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TF 结合位点 TF 靶基因 EMS 突变
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中文 EN

Gene Card 基因详情

支持统一新 ID、NCBI Gene ID、GeneID、locus_tag、Transcript ID、Protein ID，以及已人工核对的文献基因名查询。页面会先解析到丹参统一基因，再整合坐标、序列、注释、亚细胞定位、EMS 突变和下载入口。
示例

当前解析结果

SmilChr02G004477

染色体: Chr02 坐标: 67170236-67180519 链方向: + 类型: protein_coding

基本信息

统一新 Gene IDSmilChr02G004477
名称SmilChr02G004477
描述uncharacterized SmilChr02G004477
染色体 / SeqIDChr02 / NC_080388.1
坐标与链方向67170236 - 67180519 / +

ID 对照

NCBI Gene IDLOC131007756
GeneID131007756
locus_tag-
NCBI NameLOC131007756
原始查询SmilChr02G004477

查看完整 ID 对照表

功能注释

来源GFF basic annotation; NCBI GO GAF; Pfam-A/HMMER; Arabidopsis/Rice homolog
描述Leucine-rich repeat family protein [Source:NCBI gene (formerly Entrezgene);Acc:838143]; symbol=AT1G15740; hit=AT1G15740; species=arabidopsis; confidence=high
产物Leucine-rich repeat family protein [Source:NCBI gene (formerly Entrezgene);Acc:838143]; symbol=AT1G15740; hit=AT1G15740; species=arabidopsis; confidence=high
ArabidopsisAT1G15740 (AT1G15740)
Leucine-rich repeat family protein [Source:NCBI gene (formerly Entrezgene);Acc:838143]
identity=70.5; qcov=1; evalue=0; confidence=high
RiceOs04g0503500
-
identity=63.1; qcov=1.01; evalue=0; confidence=high
GOGO:0005515 (protein binding); GO:0019005 (SCF ubiquitin ligase complex); GO:0031146 (SCF-dependent proteasomal ubiquitin-dependent protein catabolic process)
KEGG-
PfamPF13516 (LRR_6); PF13855 (LRR_8); PF25372 (LRR_FBXL15)
InterPro-
eggNOG-
NRGeneID:131007756

打开注释模块

亚细胞定位 Top 5

Rank定位位置中文ScoreProtein ID
1 Cytoplasm 细胞质 1.00000 XP_057790647.1
2 Nucleus 细胞核 0.60000 XP_057790647.1
3 Chromosome 染色体 0.00000 XP_057790647.1
4 Centromere 着丝粒 0.00000 XP_057790647.1
5 Chromatin 染色质 0.00000 XP_057790647.1

进入亚细胞定位查询

EMS 诱变突变

下表显示该基因在丹参 EMS 材料中的前 12 个候选突变；完整结果可进入 EMS 突变库继续筛选或下载。

位置 REF ALT 类型 影响 携带材料数 材料
Chr2:67172532 C T EMS_canonical_SNV CDS_variant 2 B130,B137
Chr2:67174570 A AG 1bp_insertion frameshift_variant 104 A1,A16,A22,A23,A6,B1,B101,B104,B105,B107,B108,B11,B110,B113,B114,B115,B117,B118,B119,B12,B120,B122,B124,B13,B131,B135,B136,B15,B2,B21,B22,B23,B30,B31,B33,B36,B37,B4,B41,B47,B49,B50,B52,B55,B6,B63,B64,B7,B70,B71,B73,B77,B79,B8,B83,B87,B9,B91,B93,B94,C12,C2,C20,C21,C22,C23,C24,C25,C26,C29,C3,C31,C32,C33,C35,C37,C39,C4,C40,C41,C42,C44,C45,C48,C51,C52,C56,C59,C61,C62,C68,C70,C74,C75,C78,C79,C80,C83,C85,C86,D1,D10,D3,D5
Chr2:67174611 G A EMS_canonical_SNV CDS_variant 2 B45,B77
Chr2:67175764 C T EMS_canonical_SNV CDS_variant 3 B137,B61,D8
Chr2:67178775 G A EMS_canonical_SNV CDS_variant 4 A24,B107,B15,B44

进入 EMS 突变库

预测功能结构域

结构域结果来自 Pfam-A HMM 数据库和 HMMER hmmscan；位置为对应蛋白序列上的氨基酸坐标。

XP_057790647.1
578 aa
N
1
289
578
LRR_6
LRR_FBXL15
LRR_6
LRR_6
LRR_6
LRR_8
LRR_6
LRR_6
LRR_6
LRR_8
LRR_6
C
PF13516 LRR_6 133-152 aa PF25372 LRR_FBXL15 151-225 aa PF13516 LRR_6 155-175 aa PF13516 LRR_6 181-203 aa PF13516 LRR_6 231-252 aa PF13855 LRR_8 305-363 aa PF13516 LRR_6 326-343 aa PF13516 LRR_6 352-372 aa PF13516 LRR_6 400-420 aa PF13855 LRR_8 472-530 aa PF13516 LRR_6 495-517 aa
XP_057790648.1
578 aa
N
1
289
578
LRR_6
LRR_FBXL15
LRR_6
LRR_6
LRR_6
LRR_8
LRR_6
LRR_6
LRR_6
LRR_8
LRR_6
C
PF13516 LRR_6 133-152 aa PF25372 LRR_FBXL15 151-225 aa PF13516 LRR_6 155-175 aa PF13516 LRR_6 181-203 aa PF13516 LRR_6 231-252 aa PF13855 LRR_8 305-363 aa PF13516 LRR_6 326-343 aa PF13516 LRR_6 352-372 aa PF13516 LRR_6 400-420 aa PF13855 LRR_8 472-530 aa PF13516 LRR_6 495-517 aa
XP_057790649.1
578 aa
N
1
289
578
LRR_6
LRR_FBXL15
LRR_6
LRR_6
LRR_6
LRR_8
LRR_6
LRR_6
LRR_6
LRR_8
LRR_6
C
PF13516 LRR_6 133-152 aa PF25372 LRR_FBXL15 151-225 aa PF13516 LRR_6 155-175 aa PF13516 LRR_6 181-203 aa PF13516 LRR_6 231-252 aa PF13855 LRR_8 305-363 aa PF13516 LRR_6 326-343 aa PF13516 LRR_6 352-372 aa PF13516 LRR_6 400-420 aa PF13855 LRR_8 472-530 aa PF13516 LRR_6 495-517 aa
XP_057790650.1
578 aa
N
1
289
578
LRR_6
LRR_FBXL15
LRR_6
LRR_6
LRR_6
LRR_8
LRR_6
LRR_6
LRR_6
LRR_8
LRR_6
C
PF13516 LRR_6 133-152 aa PF25372 LRR_FBXL15 151-225 aa PF13516 LRR_6 155-175 aa PF13516 LRR_6 181-203 aa PF13516 LRR_6 231-252 aa PF13855 LRR_8 305-363 aa PF13516 LRR_6 326-343 aa PF13516 LRR_6 352-372 aa PF13516 LRR_6 400-420 aa PF13855 LRR_8 472-530 aa PF13516 LRR_6 495-517 aa
XP_057790651.1
578 aa
N
1
289
578
LRR_6
LRR_FBXL15
LRR_6
LRR_6
LRR_6
LRR_8
LRR_6
LRR_6
LRR_6
LRR_8
LRR_6
C
PF13516 LRR_6 133-152 aa PF25372 LRR_FBXL15 151-225 aa PF13516 LRR_6 155-175 aa PF13516 LRR_6 181-203 aa PF13516 LRR_6 231-252 aa PF13855 LRR_8 305-363 aa PF13516 LRR_6 326-343 aa PF13516 LRR_6 352-372 aa PF13516 LRR_6 400-420 aa PF13855 LRR_8 472-530 aa PF13516 LRR_6 495-517 aa
XP_057790652.1
578 aa
N
1
289
578
LRR_6
LRR_FBXL15
LRR_6
LRR_6
LRR_6
LRR_8
LRR_6
LRR_6
LRR_6
LRR_8
LRR_6
C
PF13516 LRR_6 133-152 aa PF25372 LRR_FBXL15 151-225 aa PF13516 LRR_6 155-175 aa PF13516 LRR_6 181-203 aa PF13516 LRR_6 231-252 aa PF13855 LRR_8 305-363 aa PF13516 LRR_6 326-343 aa PF13516 LRR_6 352-372 aa PF13516 LRR_6 400-420 aa PF13855 LRR_8 472-530 aa PF13516 LRR_6 495-517 aa
Protein ID 来源 结构域编号 结构域名称 类型 起始 aa 终止 aa E-value Score 说明
XP_057790647.1 Pfam PF13516 LRR_6 Repeat 133 152 1.2e-29 100.6 Leucine Rich repeat
XP_057790647.1 Pfam PF25372 LRR_FBXL15 Repeat 151 225 3e-28 99.2 F-box/LRR-repeat protein 15, leucine rich repeat domain
XP_057790647.1 Pfam PF13516 LRR_6 Repeat 155 175 1.2e-29 100.6 Leucine Rich repeat
XP_057790647.1 Pfam PF13516 LRR_6 Repeat 181 203 1.2e-29 100.6 Leucine Rich repeat
XP_057790647.1 Pfam PF13516 LRR_6 Repeat 231 252 1.2e-29 100.6 Leucine Rich repeat
XP_057790647.1 Pfam PF13855 LRR_8 Repeat 305 363 1.8e-25 89.2 Leucine rich repeat
XP_057790647.1 Pfam PF13516 LRR_6 Repeat 326 343 1.2e-29 100.6 Leucine Rich repeat
XP_057790647.1 Pfam PF13516 LRR_6 Repeat 352 372 1.2e-29 100.6 Leucine Rich repeat
XP_057790647.1 Pfam PF13516 LRR_6 Repeat 400 420 1.2e-29 100.6 Leucine Rich repeat
XP_057790647.1 Pfam PF13855 LRR_8 Repeat 472 530 1.8e-25 89.2 Leucine rich repeat
XP_057790647.1 Pfam PF13516 LRR_6 Repeat 495 517 1.2e-29 100.6 Leucine Rich repeat
XP_057790648.1 Pfam PF13516 LRR_6 Repeat 133 152 1.2e-29 100.6 Leucine Rich repeat
XP_057790648.1 Pfam PF25372 LRR_FBXL15 Repeat 151 225 3e-28 99.2 F-box/LRR-repeat protein 15, leucine rich repeat domain
XP_057790648.1 Pfam PF13516 LRR_6 Repeat 155 175 1.2e-29 100.6 Leucine Rich repeat
XP_057790648.1 Pfam PF13516 LRR_6 Repeat 181 203 1.2e-29 100.6 Leucine Rich repeat
XP_057790648.1 Pfam PF13516 LRR_6 Repeat 231 252 1.2e-29 100.6 Leucine Rich repeat
XP_057790648.1 Pfam PF13855 LRR_8 Repeat 305 363 1.8e-25 89.2 Leucine rich repeat
XP_057790648.1 Pfam PF13516 LRR_6 Repeat 326 343 1.2e-29 100.6 Leucine Rich repeat
XP_057790648.1 Pfam PF13516 LRR_6 Repeat 352 372 1.2e-29 100.6 Leucine Rich repeat
XP_057790648.1 Pfam PF13516 LRR_6 Repeat 400 420 1.2e-29 100.6 Leucine Rich repeat
XP_057790648.1 Pfam PF13855 LRR_8 Repeat 472 530 1.8e-25 89.2 Leucine rich repeat
XP_057790648.1 Pfam PF13516 LRR_6 Repeat 495 517 1.2e-29 100.6 Leucine Rich repeat
XP_057790649.1 Pfam PF13516 LRR_6 Repeat 133 152 1.2e-29 100.6 Leucine Rich repeat
XP_057790649.1 Pfam PF25372 LRR_FBXL15 Repeat 151 225 3e-28 99.2 F-box/LRR-repeat protein 15, leucine rich repeat domain
XP_057790649.1 Pfam PF13516 LRR_6 Repeat 155 175 1.2e-29 100.6 Leucine Rich repeat
XP_057790649.1 Pfam PF13516 LRR_6 Repeat 181 203 1.2e-29 100.6 Leucine Rich repeat
XP_057790649.1 Pfam PF13516 LRR_6 Repeat 231 252 1.2e-29 100.6 Leucine Rich repeat
XP_057790649.1 Pfam PF13855 LRR_8 Repeat 305 363 1.8e-25 89.2 Leucine rich repeat
XP_057790649.1 Pfam PF13516 LRR_6 Repeat 326 343 1.2e-29 100.6 Leucine Rich repeat
XP_057790649.1 Pfam PF13516 LRR_6 Repeat 352 372 1.2e-29 100.6 Leucine Rich repeat
XP_057790649.1 Pfam PF13516 LRR_6 Repeat 400 420 1.2e-29 100.6 Leucine Rich repeat
XP_057790649.1 Pfam PF13855 LRR_8 Repeat 472 530 1.8e-25 89.2 Leucine rich repeat
XP_057790649.1 Pfam PF13516 LRR_6 Repeat 495 517 1.2e-29 100.6 Leucine Rich repeat
XP_057790650.1 Pfam PF13516 LRR_6 Repeat 133 152 1.2e-29 100.6 Leucine Rich repeat
XP_057790650.1 Pfam PF25372 LRR_FBXL15 Repeat 151 225 3e-28 99.2 F-box/LRR-repeat protein 15, leucine rich repeat domain
XP_057790650.1 Pfam PF13516 LRR_6 Repeat 155 175 1.2e-29 100.6 Leucine Rich repeat
XP_057790650.1 Pfam PF13516 LRR_6 Repeat 181 203 1.2e-29 100.6 Leucine Rich repeat
XP_057790650.1 Pfam PF13516 LRR_6 Repeat 231 252 1.2e-29 100.6 Leucine Rich repeat
XP_057790650.1 Pfam PF13855 LRR_8 Repeat 305 363 1.8e-25 89.2 Leucine rich repeat
XP_057790650.1 Pfam PF13516 LRR_6 Repeat 326 343 1.2e-29 100.6 Leucine Rich repeat
XP_057790650.1 Pfam PF13516 LRR_6 Repeat 352 372 1.2e-29 100.6 Leucine Rich repeat
XP_057790650.1 Pfam PF13516 LRR_6 Repeat 400 420 1.2e-29 100.6 Leucine Rich repeat
XP_057790650.1 Pfam PF13855 LRR_8 Repeat 472 530 1.8e-25 89.2 Leucine rich repeat
XP_057790650.1 Pfam PF13516 LRR_6 Repeat 495 517 1.2e-29 100.6 Leucine Rich repeat
XP_057790651.1 Pfam PF13516 LRR_6 Repeat 133 152 1.2e-29 100.6 Leucine Rich repeat
XP_057790651.1 Pfam PF25372 LRR_FBXL15 Repeat 151 225 3e-28 99.2 F-box/LRR-repeat protein 15, leucine rich repeat domain
XP_057790651.1 Pfam PF13516 LRR_6 Repeat 155 175 1.2e-29 100.6 Leucine Rich repeat
XP_057790651.1 Pfam PF13516 LRR_6 Repeat 181 203 1.2e-29 100.6 Leucine Rich repeat
XP_057790651.1 Pfam PF13516 LRR_6 Repeat 231 252 1.2e-29 100.6 Leucine Rich repeat
XP_057790651.1 Pfam PF13855 LRR_8 Repeat 305 363 1.8e-25 89.2 Leucine rich repeat
XP_057790651.1 Pfam PF13516 LRR_6 Repeat 326 343 1.2e-29 100.6 Leucine Rich repeat
XP_057790651.1 Pfam PF13516 LRR_6 Repeat 352 372 1.2e-29 100.6 Leucine Rich repeat
XP_057790651.1 Pfam PF13516 LRR_6 Repeat 400 420 1.2e-29 100.6 Leucine Rich repeat
XP_057790651.1 Pfam PF13855 LRR_8 Repeat 472 530 1.8e-25 89.2 Leucine rich repeat
XP_057790651.1 Pfam PF13516 LRR_6 Repeat 495 517 1.2e-29 100.6 Leucine Rich repeat
XP_057790652.1 Pfam PF13516 LRR_6 Repeat 133 152 1.2e-29 100.6 Leucine Rich repeat
XP_057790652.1 Pfam PF25372 LRR_FBXL15 Repeat 151 225 3e-28 99.2 F-box/LRR-repeat protein 15, leucine rich repeat domain
XP_057790652.1 Pfam PF13516 LRR_6 Repeat 155 175 1.2e-29 100.6 Leucine Rich repeat
XP_057790652.1 Pfam PF13516 LRR_6 Repeat 181 203 1.2e-29 100.6 Leucine Rich repeat
XP_057790652.1 Pfam PF13516 LRR_6 Repeat 231 252 1.2e-29 100.6 Leucine Rich repeat
XP_057790652.1 Pfam PF13855 LRR_8 Repeat 305 363 1.8e-25 89.2 Leucine rich repeat
XP_057790652.1 Pfam PF13516 LRR_6 Repeat 326 343 1.2e-29 100.6 Leucine Rich repeat
XP_057790652.1 Pfam PF13516 LRR_6 Repeat 352 372 1.2e-29 100.6 Leucine Rich repeat
XP_057790652.1 Pfam PF13516 LRR_6 Repeat 400 420 1.2e-29 100.6 Leucine Rich repeat
XP_057790652.1 Pfam PF13855 LRR_8 Repeat 472 530 1.8e-25 89.2 Leucine rich repeat
XP_057790652.1 Pfam PF13516 LRR_6 Repeat 495 517 1.2e-29 100.6 Leucine Rich repeat

cDNA / CDS / Protein 序列

下载基因组 DNA（仅基因区域）

每个公开基因均提供参考注释对应的转录本序列；蛋白编码基因另提供 CDS 和蛋白序列。非编码 RNA 不适用 CDS 或蛋白下载。真实 accession 的版本后缀予以保留。

cDNA

6 records

下载 cDNA FASTA
XM_057934665.1
TCCTGACACCTCCCCACCACGTGGCGGCGATCGCTTGGCTCGGATCCTGGCTCGGATGAGGCTGCGCCACTCTCTCTCTCTCCTCTTCTTGTACGCTTCTTCTCCTCTCTATCTTCTTCCTCTGCTACTCTCACTCTCTCTCTCTCTATACTGTACATTTCTAGACTGGTGATGCTTCGATGGAGATATTAAGGTACTTTTCAGCAATTCCTTTTCTCTTTCGCATGCGCACTTCGGCCTCTTGGTGATGCTACTGTGTG...
XM_057934664.1
TTGGCTCGGATCCTGGCTCGGATGAGGCTGCGCCACTCTCTCTCTCTCCTCTTCTTGTACGCTTCTTCTCCTCTCTATCTTCTTCCTCTGCTACTCTCACTCTCTCTCTCTCTATACTGTACATTTCTAGACTGGTGATGCTTCGATGGAGATATTAAGGGTCGTATTCCGCTTGTACCCCTGACATTCGTAATAAATGGGAAATTGCACTGTATCACTGCTGCTTTTGTGATATCTTAGATAAGAATACTGCTGTAAAT...

CDS

6 records

下载 CDS FASTA
LOC131007756
ATGGGGGGAGCCTGTTCAAGAAAGCGTGATCAACAGGCTAACGACGATAACCTCAACAGAGGAGTATCCGGGCGATATACTAAAAGTGGGAGCTCAAAATGGCTTGGGACCTCATTTCTTAGAGCTTCTATGGATGCTAGCCAGGGGAAACAAAGATGCCCGACGCTTATGGATTTGTGCATATACAAAATTAGGGAGGACATAAACAAATATAGCACCTTCTCCATGCTGCCAAGGGATATAAGTCAGCAGATTTTTGA...
LOC131007756
ATGGGGGGAGCCTGTTCAAGAAAGCGTGATCAACAGGCTAACGACGATAACCTCAACAGAGGAGTATCCGGGCGATATACTAAAAGTGGGAGCTCAAAATGGCTTGGGACCTCATTTCTTAGAGCTTCTATGGATGCTAGCCAGGGGAAACAAAGATGCCCGACGCTTATGGATTTGTGCATATACAAAATTAGGGAGGACATAAACAAATATAGCACCTTCTCCATGCTGCCAAGGGATATAAGTCAGCAGATTTTTGA...

Protein

6 records

下载 Protein FASTA
XP_057790647.1
MGGACSRKRDQQANDDNLNRGVSGRYTKSGSSKWLGTSFLRASMDASQGKQRCPTLMDLCIYKIREDINKYSTFSMLPRDISQQIFDDLVCSQCLTDTLLEAFRECALQDLNLGEYPGVDDGWMDIVSSQGSSLLSVDLSGSDVTDSGLTYLKECTSLQALNLNYCDQISDKGLEQINGLSNLTTLSFKRNNLITAQGISSLSGLIKLIKLDLERCPRIHGGLAHLKGLAKLEMLNVNCCNCITDADMKAISGLTSLKSL...
XP_057790648.1
MGGACSRKRDQQANDDNLNRGVSGRYTKSGSSKWLGTSFLRASMDASQGKQRCPTLMDLCIYKIREDINKYSTFSMLPRDISQQIFDDLVCSQCLTDTLLEAFRECALQDLNLGEYPGVDDGWMDIVSSQGSSLLSVDLSGSDVTDSGLTYLKECTSLQALNLNYCDQISDKGLEQINGLSNLTTLSFKRNNLITAQGISSLSGLIKLIKLDLERCPRIHGGLAHLKGLAKLEMLNVNCCNCITDADMKAISGLTSLKSL...

上下游序列下载

upstream/downstream 最大各 10000 bp。负链基因会自动反向互补，使最终 FASTA 为转录方向 5′→3′。

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