Gene Card 基因详情

支持统一新 ID、NCBI Gene ID、GeneID、locus_tag、Transcript ID、Protein ID，以及已人工核对的文献基因名查询。页面会先解析到丹参统一基因，再整合坐标、序列、注释、亚细胞定位、EMS 突变和下载入口。

当前解析结果

`SmilChr02G004531`

染色体: Chr02 坐标: 67880377-67885206 链方向: - 类型: protein_coding

基本信息

统一新 Gene ID	`SmilChr02G004531`
名称	SmilChr02G004531
描述	magnesium transporter MRS2-1
染色体 / SeqID	Chr02 / NC_080388.1
坐标与链方向	67880377 - 67885206 / `-`

ID 对照

NCBI Gene ID	`LOC131008520`
GeneID	`131008520`
locus_tag	`-`
NCBI Name	`LOC131008520`
原始查询	`SmilChr02G004531`

查看完整 ID 对照表

功能注释

来源	GFF basic annotation; NCBI GO GAF; Pfam-A/HMMER; Arabidopsis/Rice homolog
描述	magnesium transporter MRS2-1
产物	magnesium transporter MRS2-1
Arabidopsis	`AT1G16010` (MGT2) magnesium transporter 2 [Source:NCBI gene (formerly Entrezgene);Acc:838171] identity=86.1; qcov=1; evalue=0; confidence=high
Rice	`Os06g0650800` (OsMGT) - identity=76.4; qcov=0.944; evalue=0; confidence=high
GO	GO:0015095 (magnesium ion transmembrane transporter activity); GO:0015693 (magnesium ion transport); GO:0016020 (membrane); GO:0055085 (transmembrane transport)
KEGG	-
Pfam	PF22099 (MRS2-like)
InterPro	-
eggNOG	-
NR	GeneID:131008520

打开注释模块

亚细胞定位 Top 5

Rank	定位位置	中文	Score	Protein ID
1	Cell membrane	细胞膜	1.00000	`XP_057791376.1`
2	Nucleus	细胞核	0.00000	`XP_057791376.1`
3	Chromosome	染色体	0.00000	`XP_057791376.1`
4	Centromere	着丝粒	0.00000	`XP_057791376.1`
5	Chromatin	染色质	0.00000	`XP_057791376.1`

进入亚细胞定位查询

EMS 诱变突变

下表显示该基因在丹参 EMS 材料中的前 12 个候选突变；完整结果可进入 EMS 突变库继续筛选或下载。

位置	REF	ALT	类型	影响	携带材料数	材料
`Chr2:67881534`	`GCT`	`G`	2bp_deletion	frameshift_variant	1	B133
`Chr2:67881534`	`GCT`	`G`	2bp_deletion	CDS_variant	1	B133
`Chr2:67883275`	`G`	`A`	EMS_canonical_SNV	CDS_variant	5	B17,B35,B90,B92,C82
`Chr2:67883331`	`C`	`T`	EMS_canonical_SNV	CDS_variant	1	B61

进入 EMS 突变库

预测功能结构域

结构域结果来自 Pfam-A HMM 数据库和 HMMER hmmscan；位置为对应蛋白序列上的氨基酸坐标。

XP_057791376.1

444 aa

222

444

MRS2-like

PF22099 MRS2-like 61-266 aa PF22099 MRS2-like 323-372 aa

XP_057791377.1

444 aa

222

444

MRS2-like

PF22099 MRS2-like 61-266 aa PF22099 MRS2-like 323-372 aa

Protein ID	来源	结构域编号	结构域名称	类型	起始 aa	终止 aa	E-value	Score	说明
`XP_057791376.1`	Pfam	`PF22099`	MRS2-like	Family	61	266	1.1e-33	117.2	Magnesium transporter MRS2-like
`XP_057791376.1`	Pfam	`PF22099`	MRS2-like	Family	323	372	1.1e-33	117.2	Magnesium transporter MRS2-like
`XP_057791377.1`	Pfam	`PF22099`	MRS2-like	Family	61	266	1.1e-33	117.2	Magnesium transporter MRS2-like
`XP_057791377.1`	Pfam	`PF22099`	MRS2-like	Family	323	372	1.1e-33	117.2	Magnesium transporter MRS2-like

cDNA / CDS / Protein 序列

下载基因组 DNA（仅基因区域）

每个公开基因均提供参考注释对应的转录本序列；蛋白编码基因另提供 CDS 和蛋白序列。非编码 RNA 不适用 CDS 或蛋白下载。真实 accession 的版本后缀予以保留。

cDNA

2 records

下载 cDNA FASTA

XM_057935394.1
AAATTTACCACCGAGTCGAACGAACTATAGGTGTTGTTGGGCCCCCAGAATCCAGGAAATATTTTACCATTTCTTTATTATGTTTATAATAATAATTGTTTTTTTTTTTTGAAACTGTTTATAATAATTATTGTTATTTCTACTTTCATTCCTTCAAACTTTTTTAAGGATTAAATGAAAATAATAAAATCAAAGTTAGAAACATAAAACATCACTCATCCTACTCCTAGTAATCAGTAACTTATCATTTGATTGTTTCT...

XM_057935393.1
CGAGTCGAACGAACTATAGGTGTTGTTGGGCCCCCAGAATCCAGGAAATATTTTACCATTTCTTTATTATGTTTATAATAATAATTGTTTTTTTTTTTTGAAACTGTTTATAATAATTATTGTTATTTCTACTTTCATTCCTTCAAACTTTTTTAAGGATTAAATGAAAATAATAAAATCAAAGTTAGAAACATAAAACATCACTCATCCTACTCCTAGTAATCAGTAACTTATCATTTGATTGTTTCTTCTTCTCCACT...

CDS

2 records

下载 CDS FASTA

LOC131008520
ATGGCAGACCTCAAAGAACGTCTGCTTCCACCAAAACCTGCGTCAGCTATAAATTTGAGAGATAATTCATTCAGGCCATCTGCCTCTGGCCGTATCCCATTTCAGGGAGTCGATGTTTCAGGCCTGAAGAAGCGTGGGCAAGGTCTTCGATCATGGATACGTGTTGATGTAACAGGGAATTCCCAAGTGATTGAGGTTGACAAGTTCAGTATGATGCGTCGATGTGATCTTCCTGCACGTGATCTAAGATTACTAGACCC...

Protein

2 records

下载 Protein FASTA

XP_057791376.1
MADLKERLLPPKPASAINLRDNSFRPSASGRIPFQGVDVSGLKKRGQGLRSWIRVDVTGNSQVIEVDKFSMMRRCDLPARDLRLLDPLFVYPSTILGREKAIVVNLEQIRCIITADEVLLLNSLDSYVLQYVVELQRRLQAAGVGEVWQSEGPDSGRRRGSRNFDNMFGNTSPDYLPFEFRALEVALEAACTFLDSQAAELEIEAYPLLDELTSKISTLNLERVRRLKSRLVALTRRVQKVRDEIEQLMDDDGDMAEMYL...

XP_057791377.1
MADLKERLLPPKPASAINLRDNSFRPSASGRIPFQGVDVSGLKKRGQGLRSWIRVDVTGNSQVIEVDKFSMMRRCDLPARDLRLLDPLFVYPSTILGREKAIVVNLEQIRCIITADEVLLLNSLDSYVLQYVVELQRRLQAAGVGEVWQSEGPDSGRRRGSRNFDNMFGNTSPDYLPFEFRALEVALEAACTFLDSQAAELEIEAYPLLDELTSKISTLNLERVRRLKSRLVALTRRVQKVRDEIEQLMDDDGDMAEMYL...

上下游序列下载

upstream/downstream 最大各 10000 bp。负链基因会自动反向互补，使最终 FASTA 为转录方向 5′→3′。

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JBrowse

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