Gene Card 基因详情

支持统一新 ID、NCBI Gene ID、GeneID、locus_tag、Transcript ID、Protein ID，以及已人工核对的文献基因名查询。页面会先解析到丹参统一基因，再整合坐标、序列、注释、亚细胞定位、EMS 突变和下载入口。

当前解析结果

`SmilChr02G004497`

染色体: Chr02 坐标: 67459486-67477871 链方向: + 类型: protein_coding

基本信息

统一新 Gene ID	`SmilChr02G004497`
名称	SmilChr02G004497
描述	phospholipid-transporting ATPase 2
染色体 / SeqID	Chr02 / NC_080388.1
坐标与链方向	67459486 - 67477871 / `+`

ID 对照

NCBI Gene ID	`LOC131007586`
GeneID	`131007586`
locus_tag	`-`
NCBI Name	`LOC131007586`
原始查询	`SmilChr02G004497`

查看完整 ID 对照表

功能注释

来源	GFF basic annotation; NCBI GO GAF; Pfam-A/HMMER; Arabidopsis/Rice homolog
描述	phospholipid-transporting ATPase 2
产物	phospholipid-transporting ATPase 2
Arabidopsis	`AT5G44240` (ALA2) aminophospholipid ATPase 2 [Source:NCBI gene (formerly Entrezgene);Acc:834447] identity=83.8; qcov=0.984; evalue=0; confidence=high
Rice	`Os11g0446500` - identity=75.5; qcov=0.985; evalue=0; confidence=high
GO	GO:0000287 (magnesium ion binding); GO:0005524 (ATP binding); GO:0005886 (plasma membrane); GO:0016887 (ATP hydrolysis activity); GO:0045332 (phospholipid translocation); GO:0140326 (ATPase-coupled intramembrane lipid carrier activity)
KEGG	-
Pfam	PF00702 (Hydrolase); PF08282 (Hydrolase_3); PF13246 (Cation_ATPase); PF16209 (PhoLip_ATPase_N); PF16212 (PhoLip_ATPase_C)
InterPro	-
eggNOG	-
NR	GeneID:131007586

打开注释模块

亚细胞定位 Top 5

Rank	定位位置	中文	Score	Protein ID
1	Endosome	内体	0.60000	`XP_057790477.1`
2	Endosome membrane	内体膜	0.60000	`XP_057790477.1`
3	Cell membrane	细胞膜	0.40000	`XP_057790477.1`
4	Endoplasmic reticulum	内质网	0.40000	`XP_057790478.1`
5	Vacuole membrane	液泡膜	0.40000	`XP_057790477.1`

进入亚细胞定位查询

EMS 诱变突变

下表显示该基因在丹参 EMS 材料中的前 12 个候选突变；完整结果可进入 EMS 突变库继续筛选或下载。

位置	REF	ALT	类型	影响	携带材料数	材料
`Chr2:67464253`	`C`	`T`	EMS_canonical_SNV	stop_gained	197	A1,A10,A11,A13,A14,A15,A16,A18,A19,A2,A20,A22,A23,A25,A3,A4,A5,A6,A7,A8,A9,B10,B100,B101,B102,B103,B104,B106,B107,B108,B109,B11,B111,B114,B115,B118,B119,B12,B123,B125,B126,B127,B128,B129,B13,B130,B131,B132,B133,B135,B139,B14,B140,B15,B16,B17,B18,B19,B2,B22,B23,B24,B25,B26,B27,B30,B31,B34,B35,B36,B37,B4,B40,B42,B43,B44,B45,B46,B47,B48,B5,B50,B51,B52,B54,B55,B56,B57,B59,B60,B61,B62,B63,B64,B65,B67,B68,B69,B7,B73,B75,B76,B78,B79,B8,B80,B81,B84,B86,B88,B9,B90,B91,B92,B93,B95,B98,B99,C1,C10,C12,C13,C14,C15,C16,C17,C18,C19,C2,C20,C21,C22,C23,C24,C25,C26,C27,C29,C30,C32,C33,C34,C35,C36,C37,C38,C39,C4,C42,C43,C44,C45,C46,C47,C48,C49,C5,C52,C53,C55,C56,C58,C59,C6,C60,C61,C64,C65,C66,C67,C69,C7,C70,C71,C72,C73,C75,C76,C78,C79,C8,C80,C81,C82,C83,C84,C87,C9,D1,D11,D2,D3,D4,D5,D6,D8,D9
`Chr2:67464300`	`AGC`	`A`	2bp_deletion	frameshift_variant	234	A1,A10,A11,A13,A14,A15,A16,A18,A19,A2,A20,A21,A22,A23,A24,A25,A3,A4,A5,A6,A7,A8,A9,B10,B100,B101,B102,B103,B104,B106,B107,B108,B109,B11,B111,B113,B114,B115,B117,B118,B119,B12,B120,B121,B122,B123,B124,B125,B126,B127,B128,B129,B13,B130,B131,B132,B133,B134,B135,B136,B139,B14,B140,B15,B16,B17,B18,B19,B2,B20,B21,B22,B23,B24,B25,B26,B27,B29,B3,B30,B31,B33,B34,B35,B36,B37,B4,B40,B41,B42,B43,B44,B45,B46,B47,B48,B49,B5,B51,B52,B54,B55,B56,B57,B58,B59,B6,B60,B61,B62,B63,B64,B65,B66,B67,B68,B69,B7,B70,B71,B72,B73,B75,B76,B77,B78,B79,B8,B80,B81,B82,B83,B84,B85,B86,B88,B89,B9,B90,B91,B92,B93,B95,B96,B97,B98,B99,C1,C10,C12,C13,C14,C15,C16,C17,C18,C19,C2,C20,C21,C22,C23,C24,C25,C26,C27,C29,C30,C31,C32,C33,C34,C35,C36,C37,C38,C39,C4,C40,C42,C43,C44,C45,C46,C47,C48,C49,C5,C52,C53,C54,C55,C56,C57,C58,C59,C6,C60,C61,C63,C64,C65,C66,C67,C69,C70,C71,C72,C73,C74,C75,C76,C78,C79,C8,C80,C81,C82,C83,C84,C86,C87,C9,D1,D10,D11,D2,D3,D4,D5,D6,D7,D8,D9
`Chr2:67464305`	`T`	`TTA`	2bp_insertion	frameshift_variant	235	A1,A10,A11,A13,A14,A15,A16,A18,A19,A2,A20,A21,A22,A23,A24,A25,A3,A4,A5,A6,A7,A8,A9,B10,B100,B101,B102,B103,B104,B106,B107,B108,B109,B11,B110,B111,B113,B114,B115,B117,B118,B119,B12,B120,B121,B122,B123,B124,B125,B126,B127,B128,B129,B13,B130,B131,B132,B133,B134,B135,B136,B139,B14,B140,B15,B16,B17,B18,B19,B2,B20,B21,B22,B23,B24,B25,B26,B27,B29,B3,B30,B31,B33,B34,B35,B36,B37,B4,B40,B41,B42,B43,B44,B45,B46,B47,B48,B49,B5,B51,B52,B54,B55,B56,B57,B58,B59,B6,B60,B61,B62,B63,B64,B65,B66,B67,B68,B69,B7,B70,B71,B72,B73,B75,B76,B77,B78,B79,B8,B80,B81,B82,B83,B84,B85,B86,B88,B89,B9,B90,B91,B92,B93,B95,B96,B97,B98,B99,C1,C10,C12,C13,C14,C15,C16,C17,C18,C19,C2,C20,C21,C22,C23,C24,C25,C26,C27,C29,C30,C31,C32,C33,C34,C35,C36,C37,C38,C39,C4,C40,C42,C43,C44,C45,C46,C47,C48,C49,C5,C52,C53,C54,C55,C56,C57,C58,C59,C6,C60,C61,C63,C64,C65,C66,C67,C69,C70,C71,C72,C73,C74,C75,C76,C78,C79,C8,C80,C81,C82,C83,C84,C86,C87,C9,D1,D10,D11,D2,D3,D4,D5,D6,D7,D8,D9
`Chr2:67464391`	`TG`	`T`	1bp_deletion	frameshift_variant	205	A1,A13,A14,A15,A18,A19,A2,A20,A21,A23,A24,A25,A4,A5,A6,A7,A9,B1,B10,B100,B101,B102,B104,B106,B107,B108,B109,B11,B110,B111,B115,B117,B118,B119,B12,B120,B121,B122,B123,B124,B125,B127,B128,B13,B130,B132,B133,B134,B135,B136,B139,B14,B140,B15,B16,B17,B18,B19,B2,B20,B21,B22,B23,B24,B25,B26,B27,B29,B3,B31,B33,B34,B35,B36,B39,B4,B41,B42,B43,B44,B46,B47,B48,B5,B51,B52,B54,B55,B56,B59,B6,B60,B61,B62,B63,B64,B65,B67,B68,B69,B7,B70,B71,B72,B73,B75,B76,B77,B78,B79,B80,B81,B83,B84,B86,B87,B88,B9,B90,B91,B92,B93,B96,B97,B98,B99,C1,C10,C11,C12,C13,C15,C16,C17,C18,C19,C2,C20,C21,C22,C23,C24,C25,C26,C27,C29,C30,C32,C33,C34,C35,C36,C37,C39,C40,C41,C44,C45,C46,C48,C49,C5,C50,C53,C54,C55,C56,C57,C58,C59,C6,C60,C61,C63,C64,C65,C66,C67,C69,C71,C72,C73,C74,C75,C76,C78,C79,C8,C80,C82,C83,C84,C85,C86,C87,D1,D10,D11,D2,D4,D5,D6,D7,D8,D9
`Chr2:67464398`	`A`	`AG`	1bp_insertion	frameshift_variant	203	A1,A13,A14,A15,A18,A19,A2,A20,A21,A23,A24,A25,A4,A5,A6,A7,A9,B1,B10,B100,B101,B102,B104,B106,B107,B108,B109,B11,B110,B111,B115,B117,B118,B119,B12,B120,B121,B122,B123,B124,B125,B127,B128,B13,B130,B132,B133,B134,B135,B136,B139,B14,B140,B15,B16,B17,B18,B19,B2,B20,B21,B22,B23,B24,B25,B26,B27,B29,B3,B31,B33,B34,B35,B36,B39,B4,B41,B42,B43,B44,B46,B47,B48,B5,B51,B52,B54,B55,B59,B6,B60,B61,B62,B63,B64,B65,B67,B68,B69,B7,B70,B71,B72,B73,B75,B76,B77,B78,B79,B80,B81,B83,B84,B86,B87,B88,B9,B90,B91,B92,B93,B96,B97,B98,B99,C1,C10,C11,C12,C13,C15,C16,C17,C18,C19,C2,C20,C21,C22,C23,C24,C25,C26,C27,C29,C30,C32,C33,C34,C35,C36,C37,C39,C40,C41,C44,C45,C46,C48,C49,C5,C50,C53,C55,C56,C57,C58,C59,C6,C60,C61,C63,C64,C65,C66,C67,C69,C71,C72,C73,C74,C75,C76,C78,C79,C8,C80,C82,C83,C84,C85,C86,C87,D1,D10,D11,D2,D4,D5,D6,D7,D8,D9
`Chr2:67464758`	`CG`	`C`	1bp_deletion	frameshift_variant	147	A11,A13,A14,A15,A20,A21,A22,A23,A24,A25,A4,A5,A9,B1,B10,B101,B102,B105,B106,B109,B11,B113,B114,B115,B119,B12,B122,B123,B125,B129,B130,B131,B132,B135,B136,B14,B140,B15,B16,B17,B18,B19,B2,B22,B24,B25,B26,B27,B3,B30,B31,B33,B34,B35,B36,B37,B38,B40,B44,B45,B46,B5,B51,B54,B55,B56,B57,B6,B60,B61,B62,B63,B65,B67,B68,B69,B7,B73,B76,B77,B78,B8,B81,B82,B84,B86,B89,B92,B96,B98,C10,C11,C13,C14,C15,C16,C18,C19,C2,C20,C21,C23,C25,C27,C29,C31,C32,C34,C35,C37,C39,C41,C43,C44,C47,C48,C49,C50,C52,C53,C55,C56,C57,C58,C61,C63,C64,C65,C67,C68,C72,C73,C75,C76,C78,C8,C81,C83,C87,D1,D10,D11,D2,D3,D6,D7,D9
`Chr2:67464760`	`AT`	`A`	1bp_deletion	frameshift_variant	147	A11,A13,A14,A15,A20,A21,A22,A23,A24,A25,A4,A5,A9,B1,B10,B101,B102,B105,B106,B109,B11,B113,B114,B115,B119,B12,B122,B123,B125,B129,B130,B131,B132,B135,B136,B14,B140,B15,B16,B17,B18,B19,B2,B22,B24,B25,B26,B27,B3,B30,B31,B33,B34,B35,B36,B37,B38,B40,B44,B45,B46,B5,B51,B54,B55,B56,B57,B6,B60,B61,B62,B63,B65,B67,B68,B69,B7,B73,B76,B77,B78,B8,B81,B82,B84,B86,B89,B92,B96,B98,C10,C11,C13,C14,C15,C16,C18,C19,C2,C20,C21,C23,C25,C27,C29,C31,C32,C34,C35,C37,C39,C41,C43,C44,C47,C48,C49,C50,C52,C53,C55,C56,C57,C58,C61,C63,C64,C65,C67,C68,C72,C73,C75,C76,C78,C8,C81,C83,C87,D1,D10,D11,D2,D3,D6,D7,D9
`Chr2:67464781`	`GTA`	`G`	2bp_deletion	frameshift_variant	150	A11,A13,A14,A15,A20,A21,A22,A23,A24,A25,A4,A5,A9,B1,B10,B101,B102,B105,B106,B109,B11,B113,B114,B115,B119,B12,B122,B123,B125,B129,B130,B131,B132,B135,B136,B14,B140,B15,B16,B17,B18,B19,B2,B22,B24,B25,B26,B27,B3,B30,B31,B33,B34,B35,B36,B37,B38,B40,B44,B45,B46,B5,B51,B54,B55,B56,B57,B6,B60,B61,B62,B63,B64,B65,B67,B68,B69,B7,B73,B76,B77,B78,B8,B81,B82,B84,B86,B89,B92,B96,B98,C10,C11,C13,C14,C15,C16,C18,C19,C2,C20,C21,C23,C25,C27,C28,C29,C31,C32,C34,C35,C37,C39,C41,C43,C44,C47,C48,C49,C50,C52,C53,C55,C56,C57,C58,C61,C63,C64,C65,C67,C68,C72,C73,C75,C76,C78,C8,C81,C83,C86,C87,D1,D10,D11,D2,D3,D6,D7,D9
`Chr2:67465176`	`TA`	`T`	1bp_deletion	frameshift_variant	3	B14,B37,C18
`Chr2:67465176`	`TA`	`T`	1bp_deletion	CDS_variant	3	B14,B37,C18
`Chr2:67465189`	`G`	`A`	EMS_canonical_SNV	CDS_variant	3	B14,B37,C18
`Chr2:67465240`	`C`	`T`	EMS_canonical_SNV	CDS_variant	4	B14,B37,C18,D2

进入 EMS 突变库

预测功能结构域

结构域结果来自 Pfam-A HMM 数据库和 HMMER hmmscan；位置为对应蛋白序列上的氨基酸坐标。

XP_057790477.1

1104 aa

552

1104

PhoLip_ATPase_N

Cation_ATPase

Hydrolase

Hydrolase_3

PhoLip_ATPase_C

PF16209 PhoLip_ATPase_N 5-70 aa PF13246 Cation_ATPase 427-615 aa PF00702 Hydrolase 565-764 aa PF08282 Hydrolase_3 689-768 aa PF16212 PhoLip_ATPase_C 778-1015 aa

XP_057790478.1

933 aa

466

933

Cation_ATPase

Hydrolase

Hydrolase_3

PhoLip_ATPase_C

PF13246 Cation_ATPase 256-444 aa PF00702 Hydrolase 394-593 aa PF08282 Hydrolase_3 564-597 aa PF16212 PhoLip_ATPase_C 607-844 aa

Protein ID	来源	结构域编号	结构域名称	类型	起始 aa	终止 aa	E-value	Score	说明
`XP_057790477.1`	Pfam	`PF16209`	PhoLip_ATPase_N	Family	5	70	3e-24	85.2	Phospholipid-translocating ATPase N-terminal
`XP_057790477.1`	Pfam	`PF13246`	Cation_ATPase	Family	427	615	6.3e-16	59.4	P-type ATPase, cytoplasmic domain N
`XP_057790477.1`	Pfam	`PF00702`	Hydrolase	Domain	565	764	2.4e-12	48.4	haloacid dehalogenase-like hydrolase
`XP_057790477.1`	Pfam	`PF08282`	Hydrolase_3	Domain	689	768	2.8e-05	24.7	haloacid dehalogenase-like hydrolase
`XP_057790477.1`	Pfam	`PF16212`	PhoLip_ATPase_C	Family	778	1015	2.6e-63	214.8	Phospholipid-translocating P-type ATPase C-terminal
`XP_057790478.1`	Pfam	`PF13246`	Cation_ATPase	Family	256	444	4.1e-16	60.0	P-type ATPase, cytoplasmic domain N
`XP_057790478.1`	Pfam	`PF00702`	Hydrolase	Domain	394	593	1.9e-12	48.7	haloacid dehalogenase-like hydrolase
`XP_057790478.1`	Pfam	`PF08282`	Hydrolase_3	Domain	564	597	2.1e-05	25.1	haloacid dehalogenase-like hydrolase
`XP_057790478.1`	Pfam	`PF16212`	PhoLip_ATPase_C	Family	607	844	2.4e-63	214.9	Phospholipid-translocating P-type ATPase C-terminal

cDNA / CDS / Protein 序列

下载基因组 DNA（仅基因区域）

每个公开基因均提供参考注释对应的转录本序列；蛋白编码基因另提供 CDS 和蛋白序列。非编码 RNA 不适用 CDS 或蛋白下载。真实 accession 的版本后缀予以保留。

cDNA

2 records

下载 cDNA FASTA

XM_057934494.1
TGATGTTCTTTTTTTTTTTTTAGGAAAACCTACTTGATGTTCTTAAAATATTTGACCATTTTTCCATGTTTCAGTATATATTTTAAATTTTAAATTTGTAATTAATGAGTATATTTTTTTAGAAGTTGGTATATTCCATTTTCACACAAAAAATGTAATGCAAAATATTCAACATCTGGATCATCATCATCTTCTTCCCTTTCTTTGAGACGAATGAATTCCTCTTCGTCCGCTGCTATTGATATCTCCAACAGCAGAAA...

XM_057934495.1
TTGTATCGGAAACATAGTTTGGCTCCGTGAAAATGATGAAGTTCCTTGTGATCTTGTGTTACTTGGCACAGCTGATCCACAAGGGTTTTGCTATGTGGAGCAGCACTAGATGGTGAAACTGACCTAAAGACACGGTCAATACCTTCTGCTTGCATGGGAATAGATGTTGACTTATTGCACAAAATAAAGGGTGTAATTGAGTGTCCCAGTCCAGATAAAGATATTAGGAGGTTTGATGCAAACATGCGACTGTTTCCTCC...

CDS

2 records

下载 CDS FASTA

LOC131007586
ATGAAGCGATATGTATACATAAATGATGACAATCTAGCACAAGATCTCTACTGTGACAATCGTATATCAAATAGAAAGTATACTATATGGAATTTTCTCCCCAAAAATCTATGGGAACAATTCAGCCGTTTTATGAATCAATACTTTTTGTTGATTGCTTGCCTTCAACTCTGGTCACTCATTACTCCTGTCAATCCTGCTAGTACTTGGGGTCCTCTTATATTCATATTTGCAGTCTCTGCAAGTAAAGAAGCATGGGA...

LOC131007586
ATGGGAATAGATGTTGACTTATTGCACAAAATAAAGGGTGTAATTGAGTGTCCCAGTCCAGATAAAGATATTAGGAGGTTTGATGCAAACATGCGACTGTTTCCTCCATTTCTCGATAATGATGTTTTCCCCTTGACAATTAAAAATACACTTCTTCAATCATGCTACTTAAGGAACACAGAGTGGGCATGTGGAGTTGCTGTATACACAGGCAATCAAACTAAGCTGGGCATGTGTAGGGGTATACCTGAACCAAAGCT...

Protein

2 records

下载 Protein FASTA

XP_057790477.1
MKRYVYINDDNLAQDLYCDNRISNRKYTIWNFLPKNLWEQFSRFMNQYFLLIACLQLWSLITPVNPASTWGPLIFIFAVSASKEAWDDYNRYLSDKKANEKEVWIVRHGIRKLIQAQNICIGNIVWLRENDEVPCDLVLLGTADPQGFCYVETAALDGETDLKTRSIPSACMGIDVDLLHKIKGVIECPSPDKDIRRFDANMRLFPPFLDNDVFPLTIKNTLLQSCYLRNTEWACGVAVYTGNQTKLGMCRGIPEPKLTA...

XP_057790478.1
MGIDVDLLHKIKGVIECPSPDKDIRRFDANMRLFPPFLDNDVFPLTIKNTLLQSCYLRNTEWACGVAVYTGNQTKLGMCRGIPEPKLTAVDAMIDKLTGAIFVFQIVVVIVLGIAGNVWKDTEGRKLWYVRYPKEGPWYELLVIPLRFELLCSIMIPISIKVSLDLVKSLYAKFIDWDDQMVDPETGIRSNATNTAISEDLGQVEYILTDKTGTLTENKMIFKRCCISGRFYGNENGDALTDAQLLNAVSTGSADVIQFL...

上下游序列下载

upstream/downstream 最大各 10000 bp。负链基因会自动反向互补，使最终 FASTA 为转录方向 5′→3′。

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