Gene Card 基因详情

支持统一新 ID、NCBI Gene ID、GeneID、locus_tag、Transcript ID、Protein ID，以及已人工核对的文献基因名查询。页面会先解析到丹参统一基因，再整合坐标、序列、注释、亚细胞定位、EMS 突变和下载入口。

当前解析结果

`SmilChr02G004512`

染色体: Chr02 坐标: 67645842-67654174 链方向: + 类型: protein_coding

基本信息

统一新 Gene ID	`SmilChr02G004512`
名称	SmilChr02G004512
描述	uncharacterized protein At2g39795, mitochondrial-like
染色体 / SeqID	Chr02 / NC_080388.1
坐标与链方向	67645842 - 67654174 / `+`

ID 对照

NCBI Gene ID	`LOC131011156`
GeneID	`131011156`
locus_tag	`-`
NCBI Name	`LOC131011156`
原始查询	`SmilChr02G004512`

查看完整 ID 对照表

功能注释

来源	GFF basic annotation; NCBI GO GAF; Pfam-A/HMMER; Arabidopsis/Rice homolog
描述	Mitochondrial glycoprotein family protein [Source:NCBI gene (formerly Entrezgene);Acc:838157]; symbol=AT1G15870; hit=AT1G15870; species=arabidopsis; confidence=high
产物	Mitochondrial glycoprotein family protein [Source:NCBI gene (formerly Entrezgene);Acc:838157]; symbol=AT1G15870; hit=AT1G15870; species=arabidopsis; confidence=high
Arabidopsis	`AT1G15870` (AT1G15870) Mitochondrial glycoprotein family protein [Source:NCBI gene (formerly Entrezgene);Acc:838157] identity=58.1; qcov=0.894; evalue=4.74e-81; confidence=high
Rice	`Os08g0439900` - identity=40.3; qcov=1.07; evalue=8.64e-49; confidence=medium
GO	GO:0005759 (mitochondrial matrix)
KEGG	-
Pfam	PF02330 (MAM33)
InterPro	-
eggNOG	-
NR	GeneID:131011156

打开注释模块

亚细胞定位 Top 5

Rank	定位位置	中文	Score	Protein ID
1	Mitochondrion	线粒体	1.00000	`XP_057794935.1`
2	Mitochondrion matrix	线粒体基质	0.20000	`XP_057794935.1`
3	Nucleus	细胞核	0.00000	`XP_057794935.1`
4	Chromosome	染色体	0.00000	`XP_057794935.1`
5	Centromere	着丝粒	0.00000	`XP_057794935.1`

进入亚细胞定位查询

EMS 诱变突变

下表显示该基因在丹参 EMS 材料中的前 12 个候选突变；完整结果可进入 EMS 突变库继续筛选或下载。

位置	REF	ALT	类型	影响	携带材料数	材料
`Chr2:67650088`	`C`	`T`	EMS_canonical_SNV	CDS_variant	3	B129,C64,C66
`Chr2:67650089`	`C`	`T`	EMS_canonical_SNV	CDS_variant	3	A11,B35,D10
`Chr2:67650092`	`C`	`T`	EMS_canonical_SNV	CDS_variant	2	B121,C80
`Chr2:67650162`	`G`	`A`	EMS_canonical_SNV	CDS_variant	2	B121,C80
`Chr2:67653497`	`C`	`T`	EMS_canonical_SNV	CDS_variant	1	B73
`Chr2:67653699`	`G`	`A`	EMS_canonical_SNV	CDS_variant	1	C77
`Chr2:67653702`	`C`	`T`	EMS_canonical_SNV	CDS_variant	1	D6

进入 EMS 突变库

预测功能结构域

结构域结果来自 Pfam-A HMM 数据库和 HMMER hmmscan；位置为对应蛋白序列上的氨基酸坐标。

XP_057794935.1

227 aa

114

227

MAM33

PF02330 MAM33 53-224 aa

XP_057794936.1

227 aa

114

227

MAM33

PF02330 MAM33 53-224 aa

Protein ID	来源	结构域编号	结构域名称	类型	起始 aa	终止 aa	E-value	Score	说明
`XP_057794935.1`	Pfam	`PF02330`	MAM33	Domain	53	224	2.5e-34	119.8	Mitochondrial glycoprotein
`XP_057794936.1`	Pfam	`PF02330`	MAM33	Domain	53	224	2.5e-34	119.8	Mitochondrial glycoprotein

cDNA / CDS / Protein 序列

下载基因组 DNA（仅基因区域）

每个公开基因均提供参考注释对应的转录本序列；蛋白编码基因另提供 CDS 和蛋白序列。非编码 RNA 不适用 CDS 或蛋白下载。真实 accession 的版本后缀予以保留。

cDNA

2 records

下载 cDNA FASTA

XM_057938953.1
TAAACCAGCGCCGCTTAATTCTTCCCTTTTTTCTTGTTTCTTTTCTTCTTTCTTTGCAGCTTCTTCTTCTCTCTTCTTTTTGTCTCTTTTCTTCTTTCTTTTCAGATTCTTCTTCTCTCTTCTTCTTTGTCTTCTTTTTCTTCTTCTTCTTCTTCTTCTTCTAATTTTTGAATCTAACCAAAACATAGTACCCTTCAAATCAATCCATAGAAATACCTATTATATTTCATATGTTGATACTTTTTTTTGTTTCTCTACAT...

XM_057938952.1
GTTTACAGTTACAGACATCGCAAAGCGCCGCCTTCACCTCTAATCCCTATTTCTTCCTATTCTCACGCTACCAGCTCAGCTCGTCTGCAATCTCTCTCTGTTTTCCGCCACTCGTCGCCCCCTCCGGCCCACGCCGCTCGCCTCGAAATCTCTACAGCAACAGCCTGCGCCGTGCTCCGCCTCACTGTGTAGCCTATCAGTTTTCGTCGTCCTGTTTCCTCCGGCCTCGGCCCATCCGTCCGGCGACTCTTTAGCAGCTC...

CDS

2 records

下载 CDS FASTA

LOC131011156
ATGGCTCATCGTCTTGTTCGAGGATTACGAGGGGCCGTAAGAACTCTTGTCTTTCACCAACCCCCAAAACCCCTCACCCAGTTTTTGACTCCAACTAGAAATTACGTCAACGATATGCGAAAATCGGCCTTCGAGGGCAACATTGCTCGCCTCATTCGGAGCGAAATCCAGTACGAGCTCGACCATTCCCCGCCGTCTGTGCCTATACCAGAATTCAATTCATTCAAGGTTGATGAACTACCAGGGGAGCAGTGGATTCG...

Protein

2 records

下载 Protein FASTA

XP_057794935.1
MAHRLVRGLRGAVRTLVFHQPPKPLTQFLTPTRNYVNDMRKSAFEGNIARLIRSEIQYELDHSPPSVPIPEFNSFKVDELPGEQWIRLSRKFGEDEEIKIEVTMFDGSVPMKMHDDKEDVKLHVTLIVDVMKGKDGDILEFVCSGWPGCIEIRNVFIRGQGRLKGRPYMGPQFKELDDELQDSLYDFLEARGVDDELAEFLHAYMRYKDKNEYIRWMESMKTYIQKK

XP_057794936.1
MAHRLVRGLRGAVRTLVFHQPPKPLTQFLTPTRNYVNDMRKSAFEGNIARLIRSEIQYELDHSPPSVPIPEFNSFKVDELPGEQWIRLSRKFGEDEEIKIEVTMFDGSVPMKMHDDKEDVKLHVTLIVDVMKGKDGDILEFVCSGWPGCIEIRNVFIRGQGRLKGRPYMGPQFKELDDELQDSLYDFLEARGVDDELAEFLHAYMRYKDKNEYIRWMESMKTYIQKK

上下游序列下载

upstream/downstream 最大各 10000 bp。负链基因会自动反向互补，使最终 FASTA 为转录方向 5′→3′。

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JBrowse

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