Gene Card 基因详情

支持统一新 ID、NCBI Gene ID、GeneID、locus_tag、Transcript ID、Protein ID,以及已人工核对的文献基因名查询。页面会先解析到丹参统一基因,再整合坐标、序列、注释、亚细胞定位、EMS 突变和下载入口。
示例

当前解析结果

SmilChr02G004473

染色体: Chr02 坐标: 67117740-67120938 链方向: + 类型: protein_coding

基本信息

统一新 Gene IDSmilChr02G004473
名称SmilChr02G004473
描述transcription factor bHLH68-like
染色体 / SeqIDChr02 / NC_080388.1
坐标与链方向67117740 - 67120938 / +

ID 对照

NCBI Gene IDLOC131007759
GeneID131007759
locus_tag-
NCBI NameLOC131007759
原始查询SmilChr02G004473

查看完整 ID 对照表

功能注释

来源GFF basic annotation; NCBI GO GAF; Arabidopsis/Rice homolog
描述transcription factor bHLH68-like
产物transcription factor bHLH68-like
ArabidopsisAT4G29100 (AT4G29100)
basic helix-loop-helix (bHLH) DNA-binding superfamily protein [Source:NCBI gene (formerly Entrezgene);Acc:829031]
identity=40.4; qcov=1.22; evalue=2.14e-49; confidence=medium
RiceOs05g0228400 (OsbHLH073)
-
identity=42.1; qcov=1.15; evalue=5.93e-55; confidence=medium
GOGO:0000978 (RNA polymerase II cis-regulatory region sequence-specific DNA binding); GO:0000981 (DNA-binding transcription factor activity, RNA polymerase II-specific); GO:0005634 (nucleus); GO:0006357 (regulation of transcription by RNA polymerase II); GO:0046983 (protein dimerization activity)
KEGG-
Pfam-
InterPro-
eggNOG-
NRGeneID:131007759

打开注释模块

亚细胞定位 Top 5

Rank定位位置中文ScoreProtein ID
1 Nucleus 细胞核 1.00000 XP_057790657.1
2 Chromosome 染色体 0.00000 XP_057790657.1
3 Centromere 着丝粒 0.00000 XP_057790657.1
4 Chromatin 染色质 0.00000 XP_057790657.1
5 Telomere 端粒 0.00000 XP_057790657.1

进入亚细胞定位查询

EMS 诱变突变

下表显示该基因在丹参 EMS 材料中的前 12 个候选突变;完整结果可进入 EMS 突变库继续筛选或下载。

位置 REF ALT 类型 影响 携带材料数 材料
Chr2:67118464 C T EMS_canonical_SNV CDS_variant 3 B121,C39,C80
Chr2:67119705 C T EMS_canonical_SNV CDS_variant 1 A7

进入 EMS 突变库

预测功能结构域

当前发布数据中,此基因没有可展示的 Pfam 结构域命中。

进入结构域查询

cDNA / CDS / Protein 序列

下载基因组 DNA(仅基因区域)

每个公开基因均提供参考注释对应的转录本序列;蛋白编码基因另提供 CDS 和蛋白序列。非编码 RNA 不适用 CDS 或蛋白下载。真实 accession 的版本后缀予以保留。

cDNA

2 records

下载 cDNA FASTA
XM_057934675.1
CACAAGTATAAAATTACTTGTATGTTGACAACGACATGGTCTTTCTTCAACCTCTCTTCTACTGAGAAAGAAAGCATAATTCTCAAAGGAAAGAAAAAATAAGAAAGCTTCAAACAAGAGCTCGTTTTGGTGCTCAAACAAGTAGATGTAGGAAAGTGATGATGAGCTTTTGAGTTAAAAATCTATAGATATTTGAAGAGAGAGAGAGAGAGAAGGGATTTTGTATTGTTGTTGAAGTGTTGTTTGGTGGTGATTTATTT...
XM_057934674.1
AAGTATAAAATTACTTGTATGTTGACAACGACATGGTCTTTCTTCAACCTCTCTTCTACTGAGAAAGAAAGCATAATTCTCAAAGGAAAGAAAAAATAAGAAAGCTTCAAACAAGAGCTCGTTTTGGTGCTCAAACAAGTAGATGTAGGAAAGTGATGATGAGCTTTTGAGTTAAAAATCTATAGATATTTGAAGAGAGAGAGAGAGAGAAGGGATTTTGTATTGTTGTTGAAGTGTTGTTTGGTGGTGATTTATTTGAG...

CDS

2 records

下载 CDS FASTA
LOC131007759
ATGATGGCTGGAAACCCTAATTCGTGGAGCATGAATGGCATGCATCCACAATCTCAGTTTGTTTATGGCTCCAATTCCTCAAATCCATCTTCAACTACTGCTGCTGATCATCCCTCCCAAGATTTCCCAGTTAGGTCTTGGAGCCAGTTGCTTCTGGGTGGATCGGGAGTTGGAGAAGAGGAGAGATTTGGAGCGAGCCTCTTTCACCAACAAAAGAAGCTGGAGAATTGGGAAGATCAAGTGCTGAATTTGAATCCAAG...
LOC131007759
ATGATGGCTGGAAACCCTAATTCGTGGAGCATGAATGGCATGCATCCACAATCTCAGTTTGTTTATGGCTCCAATTCCTCAAATCCATCTTCAACTACTGCTGCTGATCATCCCTCCCAAGATTTCCCAGTTAGGTCTTGGAGCCAGTTGCTTCTGGGTGGATCGGGAGTTGGAGAAGAGGAGAGATTTGGAGCGAGCCTCTTTCACCAACAAAAGAAGCTGGAGAATTGGGAAGATCAAGTGCTGAATTTGAATCCAAG...

Protein

2 records

下载 Protein FASTA
XP_057790657.1
MMAGNPNSWSMNGMHPQSQFVYGSNSSNPSSTTAADHPSQDFPVRSWSQLLLGGSGVGEEERFGASLFHQQKKLENWEDQVLNLNPSSFDVKQEAAQSSSCQIYDDEFKPSNSWPVSSPTSCVTSLFNFSAGKPPAADANHSSECNSTITGGVSKKARVQQSSAQPALKVRKEKLGDRITALHQLVSPFGKTDTASVLSEAIGYIRFLQGQIEALSSPYMRNASVGTGHHPQHSVQERNCLFPEEDSESEGGVKDLRSRG...
XP_057790658.1
MMAGNPNSWSMNGMHPQSQFVYGSNSSNPSSTTAADHPSQDFPVRSWSQLLLGGSGVGEEERFGASLFHQQKKLENWEDQVLNLNPSSFDVKQEAAQSSSCQIYDDEFKPSNSWPVSSPTSCVTSLFNFSAGKPPAADANHSSECNSTITGGVSKKARVQQSSAQPALKVRKEKLGDRITALHQLVSPFGKTDTASVLSEAIGYIRFLQGQIEVQERNCLFPEEDSESEGGVKDLRSRGLCLVPISCTQNVGNESGADYW...

上下游序列下载

upstream/downstream 最大各 10000 bp。负链基因会自动反向互补,使最终 FASTA 为转录方向 5′→3′。

下载 upstream 下载 downstream 下载 upstream + gene + downstream

JBrowse

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