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Gene Card 基因详情

支持统一新 ID、NCBI Gene ID、GeneID、locus_tag、Transcript ID、Protein ID，以及已人工核对的文献基因名查询。页面会先解析到丹参统一基因，再整合坐标、序列、注释、亚细胞定位、EMS 突变和下载入口。
示例

当前解析结果

SmilChr02G004533

染色体: Chr02 坐标: 67898323-67903155 链方向: - 类型: protein_coding

基本信息

统一新 Gene IDSmilChr02G004533
名称SmilChr02G004533
描述probable cinnamyl alcohol dehydrogenase 1
染色体 / SeqIDChr02 / NC_080388.1
坐标与链方向67898323 - 67903155 / -

ID 对照

NCBI Gene IDLOC131008526
GeneID131008526
locus_tag-
NCBI NameLOC131008526
原始查询SmilChr02G004533

查看完整 ID 对照表

功能注释

来源GFF basic annotation; NCBI GO GAF; KEGG smil; Pfam-A/HMMER; Arabidopsis/Rice homolog
描述probable cinnamyl alcohol dehydrogenase 1
产物probable cinnamyl alcohol dehydrogenase 1
ArabidopsisAT1G72680 (CAD1)
cinnamyl-alcohol dehydrogenase [Source:NCBI gene (formerly Entrezgene);Acc:843600]
identity=71.7; qcov=0.992; evalue=0; confidence=high
RiceOs10g0194200 (OsCAD1)
-
identity=67.5; qcov=1; evalue=1.38e-176; confidence=high
GOGO:0008270 (zinc ion binding); GO:0016616 (oxidoreductase activity, acting on the CH-OH group of donors, NAD or NADP as acceptor)
KEGGsmil00940 (Phenylpropanoid biosynthesis - Salvia miltiorrhiza (redroot sage)); smil01100 (Metabolic pathways - Salvia miltiorrhiza (redroot sage)); smil01110 (Biosynthesis of secondary metabolites - Salvia miltiorrhiza (redroot sage))
PfamPF00107 (ADH_zinc_N); PF08240 (ADH_N)
InterPro-
eggNOG-
NRGeneID:131008526

打开注释模块

亚细胞定位 Top 5

Rank定位位置中文ScoreProtein ID
1 Cytoplasm 细胞质 1.00000 XP_057791396.1
2 Nucleus 细胞核 0.60000 XP_057791396.1
3 Cytosol 细胞质基质 0.60000 XP_057791398.1
4 Chromosome 染色体 0.00000 XP_057791396.1
5 Centromere 着丝粒 0.00000 XP_057791396.1

进入亚细胞定位查询

EMS 诱变突变

下表显示该基因在丹参 EMS 材料中的前 12 个候选突变；完整结果可进入 EMS 突变库继续筛选或下载。

位置 REF ALT 类型 影响 携带材料数 材料
Chr2:67899912 C T EMS_canonical_SNV CDS_variant 1 C78
Chr2:67900562 C T EMS_canonical_SNV CDS_variant 2 B10,C54
Chr2:67900837 G A EMS_canonical_SNV CDS_variant 5 B106,B129,C1,C29,C5
Chr2:67900867 T TA 1bp_insertion frameshift_variant 7 A22,B117,B52,B76,C27,C41,C79
Chr2:67900987 G A EMS_canonical_SNV CDS_variant 1 C40
Chr2:67901172 G A EMS_canonical_SNV CDS_variant 1 C77
Chr2:67901175 G A EMS_canonical_SNV CDS_variant 1 D10
Chr2:67901520 C T EMS_canonical_SNV CDS_variant 1 D11

进入 EMS 突变库

预测功能结构域

结构域结果来自 Pfam-A HMM 数据库和 HMMER hmmscan；位置为对应蛋白序列上的氨基酸坐标。

XP_057791396.1
359 aa
N
1
180
359
ADH_N
ADH_zinc_N
C
PF08240 ADH_N 37-156 aa PF00107 ADH_zinc_N 196-318 aa
XP_057791397.1
359 aa
N
1
180
359
ADH_N
ADH_zinc_N
C
PF08240 ADH_N 37-156 aa PF00107 ADH_zinc_N 196-318 aa
XP_057791398.1
369 aa
N
1
184
369
ADH_N
ADH_zinc_N
C
PF08240 ADH_N 47-166 aa PF00107 ADH_zinc_N 206-328 aa
XP_057791399.1
353 aa
N
1
176
353
ADH_N
ADH_zinc_N
C
PF08240 ADH_N 31-150 aa PF00107 ADH_zinc_N 190-312 aa
XP_057791400.1
353 aa
N
1
176
353
ADH_N
ADH_zinc_N
C
PF08240 ADH_N 31-150 aa PF00107 ADH_zinc_N 190-312 aa
XP_057791401.1
353 aa
N
1
176
353
ADH_N
ADH_zinc_N
C
PF08240 ADH_N 31-150 aa PF00107 ADH_zinc_N 190-312 aa
XP_057791402.1
353 aa
N
1
176
353
ADH_N
ADH_zinc_N
C
PF08240 ADH_N 31-150 aa PF00107 ADH_zinc_N 190-312 aa
XP_057791403.1
353 aa
N
1
176
353
ADH_N
ADH_zinc_N
C
PF08240 ADH_N 31-150 aa PF00107 ADH_zinc_N 190-312 aa
XP_057791404.1
353 aa
N
1
176
353
ADH_N
ADH_zinc_N
C
PF08240 ADH_N 31-150 aa PF00107 ADH_zinc_N 190-312 aa
XP_057791405.1
353 aa
N
1
176
353
ADH_N
ADH_zinc_N
C
PF08240 ADH_N 31-150 aa PF00107 ADH_zinc_N 190-312 aa
XP_057791406.1
353 aa
N
1
176
353
ADH_N
ADH_zinc_N
C
PF08240 ADH_N 31-150 aa PF00107 ADH_zinc_N 190-312 aa
XP_057791407.1
353 aa
N
1
176
353
ADH_N
ADH_zinc_N
C
PF08240 ADH_N 31-150 aa PF00107 ADH_zinc_N 190-312 aa
XP_057791408.1
353 aa
N
1
176
353
ADH_N
ADH_zinc_N
C
PF08240 ADH_N 31-150 aa PF00107 ADH_zinc_N 190-312 aa
XP_057791410.1
353 aa
N
1
176
353
ADH_N
ADH_zinc_N
C
PF08240 ADH_N 31-150 aa PF00107 ADH_zinc_N 190-312 aa
XP_057791411.1
353 aa
N
1
176
353
ADH_N
ADH_zinc_N
C
PF08240 ADH_N 31-150 aa PF00107 ADH_zinc_N 190-312 aa
XP_057791412.1
353 aa
N
1
176
353
ADH_N
ADH_zinc_N
C
PF08240 ADH_N 31-150 aa PF00107 ADH_zinc_N 190-312 aa
Protein ID 来源 结构域编号 结构域名称 类型 起始 aa 终止 aa E-value Score 说明
XP_057791396.1 Pfam PF08240 ADH_N Domain 37 156 1.9e-24 86.6 Alcohol dehydrogenase GroES-like domain
XP_057791396.1 Pfam PF00107 ADH_zinc_N Domain 196 318 3.1e-18 66.7 Zinc-binding dehydrogenase
XP_057791397.1 Pfam PF08240 ADH_N Domain 37 156 1.9e-24 86.6 Alcohol dehydrogenase GroES-like domain
XP_057791397.1 Pfam PF00107 ADH_zinc_N Domain 196 318 3.1e-18 66.7 Zinc-binding dehydrogenase
XP_057791398.1 Pfam PF08240 ADH_N Domain 47 166 2e-24 86.5 Alcohol dehydrogenase GroES-like domain
XP_057791398.1 Pfam PF00107 ADH_zinc_N Domain 206 328 3.3e-18 66.6 Zinc-binding dehydrogenase
XP_057791399.1 Pfam PF08240 ADH_N Domain 31 150 1.8e-24 86.7 Alcohol dehydrogenase GroES-like domain
XP_057791399.1 Pfam PF00107 ADH_zinc_N Domain 190 312 3.1e-18 66.7 Zinc-binding dehydrogenase
XP_057791400.1 Pfam PF08240 ADH_N Domain 31 150 1.8e-24 86.7 Alcohol dehydrogenase GroES-like domain
XP_057791400.1 Pfam PF00107 ADH_zinc_N Domain 190 312 3.1e-18 66.7 Zinc-binding dehydrogenase
XP_057791401.1 Pfam PF08240 ADH_N Domain 31 150 1.8e-24 86.7 Alcohol dehydrogenase GroES-like domain
XP_057791401.1 Pfam PF00107 ADH_zinc_N Domain 190 312 3.1e-18 66.7 Zinc-binding dehydrogenase
XP_057791402.1 Pfam PF08240 ADH_N Domain 31 150 1.8e-24 86.7 Alcohol dehydrogenase GroES-like domain
XP_057791402.1 Pfam PF00107 ADH_zinc_N Domain 190 312 3.1e-18 66.7 Zinc-binding dehydrogenase
XP_057791403.1 Pfam PF08240 ADH_N Domain 31 150 1.8e-24 86.7 Alcohol dehydrogenase GroES-like domain
XP_057791403.1 Pfam PF00107 ADH_zinc_N Domain 190 312 3.1e-18 66.7 Zinc-binding dehydrogenase
XP_057791404.1 Pfam PF08240 ADH_N Domain 31 150 1.8e-24 86.7 Alcohol dehydrogenase GroES-like domain
XP_057791404.1 Pfam PF00107 ADH_zinc_N Domain 190 312 3.1e-18 66.7 Zinc-binding dehydrogenase
XP_057791405.1 Pfam PF08240 ADH_N Domain 31 150 1.8e-24 86.7 Alcohol dehydrogenase GroES-like domain
XP_057791405.1 Pfam PF00107 ADH_zinc_N Domain 190 312 3.1e-18 66.7 Zinc-binding dehydrogenase
XP_057791406.1 Pfam PF08240 ADH_N Domain 31 150 1.8e-24 86.7 Alcohol dehydrogenase GroES-like domain
XP_057791406.1 Pfam PF00107 ADH_zinc_N Domain 190 312 3.1e-18 66.7 Zinc-binding dehydrogenase
XP_057791407.1 Pfam PF08240 ADH_N Domain 31 150 1.8e-24 86.7 Alcohol dehydrogenase GroES-like domain
XP_057791407.1 Pfam PF00107 ADH_zinc_N Domain 190 312 3.1e-18 66.7 Zinc-binding dehydrogenase
XP_057791408.1 Pfam PF08240 ADH_N Domain 31 150 1.8e-24 86.7 Alcohol dehydrogenase GroES-like domain
XP_057791408.1 Pfam PF00107 ADH_zinc_N Domain 190 312 3.1e-18 66.7 Zinc-binding dehydrogenase
XP_057791410.1 Pfam PF08240 ADH_N Domain 31 150 1.8e-24 86.7 Alcohol dehydrogenase GroES-like domain
XP_057791410.1 Pfam PF00107 ADH_zinc_N Domain 190 312 3.1e-18 66.7 Zinc-binding dehydrogenase
XP_057791411.1 Pfam PF08240 ADH_N Domain 31 150 1.8e-24 86.7 Alcohol dehydrogenase GroES-like domain
XP_057791411.1 Pfam PF00107 ADH_zinc_N Domain 190 312 3.1e-18 66.7 Zinc-binding dehydrogenase
XP_057791412.1 Pfam PF08240 ADH_N Domain 31 150 1.8e-24 86.7 Alcohol dehydrogenase GroES-like domain
XP_057791412.1 Pfam PF00107 ADH_zinc_N Domain 190 312 3.1e-18 66.7 Zinc-binding dehydrogenase

cDNA / CDS / Protein 序列

下载基因组 DNA（仅基因区域）

每个公开基因均提供参考注释对应的转录本序列；蛋白编码基因另提供 CDS 和蛋白序列。非编码 RNA 不适用 CDS 或蛋白下载。真实 accession 的版本后缀予以保留。

cDNA

16 records

下载 cDNA FASTA
XM_057935421.1
AGAGAAAGTGTCGTAACTTAAGTGGTCCTACATAGTGTAGATGCCCTTAATCCATCTGCAAATTGCAGGTGCACTTTGATTAAGATTACGTTTGTGAATCTATCTGAATCCTGATCCCGCTTATCAACAGCTTCATCTACTCAGTGGAGAAACCTGTAACAGATTGAAATGGCCAGTGAAAATGGTGAATGCCTTGGATGGGCCGCGAGAGATCCCTCTGGAACTCTCTCTCCTTACCGATTTAGTCGCAGGTCTGTTGG...
XM_057935414.1
TATTTATTGCTTTCGATGACTACGTTGATTGAAATGGCCAGTGAAAATGGTGAATGCCTTGGATGGGCCGCGAGAGATCCCTCTGGAACTCTCTCTCCTTACCGATTTAGTCGCAGGTCTGTTGGTCCTGATGATATTTCTATAAGTATTCTGTACTGCGGAGTTTGTTATGCTGATGTTGTCTGGACTAGAAACGTAATGGGCCATTCAAATTATCCTTTGGTGCCCGGACATGAGATTGTTGGGGTTGTGAAGGAGGT...

CDS

16 records

下载 CDS FASTA
LOC131008526
ATGAAAAAGAGAGAATATTTATTGCTTTCGATGACTACGTTGATTGAAATGGCCAGTGAAAATGGTGAATGCCTTGGATGGGCCGCGAGAGATCCCTCTGGAACTCTCTCTCCTTACCGATTTAGTCGCAGGTCTGTTGGTCCTGATGATATTTCTATAAGTATTCTGTACTGCGGAGTTTGTTATGCTGATGTTGTCTGGACTAGAAACGTAATGGGCCATTCAAATTATCCTTTGGTGCCCGGACATGAGATTGTTGG...
LOC131008526
ATGACTACGTTGATTGAAATGGCCAGTGAAAATGGTGAATGCCTTGGATGGGCCGCGAGAGATCCCTCTGGAACTCTCTCTCCTTACCGATTTAGTCGCAGGTCTGTTGGTCCTGATGATATTTCTATAAGTATTCTGTACTGCGGAGTTTGTTATGCTGATGTTGTCTGGACTAGAAACGTAATGGGCCATTCAAATTATCCTTTGGTGCCCGGACATGAGATTGTTGGGGTTGTGAAGGAGGTGGGATCGAACGTTGA...

Protein

16 records

下载 Protein FASTA
XP_057791396.1
MTTLIEMASENGECLGWAARDPSGTLSPYRFSRRSVGPDDISISILYCGVCYADVVWTRNVMGHSNYPLVPGHEIVGVVKEVGSNVDRFKVGEHVGVGTYVNSCRQCEYCDSGIEVHCTKGSVYTFDGVDVDGTITKGGYSSYIVVHQRYCFRIPENYPPELAAPLLCAGITVYTPMVRHNMNQPGKSLGVIGLGGLGHLAVKFGKAFGLKVTVFSTSISKKDEALNLLGADCFVISSNEKEMKALENSLDFIINTASGG...
XP_057791397.1
MTTLIEMASENGECLGWAARDPSGTLSPYRFSRRSVGPDDISISILYCGVCYADVVWTRNVMGHSNYPLVPGHEIVGVVKEVGSNVDRFKVGEHVGVGTYVNSCRQCEYCDSGIEVHCTKGSVYTFDGVDVDGTITKGGYSSYIVVHQRYCFRIPENYPPELAAPLLCAGITVYTPMVRHNMNQPGKSLGVIGLGGLGHLAVKFGKAFGLKVTVFSTSISKKDEALNLLGADCFVISSNEKEMKALENSLDFIINTASGG...

上下游序列下载

upstream/downstream 最大各 10000 bp。负链基因会自动反向互补，使最终 FASTA 为转录方向 5′→3′。

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