Gene Card 基因详情

支持统一新 ID、NCBI Gene ID、GeneID、locus_tag、Transcript ID、Protein ID，以及已人工核对的文献基因名查询。页面会先解析到丹参统一基因，再整合坐标、序列、注释、亚细胞定位、EMS 突变和下载入口。

当前解析结果

`SmilChr02G004496`

染色体: Chr02 坐标: 67456215-67458614 链方向: + 类型: protein_coding

基本信息

统一新 Gene ID	`SmilChr02G004496`
名称	SmilChr02G004496
描述	F-box/LRR-repeat protein 14
染色体 / SeqID	Chr02 / NC_080388.1
坐标与链方向	67456215 - 67458614 / `+`

ID 对照

NCBI Gene ID	`LOC131007585`
GeneID	`131007585`
locus_tag	`-`
NCBI Name	`LOC131007585`
原始查询	`SmilChr02G004496`

查看完整 ID 对照表

功能注释

来源	GFF basic annotation; NCBI GO GAF; Pfam-A/HMMER; Arabidopsis/Rice homolog
描述	F-box/LRR-repeat protein 14
产物	F-box/LRR-repeat protein 14
Arabidopsis	`AT1G80570` (AT1G80570) RNI-like superfamily protein [Source:NCBI gene (formerly Entrezgene);Acc:844396] identity=68.2; qcov=1; evalue=0; confidence=high
Rice	`Os04g0370600` (Os_F0687) - identity=39.4; qcov=1; evalue=1.63e-99; confidence=medium
GO	GO:0005515 (protein binding); GO:0019005 (SCF ubiquitin ligase complex); GO:0031146 (SCF-dependent proteasomal ubiquitin-dependent protein catabolic process)
KEGG	-
Pfam	PF13516 (LRR_6); PF25372 (LRR_FBXL15)
InterPro	-
eggNOG	-
NR	GeneID:131007585

打开注释模块

亚细胞定位 Top 5

Rank	定位位置	中文	Score	Protein ID
1	Nucleus	细胞核	0.40000	`XP_057790472.1`
2	Chloroplast	叶绿体	0.40000	`XP_057790472.1`
3	Cytoplasm	细胞质	0.20000	`XP_057790472.1`
4	Chromosome	染色体	0.00000	`XP_057790472.1`
5	Centromere	着丝粒	0.00000	`XP_057790472.1`

进入亚细胞定位查询

EMS 诱变突变

下表显示该基因在丹参 EMS 材料中的前 12 个候选突变；完整结果可进入 EMS 突变库继续筛选或下载。

位置	REF	ALT	类型	影响	携带材料数	材料
`Chr2:67457127`	`C`	`T`	EMS_canonical_SNV	CDS_variant	1	B73
`Chr2:67457540`	`AC`	`A`	1bp_deletion	frameshift_variant	1	B129
`Chr2:67457540`	`AC`	`A`	1bp_deletion	CDS_variant	1	B129
`Chr2:67457667`	`G`	`A`	EMS_canonical_SNV	CDS_variant	1	B53
`Chr2:67457740`	`G`	`A`	EMS_canonical_SNV	CDS_variant	1	B30
`Chr2:67457797`	`C`	`T`	EMS_canonical_SNV	CDS_variant	1	B128
`Chr2:67457855`	`C`	`T`	EMS_canonical_SNV	CDS_variant	2	C64,C66
`Chr2:67457863`	`C`	`T`	EMS_canonical_SNV	CDS_variant	4	B115,C40,C45,C83
`Chr2:67457886`	`C`	`T`	EMS_canonical_SNV	CDS_variant	4	B115,C40,C45,C83
`Chr2:67458166`	`G`	`A`	EMS_canonical_SNV	CDS_variant	2	A11,A3
`Chr2:67458175`	`C`	`T`	EMS_canonical_SNV	CDS_variant	1	B104
`Chr2:67458290`	`G`	`A`	EMS_canonical_SNV	CDS_variant	1	D11

进入 EMS 突变库

预测功能结构域

结构域结果来自 Pfam-A HMM 数据库和 HMMER hmmscan；位置为对应蛋白序列上的氨基酸坐标。

XP_057790472.1

468 aa

234

468

LRR_FBXL15

LRR_6

PF25372 LRR_FBXL15 378-451 aa PF13516 LRR_6 384-402 aa

XP_057790473.1

468 aa

234

468

LRR_FBXL15

LRR_6

PF25372 LRR_FBXL15 378-451 aa PF13516 LRR_6 384-402 aa

XP_057790474.1

468 aa

234

468

LRR_FBXL15

LRR_6

PF25372 LRR_FBXL15 378-451 aa PF13516 LRR_6 384-402 aa

XP_057790475.1

468 aa

234

468

LRR_FBXL15

LRR_6

PF25372 LRR_FBXL15 378-451 aa PF13516 LRR_6 384-402 aa

XP_057790476.1

468 aa

234

468

LRR_FBXL15

LRR_6

PF25372 LRR_FBXL15 378-451 aa PF13516 LRR_6 384-402 aa

Protein ID	来源	结构域编号	结构域名称	类型	起始 aa	终止 aa	E-value	Score	说明
`XP_057790472.1`	Pfam	`PF25372`	LRR_FBXL15	Repeat	378	451	2.3e-13	50.1	F-box/LRR-repeat protein 15, leucine rich repeat domain
`XP_057790472.1`	Pfam	`PF13516`	LRR_6	Repeat	384	402	1.3e-08	35.0	Leucine Rich repeat
`XP_057790473.1`	Pfam	`PF25372`	LRR_FBXL15	Repeat	378	451	2.3e-13	50.1	F-box/LRR-repeat protein 15, leucine rich repeat domain
`XP_057790473.1`	Pfam	`PF13516`	LRR_6	Repeat	384	402	1.3e-08	35.0	Leucine Rich repeat
`XP_057790474.1`	Pfam	`PF25372`	LRR_FBXL15	Repeat	378	451	2.3e-13	50.1	F-box/LRR-repeat protein 15, leucine rich repeat domain
`XP_057790474.1`	Pfam	`PF13516`	LRR_6	Repeat	384	402	1.3e-08	35.0	Leucine Rich repeat
`XP_057790475.1`	Pfam	`PF25372`	LRR_FBXL15	Repeat	378	451	2.3e-13	50.1	F-box/LRR-repeat protein 15, leucine rich repeat domain
`XP_057790475.1`	Pfam	`PF13516`	LRR_6	Repeat	384	402	1.3e-08	35.0	Leucine Rich repeat
`XP_057790476.1`	Pfam	`PF25372`	LRR_FBXL15	Repeat	378	451	2.3e-13	50.1	F-box/LRR-repeat protein 15, leucine rich repeat domain
`XP_057790476.1`	Pfam	`PF13516`	LRR_6	Repeat	384	402	1.3e-08	35.0	Leucine Rich repeat

cDNA / CDS / Protein 序列

下载基因组 DNA（仅基因区域）

每个公开基因均提供参考注释对应的转录本序列；蛋白编码基因另提供 CDS 和蛋白序列。非编码 RNA 不适用 CDS 或蛋白下载。真实 accession 的版本后缀予以保留。

cDNA

5 records

下载 cDNA FASTA

XM_057934492.1
GATTTATTTGTCAAAACCCCAAAAAGGAAAAACAGAAACGTATGTCGTCGCCTTTGTTTCTCTCCCTATTTCGCTATTTTCGCTCGCGTTACGTTACTCTGATCCTTATCTGCTAAATTCGACTCTTTTTTTTCACCGTTTTTTCCTTCTTCTAGATTTTGATATATTGCTGCGGAGAACTTGATTTCCAATTGATCTCGACAACCTTCACAACTGTGAATTCTTTGCTTCCAAAGTCGGTTCTTTGGCAAGGTGGTACA...

XM_057934491.1
GATTTATTTGTCAAAACCCCAAAAAGGAAAAACAGAAACGTATGTCGTCGCCTTTGTTTCTCTCCCTATTTCGCTATTTTCGCTCGCGTTACGTTACTCTGATCCTTATCTGCTAAATTCGACTCTTTTTTTTCACCGTTTTTTCCTTCTTCTAGATTTTGATATATTGCTGCGGAGAACTTGATTTCCAATTGATCTCGACAACCTTCACAACTGTGAATTCTTTGCTTCCAAAGTCGGTTCTTTGGCAAGGTGGTACA...

CDS

5 records

下载 CDS FASTA

LOC131007585
ATGGATAATTTGCCAGACCTGGTAGCTTGGGACATATTGGAGAGGATAGACACTACTGCAGATAAAAGTGCTGTATCTCTAACTTGTAAACGCCTCCACGAATTGGACAATGTGCAACGGAAATCTATCCGTGTTGGCTGTGGCTTGCGTCCTGCCAATGAGGCATTGGTCTCTCTCTGCAACAGGTTTCAGAACTTGGAGAAAGTTGAGATCTCTTACTCGGGTTGGATGTCCAAGTTAGGGAAACAGTTGGATGATCA...

Protein

5 records

下载 Protein FASTA

XP_057790472.1
MDNLPDLVAWDILERIDTTADKSAVSLTCKRLHELDNVQRKSIRVGCGLRPANEALVSLCNRFQNLEKVEISYSGWMSKLGKQLDDQGLYNLSISCPLLADLTLSYCTFITDAGVSHLASCSHLSSLKLIFTPRISGCGILSVVVGCKKLALLHLIRCLNITRMEWLEYLGKLETLEDLCIKNCRAIGEGDLIKLGQSWQRLKRLQFEVDANYRYMKVYDRLAVDQWQKQSVPCDRMTELRLVNGVISPGRGLACVLGKC...

XP_057790473.1
MDNLPDLVAWDILERIDTTADKSAVSLTCKRLHELDNVQRKSIRVGCGLRPANEALVSLCNRFQNLEKVEISYSGWMSKLGKQLDDQGLYNLSISCPLLADLTLSYCTFITDAGVSHLASCSHLSSLKLIFTPRISGCGILSVVVGCKKLALLHLIRCLNITRMEWLEYLGKLETLEDLCIKNCRAIGEGDLIKLGQSWQRLKRLQFEVDANYRYMKVYDRLAVDQWQKQSVPCDRMTELRLVNGVISPGRGLACVLGKC...

上下游序列下载

upstream/downstream 最大各 10000 bp。负链基因会自动反向互补，使最终 FASTA 为转录方向 5′→3′。

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