来自 Pfam-A HMM 数据库和 HMMER hmmscan；位置为对应蛋白序列上的氨基酸坐标。

XP_057790654.1

347 aa

174

347

Pex2_Pex12

zf-C3HC4

PF04757 Pex2_Pex12 62-269 aa PF00097 zf-C3HC4 288-328 aa

XP_057790655.1

347 aa

174

347

Pex2_Pex12

zf-C3HC4

PF04757 Pex2_Pex12 62-269 aa PF00097 zf-C3HC4 288-328 aa

XP_057790656.1

347 aa

174

347

Pex2_Pex12

zf-C3HC4

PF04757 Pex2_Pex12 62-269 aa PF00097 zf-C3HC4 288-328 aa

Protein ID	来源	结构域编号	结构域名称	类型	起始 aa	终止 aa	E-value	Score	说明
`XP_057790654.1`	Pfam	`PF04757`	Pex2_Pex12	Family	62	269	7.5e-41	140.9	Pex2 / Pex12 amino terminal region
`XP_057790654.1`	Pfam	`PF00097`	zf-C3HC4	Domain	288	328	1.7e-05	25.3	Zinc finger, C3HC4 type (RING finger)
`XP_057790655.1`	Pfam	`PF04757`	Pex2_Pex12	Family	62	269	7.5e-41	140.9	Pex2 / Pex12 amino terminal region
`XP_057790655.1`	Pfam	`PF00097`	zf-C3HC4	Domain	288	328	1.7e-05	25.3	Zinc finger, C3HC4 type (RING finger)
`XP_057790656.1`	Pfam	`PF04757`	Pex2_Pex12	Family	62	269	7.5e-41	140.9	Pex2 / Pex12 amino terminal region
`XP_057790656.1`	Pfam	`PF00097`	zf-C3HC4	Domain	288	328	1.7e-05	25.3	Zinc finger, C3HC4 type (RING finger)

cDNA / CDS / Protein 序列

下载基因组 DNA（仅基因区域）

每个公开基因均提供参考注释对应的转录本序列；蛋白编码基因另提供 CDS 和蛋白序列。非编码 RNA 不适用 CDS 或蛋白下载。真实 accession 的版本后缀予以保留。

cDNA

5 records

下载 cDNA FASTA

XR_009096254.1
AATCTTTTTCTTGAAATATTTATTTATTGTGTATCTTGCAAAAGAATAAAAAAATAAGTTTCTTAATAAAGTGCAACGATGACAAAAAAATCTTTGTATTTGTTGCAAGGCAAATATTAGTACTAAAATTTAGTACGTAGAAACTTCGTGGTGAGGAACAGCAGCGATTGTTGCAGAGCTCACAAACACGCAAAAACCATCATCTATTGGAAAAGCAAGTAGAAATTTCGAACTGGTTAATGGATAGACAAACCCTAGCT...

XR_009096255.1
AATCTTTTTCTTGAAATATTTATTTATTGTGTATCTTGCAAAAGAATAAAAAAATAAGTTTCTTAATAAAGTGCAACGATGACAAAAAAATCTTTGTATTTGTTGCAAGGCAAATATTAGTACTAAAATTTAGTACGTAGAAACTTCGTGGTGAGGAACAGCAGCGATTGTTGCAGAGCTCACAAACACGCAAAAACCATCATCTATTGGAAAAGCAAGTAGAAATTTCGAACTGGTTAATGGATAGACAAACCCTAGCT...

CDS

3 records

下载 CDS FASTA

LOC131007758
ATGGATAGACAAACCCTAGCTTCATCGTCTTCGTCTACCAGTGGTAATTCTGCCAATCCTGCGCCGCCGGAGGATGCGTGGTTCAACACTTATCTGAAGCTAATTCCTCAATGGCAATCTGTTCACACGGCGATGATCCCGGTTGAAATATCTAGAGTTAATCAGGTAGATGCTGGCAGGCTTGACGTTGAAATGTCGGCCATGTTAAAAGAACAGTTGGTTAAAGTTTTTTCTTTGCTGAAGCCAGGAATGCTATTCCA...

Protein

3 records

下载 Protein FASTA

XP_057790654.1
MDRQTLASSSSSTSGNSANPAPPEDAWFNTYLKLIPQWQSVHTAMIPVEISRVNQVDAGRLDVEMSAMLKEQLVKVFSLLKPGMLFQYEPELDAFLEFLIWRFSIWVDKPTPGNALMNLRYRDERAVEPRVKVRTGLEGPGLTVSQKIWYCIATVGGQYIWARLQSFSAFRRWGDTEQRSLARRSWFLLQRIEGFYKAASFGNLLIFLLTGRYRSLIERALRARLVYGSPNMNRSVSFEYMNRQLVWNEFSEMLLLLLPL...

XP_057790655.1
MDRQTLASSSSSTSGNSANPAPPEDAWFNTYLKLIPQWQSVHTAMIPVEISRVNQVDAGRLDVEMSAMLKEQLVKVFSLLKPGMLFQYEPELDAFLEFLIWRFSIWVDKPTPGNALMNLRYRDERAVEPRVKVRTGLEGPGLTVSQKIWYCIATVGGQYIWARLQSFSAFRRWGDTEQRSLARRSWFLLQRIEGFYKAASFGNLLIFLLTGRYRSLIERALRARLVYGSPNMNRSVSFEYMNRQLVWNEFSEMLLLLLPL...

上下游序列下载

upstream/downstream 最大各 10000 bp。负链基因会自动反向互补，使最终 FASTA 为转录方向 5′→3′。

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