Gene Card 基因详情

支持统一新 ID、NCBI Gene ID、GeneID、locus_tag、Transcript ID、Protein ID,以及已人工核对的文献基因名查询。页面会先解析到丹参统一基因,再整合坐标、序列、注释、亚细胞定位、EMS 突变和下载入口。
示例

当前解析结果

SmilChr02G004522

染色体: Chr02 坐标: 67778925-67780760 链方向: + 类型: protein_coding

基本信息

统一新 Gene IDSmilChr02G004522
名称SmilChr02G004522
描述CBL-interacting serine/threonine-protein kinase 5-like
染色体 / SeqIDChr02 / NC_080388.1
坐标与链方向67778925 - 67780760 / +

ID 对照

NCBI Gene IDLOC131008513
GeneID131008513
locus_tag-
NCBI NameLOC131008513
原始查询SmilChr02G004522

查看完整 ID 对照表

功能注释

来源GFF basic annotation; NCBI GO GAF; Pfam-A/HMMER; Arabidopsis/Rice homolog
描述CBL-interacting serine/threonine-protein kinase 5-like
产物CBL-interacting serine/threonine-protein kinase 5-like
ArabidopsisAT5G25110 (CIPK25)
CBL-interacting protein kinase 25 [Source:NCBI gene (formerly Entrezgene);Acc:832582]
identity=69.2; qcov=0.982; evalue=0; confidence=high
RiceOs09g0418000 (OsCIPK16)
-
identity=62.3; qcov=0.977; evalue=0; confidence=high
GOGO:0004672 (protein kinase activity); GO:0005524 (ATP binding); GO:0006468 (protein phosphorylation); GO:0007165 (signal transduction)
KEGG-
PfamPF00069 (Pkinase); PF03822 (NAF); PF07714 (PK_Tyr_Ser-Thr)
InterPro-
eggNOG-
NRGeneID:131008513

打开注释模块

亚细胞定位 Top 5

Rank定位位置中文ScoreProtein ID
1 Cytosol 细胞质基质 1.00000 XP_057791367.1
2 Nucleus 细胞核 0.60000 XP_057791367.1
3 Cytoplasm 细胞质 0.60000 XP_057791367.1
4 Cell membrane 细胞膜 0.20000 XP_057791367.1
5 Chromosome 染色体 0.00000 XP_057791367.1

进入亚细胞定位查询

EMS 诱变突变

下表显示该基因在丹参 EMS 材料中的前 12 个候选突变;完整结果可进入 EMS 突变库继续筛选或下载。

位置 REF ALT 类型 影响 携带材料数 材料
Chr2:67779345 TG T 1bp_deletion frameshift_variant 1 C31
Chr2:67779345 TG T 1bp_deletion CDS_variant 1 C31
Chr2:67779682 C T EMS_canonical_SNV CDS_variant 4 B46,B48,B89,C40
Chr2:67779919 C T EMS_canonical_SNV CDS_variant 1 D4
Chr2:67780159 G A EMS_canonical_SNV CDS_variant 3 A18,B33,C85
Chr2:67780220 G A EMS_canonical_SNV CDS_variant 1 C24
Chr2:67780268 G A EMS_canonical_SNV CDS_variant 3 A18,B120,C20
Chr2:67780291 G A EMS_canonical_SNV CDS_variant 1 B73
Chr2:67780341 C T EMS_canonical_SNV CDS_variant 1 C24
Chr2:67780375 G A EMS_canonical_SNV CDS_variant 1 D4
Chr2:67780407 C T EMS_canonical_SNV CDS_variant 1 C1
Chr2:67780408 G A EMS_canonical_SNV CDS_variant 1 D4

进入 EMS 突变库

预测功能结构域

结构域结果来自 Pfam-A HMM 数据库和 HMMER hmmscan;位置为对应蛋白序列上的氨基酸坐标。

XP_057791367.1
437 aa
N
1
218
437
Pkinase
PK_Tyr_Ser-Thr
NAF
C
PF00069 Pkinase 17-271 aa PF07714 PK_Tyr_Ser-Thr 18-267 aa PF03822 NAF 304-359 aa
Protein ID 来源 结构域编号 结构域名称 类型 起始 aa 终止 aa E-value Score 说明
XP_057791367.1 Pfam PF00069 Pkinase Domain 17 271 7.4e-78 262.3 Protein kinase domain
XP_057791367.1 Pfam PF07714 PK_Tyr_Ser-Thr Domain 18 267 3.8e-40 138.5 Protein tyrosine and serine/threonine kinase
XP_057791367.1 Pfam PF03822 NAF Domain 304 359 2.7e-17 63.4 NAF domain

cDNA / CDS / Protein 序列

下载基因组 DNA(仅基因区域)

每个公开基因均提供参考注释对应的转录本序列;蛋白编码基因另提供 CDS 和蛋白序列。非编码 RNA 不适用 CDS 或蛋白下载。真实 accession 的版本后缀予以保留。

cDNA

1 records

下载 cDNA FASTA
XM_057935384.1
ATTAATGAGTATTTAGAGAAATATTTAAATACACATAATATATAGAATTCATGATTAATTAAGAGAATAAAAAATGAAATAATGCTGCAGGTGGCCCATTTCCCTTTCACAATACCACTATAACTTGTAGCAGCCCAAACCACCTCTCCCTCTCTCTCCCAAGAGAGCAAAAACAAAACAAAAATAAATCTCTACTGCGCAACCACACTAAAACGCCATTCCACCACCGCTACCGCCACCGCCGCCGTCTCAAATTAGAC...

CDS

1 records

下载 CDS FASTA
LOC131008513
ATGGAAGACCACCAAACATGCGGCGGCCGCAACATCATCTTCGGCAAATACGAAATGGGGCGCCTCCTCGGCAAAGGCACGTTCGCGAAGGTGTACCACGGCCGCGACCTGAAGACATCGGAGAGCGTGGCCATCAAAGTGATTAGCAAGGATCAGGTGAAGCAGGAAGGGCTAATGGAGCAAATCACGCGCGAGATCTCGGTGATGCGGCTGGTCCGCCACCCCAACGTGGTGGAGATAAAGGAGGTGATGGCCACGAA...

Protein

1 records

下载 Protein FASTA
XP_057791367.1
MEDHQTCGGRNIIFGKYEMGRLLGKGTFAKVYHGRDLKTSESVAIKVISKDQVKQEGLMEQITREISVMRLVRHPNVVEIKEVMATKQKIFFVMEYVKGGELFAKVARGKLKEDAARKYFQQLVSAIDFCHSRGVSHRDLKPENLLLDEDGNLKVSDFGLSALPEHHRNDGLLHTQCGTPAYVAPEVLRKKGYDGAMADIWSCGVILYVLLAGFLPFQDENVMKMYTKIFKAEFSIPPWISHEAKRLISRLLVANPEKRI...

上下游序列下载

upstream/downstream 最大各 10000 bp。负链基因会自动反向互补,使最终 FASTA 为转录方向 5′→3′。

下载 upstream 下载 downstream 下载 upstream + gene + downstream

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