Gene Card 基因详情

支持统一新 ID、NCBI Gene ID、GeneID、locus_tag、Transcript ID、Protein ID,以及已人工核对的文献基因名查询。页面会先解析到丹参统一基因,再整合坐标、序列、注释、亚细胞定位、EMS 突变和下载入口。
示例

当前解析结果

SmilChr02G004559

染色体: Chr02 坐标: 68111899-68113130 链方向: + 类型: protein_coding

基本信息

统一新 Gene IDSmilChr02G004559
名称SmilChr02G004559
描述uncharacterized SmilChr02G004559
染色体 / SeqIDChr02 / NC_080388.1
坐标与链方向68111899 - 68113130 / +

ID 对照

NCBI Gene IDLOC131008553
GeneID131008553
locus_tag-
NCBI NameLOC131008553
原始查询SmilChr02G004559

查看完整 ID 对照表

功能注释

来源GFF basic annotation; Arabidopsis/Rice homolog
描述NFU1 iron-sulfur cluster protein [Source:NCBI gene (formerly Entrezgene);Acc:830624]; symbol=AT5G07330; hit=AT5G07330; species=arabidopsis; confidence=medium
产物NFU1 iron-sulfur cluster protein [Source:NCBI gene (formerly Entrezgene);Acc:830624]; symbol=AT5G07330; hit=AT5G07330; species=arabidopsis; confidence=medium
ArabidopsisAT5G07330 (AT5G07330)
NFU1 iron-sulfur cluster protein [Source:NCBI gene (formerly Entrezgene);Acc:830624]
identity=40.5; qcov=0.988; evalue=5.13e-40; confidence=medium
RiceOs11g0533400
-
identity=47.2; qcov=0.655; evalue=1.47e-25; confidence=medium
GO-
KEGG-
Pfam-
InterPro-
eggNOG-
NRGeneID:131008553

打开注释模块

亚细胞定位 Top 5

Rank定位位置中文ScoreProtein ID
1 Mitochondrion 线粒体 1.00000 XP_057791447.1
2 Mitochondrion membrane 线粒体膜 1.00000 XP_057791447.1
3 Mitochondrion inner membrane 线粒体内膜 1.00000 XP_057791448.1
4 Nucleus 细胞核 0.00000 XP_057791447.1
5 Chromosome 染色体 0.00000 XP_057791447.1

进入亚细胞定位查询

EMS 诱变突变

下表显示该基因在丹参 EMS 材料中的前 12 个候选突变;完整结果可进入 EMS 突变库继续筛选或下载。

位置 REF ALT 类型 影响 携带材料数 材料
Chr2:68112138 C T EMS_canonical_SNV CDS_variant 1 B140
Chr2:68112247 G A EMS_canonical_SNV CDS_variant 2 B94,B98
Chr2:68112292 C T EMS_canonical_SNV CDS_variant 4 B53,B55,C16,C21
Chr2:68112849 A AT 1bp_insertion frameshift_variant 14 A6,B112,B139,B31,B41,B81,B9,C14,C54,C64,C66,C86,D1,D10
Chr2:68112899 G GT 1bp_insertion stop_gained,frameshift_variant 7 B126,B129,B94,C4,C75,D1,D6
Chr2:68112928 G A EMS_canonical_SNV CDS_variant 4 A21,B33,C8,C85
Chr2:68112933 G A EMS_canonical_SNV CDS_variant 1 B13
Chr2:68112941 G A EMS_canonical_SNV CDS_variant 1 B35
Chr2:68112959 C T EMS_canonical_SNV CDS_variant 1 C37

进入 EMS 突变库

预测功能结构域

当前发布数据中,此基因没有可展示的 Pfam 结构域命中。

进入结构域查询

cDNA / CDS / Protein 序列

下载基因组 DNA(仅基因区域)

每个公开基因均提供参考注释对应的转录本序列;蛋白编码基因另提供 CDS 和蛋白序列。非编码 RNA 不适用 CDS 或蛋白下载。真实 accession 的版本后缀予以保留。

cDNA

2 records

下载 cDNA FASTA
XM_057935464.1
AAAAAATTGAAAATAGTTATTGAGTTTAGAAAGTAAGATAAAAAGCATGAAGATGGTAGAAGTGACGTGTTGGTCGAAGCTGCTTCCACAGACGCTCTCTGCGCTTCATTGCTTGACAAGTGGCTCTTTCTGCATGCTAATCACTTCTCCCTAGAAACTTCCATTTCTATAAATTTTCTTATTCTCAATCAGTTCTGAATTGCACTCGATCACCAATTTCGGAAAAATGGCATTTCGGTCAGCGGCTTACTGGAAATCAA...
XM_057935465.1
AAAAAATTGAAAATAGTTATTGAGTTTAGAAAGTAAGATAAAAAGCATGAAGATGGTAGAAGTGACGTGTTGGTCGAAGCTGCTTCCACAGACGCTCTCTGCGCTTCATTGCTTGACAAGTGGCTCTTTCTGCATGCTAATCACTTCTCCCTAGAAACTTCCATTTCTATAAATTTTCTTATTCTCAATCAGTTCTGAATTGCACTCGATCACCAATTTCGGAAAAATGGCATTTCGGTCAGCGGCTTACTGGAAATCAA...

CDS

2 records

下载 CDS FASTA
LOC131008553
ATGGCATTTCGGTCAGCGGCTTACTGGAAATCAATGGTAAAAGTGGTTGGGAGTTGTTCGAGTTTCACGACATCAACTCTGCCCAAATTGAAAGCCTACGCCCCCGCCGCCACTCATGTTCGCCCCTCTTCAGCTTCAGGGGACTCTAAATCAAAGTTGGGTGCGAGGGGGGATATGTTTCCGGTGTTGATGGCGGTGGGGATGATCAGTCTGTCGGCGGGGTTTGGATTATTTACGGCGTGGCACCAGCTGGGGCGGGG...
LOC131008553
ATGGCATTTCGGTCAGCGGCTTACTGGAAATCAATGGTAAAAGTGGTTGGGAGTTGTTCGAGTTTCACGACATCAACTCTGCCCAAATTGAAAGCCTACGCCCCCGCCGCCACTCATGTTCGCCCCTCTTCAGCTTCAGGGGACTCTAAATCAAAGTTGGGTGCGAGGGGGGATATGTTTCCGGTGTTGATGGCGGTGGGGATGATCAGTCTGTCGGCGGGGTTTGGATTATTTACGGCGTGGCACCAGCTGGGGCGGGG...

Protein

2 records

下载 Protein FASTA
XP_057791447.1
MAFRSAAYWKSMVKVVGSCSSFTTSTLPKLKAYAPAATHVRPSSASGDSKSKLGARGDMFPVLMAVGMISLSAGFGLFTAWHQLGRGPNLYVKKSRRETIPEVVEPEHVAEEAEKFVKQSFFRKVAHIQELDRQNVMSDPLRGDVFTRYIFVFPELNGLSRVNYMKKESKMKYFMLVVAGQ
XP_057791448.1
MAFRSAAYWKSMVKVVGSCSSFTTSTLPKLKAYAPAATHVRPSSASGDSKSKLGARGDMFPVLMAVGMISLSAGFGLFTAWHQLGRGPNLYVKKSRRETIPEVVEPEHVAEEAEKFVKQSFFRKVAHIQELDRQNVMSDPLRGDVFTRAVKVETLRDAGVDPEPN

上下游序列下载

upstream/downstream 最大各 10000 bp。负链基因会自动反向互补,使最终 FASTA 为转录方向 5′→3′。

下载 upstream 下载 downstream 下载 upstream + gene + downstream

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