当前解析结果
SmilChr02G004525| 统一新 Gene ID | SmilChr02G004525 |
|---|---|
| 名称 | SmilChr02G004525 |
| 描述 | photosynthetic NDH subunit of subcomplex B 1, chloroplastic |
| 染色体 / SeqID | Chr02 / NC_080388.1 |
| 坐标与链方向 | 67838849 - 67840925 / - |
| NCBI Gene ID | LOC131008517 |
|---|---|
| GeneID | 131008517 |
| locus_tag | - |
| NCBI Name | LOC131008517 |
| 原始查询 | SmilChr02G004525 |
| 来源 | GFF basic annotation; NCBI GO GAF; Arabidopsis/Rice homolog |
|---|---|
| 描述 | photosynthetic NDH subunit of subcomplex B 1, chloroplastic |
| 产物 | photosynthetic NDH subunit of subcomplex B 1%2C chloroplastic |
| Arabidopsis | AT1G15980 (PnsB1)NDH-dependent cyclic electron flow 1 [Source:NCBI gene (formerly Entrezgene);Acc:838168] identity=73; qcov=0.978; evalue=0; confidence=high |
| Rice | Os08g0276100- identity=62.8; qcov=0.966; evalue=0; confidence=high |
| GO | GO:0009507 (chloroplast); GO:0009773 (photosynthetic electron transport in photosystem I); GO:0010598 (NAD(P)H dehydrogenase complex (plastoquinone)) |
| KEGG | - |
| Pfam | - |
| InterPro | - |
| eggNOG | - |
| NR | GeneID:131008517 |
| Rank | 定位位置 | 中文 | Score | Protein ID |
|---|---|---|---|---|
| 1 | Chloroplast | 叶绿体 | 1.00000 | XP_057791372.1 |
| 2 | Chloroplast stroma | 叶绿体基质 | 1.00000 | XP_057791372.1 |
| 3 | Chloroplast thylakoid | 类囊体 | 0.80000 | XP_057791373.1 |
| 4 | Chloroplast membrane | 叶绿体膜 | 0.20000 | XP_057791372.1 |
| 5 | Chloroplast thylakoid membrane | 类囊体膜 | 0.20000 | XP_057791373.1 |
下表显示该基因在丹参 EMS 材料中的前 12 个候选突变;完整结果可进入 EMS 突变库继续筛选或下载。
| 位置 | REF | ALT | 类型 | 影响 | 携带材料数 | 材料 |
|---|---|---|---|---|---|---|
Chr2:67838938 |
G |
A |
EMS_canonical_SNV | CDS_variant | 1 | B49 |
Chr2:67839536 |
C |
T |
EMS_canonical_SNV | CDS_variant | 1 | A18 |
Chr2:67839650 |
C |
T |
EMS_canonical_SNV | CDS_variant | 2 | C82,C86 |
Chr2:67839703 |
G |
A |
EMS_canonical_SNV | CDS_variant | 1 | B136 |
Chr2:67839773 |
C |
T |
EMS_canonical_SNV | CDS_variant | 3 | A18,B33,C85 |
Chr2:67840007 |
C |
T |
EMS_canonical_SNV | CDS_variant | 1 | D6 |
Chr2:67840044 |
G |
A |
EMS_canonical_SNV | CDS_variant | 2 | B109,B34 |
Chr2:67840127 |
G |
A |
EMS_canonical_SNV | CDS_variant | 5 | B104,B68,B69,C30,C40 |
Chr2:67840245 |
G |
A |
EMS_canonical_SNV | CDS_variant | 3 | C11,C69,C74 |
Chr2:67840274 |
C |
T |
EMS_canonical_SNV | CDS_variant | 3 | B126,B47,D10 |
Chr2:67840275 |
G |
A |
EMS_canonical_SNV | CDS_variant | 3 | C11,C69,C74 |
Chr2:67840286 |
C |
T |
EMS_canonical_SNV | CDS_variant | 3 | C11,C69,C74 |
每个公开基因均提供参考注释对应的转录本序列;蛋白编码基因另提供 CDS 和蛋白序列。非编码 RNA 不适用 CDS 或蛋白下载。真实 accession 的版本后缀予以保留。
2 records
下载 cDNA FASTA2 records
下载 CDS FASTA2 records
下载 Protein FASTAupstream/downstream 最大各 10000 bp。负链基因会自动反向互补,使最终 FASTA 为转录方向 5′→3′。