Gene Card 基因详情

支持统一新 ID、NCBI Gene ID、GeneID、locus_tag、Transcript ID、Protein ID，以及已人工核对的文献基因名查询。页面会先解析到丹参统一基因，再整合坐标、序列、注释、亚细胞定位、EMS 突变和下载入口。

当前解析结果

`SmilChr02G004564`

染色体: Chr02 坐标: 68151567-68156483 链方向: - 类型: protein_coding

基本信息

统一新 Gene ID	`SmilChr02G004564`
名称	SmilChr02G004564
描述	respiratory burst oxidase homolog protein C-like
染色体 / SeqID	Chr02 / NC_080388.1
坐标与链方向	68151567 - 68156483 / `-`

ID 对照

NCBI Gene ID	`LOC131008558`
GeneID	`131008558`
locus_tag	`-`
NCBI Name	`LOC131008558`
原始查询	`SmilChr02G004564`

查看完整 ID 对照表

功能注释

来源	GFF basic annotation; NCBI GO GAF; KEGG smil; Pfam-A/HMMER; Arabidopsis/Rice homolog
描述	respiratory burst oxidase homolog protein C-like
产物	respiratory burst oxidase homolog protein C-like
Arabidopsis	`AT5G47910` (RBOHD) respiratory burst oxidase homologue D [Source:NCBI gene (formerly Entrezgene);Acc:834842] identity=66.8; qcov=0.989; evalue=0; confidence=high
Rice	`Os01g0360200` (RBOHB) - identity=57; qcov=0.983; evalue=0; confidence=high
GO	GO:0004601 (peroxidase activity); GO:0005509 (calcium ion binding); GO:0005886 (plasma membrane); GO:0016174 (NAD(P)H oxidase H2O2-forming activity)
KEGG	smil04016 (MAPK signaling pathway - plant - Salvia miltiorrhiza (redroot sage)); smil04626 (Plant-pathogen interaction - Salvia miltiorrhiza (redroot sage))
Pfam	PF01794 (Ferric_reduct); PF08022 (FAD_binding_8); PF08030 (NAD_binding_6); PF08414 (NADPH_Ox)
InterPro	-
eggNOG	-
NR	GeneID:131008558

打开注释模块

亚细胞定位 Top 5

Rank	定位位置	中文	Score	Protein ID
1	Cell membrane	细胞膜	1.00000	`XP_057791451.1`
2	Nucleus	细胞核	0.00000	`XP_057791451.1`
3	Chromosome	染色体	0.00000	`XP_057791451.1`
4	Centromere	着丝粒	0.00000	`XP_057791451.1`
5	Chromatin	染色质	0.00000	`XP_057791451.1`

进入亚细胞定位查询

EMS 诱变突变

下表显示该基因在丹参 EMS 材料中的前 12 个候选突变；完整结果可进入 EMS 突变库继续筛选或下载。

位置	REF	ALT	类型	影响	携带材料数	材料
`Chr2:68152088`	`G`	`A`	EMS_canonical_SNV	CDS_variant	1	C10
`Chr2:68152134`	`C`	`T`	EMS_canonical_SNV	CDS_variant	1	B104
`Chr2:68152275`	`G`	`A`	EMS_canonical_SNV	CDS_variant	1	B2
`Chr2:68152279`	`A`	`AT`	1bp_insertion	frameshift_variant	125	A14,A18,A19,A20,A21,A24,A25,A4,A5,A6,A8,B107,B11,B111,B114,B115,B118,B119,B122,B123,B124,B128,B13,B130,B135,B136,B137,B138,B14,B15,B17,B19,B2,B21,B25,B27,B30,B32,B33,B34,B35,B36,B37,B38,B39,B41,B44,B45,B48,B5,B51,B56,B6,B60,B66,B68,B69,B70,B71,B72,B75,B76,B77,B80,B84,B85,B86,B87,B89,B90,B91,B92,B95,B96,B99,C11,C13,C18,C19,C2,C20,C21,C26,C27,C28,C30,C32,C33,C34,C36,C37,C39,C40,C41,C43,C45,C47,C49,C52,C54,C57,C59,C61,C62,C63,C67,C68,C69,C72,C73,C75,C76,C78,C79,C8,C81,C82,C83,C85,C87,D2,D5,D6,D8,D9
`Chr2:68152281`	`T`	`TTA`	2bp_insertion	frameshift_variant	15	A15,B103,B104,B127,B16,B54,B63,B64,B67,B83,B95,C14,C24,C5,C73
`Chr2:68152289`	`ACG`	`A`	2bp_deletion	frameshift_variant	9	A15,B103,B127,B54,B67,B95,C14,C24,C73
`Chr2:68152296`	`G`	`A`	EMS_canonical_SNV	CDS_variant	4	A21,B107,B44,D6
`Chr2:68152434`	`G`	`A`	EMS_canonical_SNV	CDS_variant	5	B89,C36,C40,C75,C8
`Chr2:68152440`	`C`	`T`	EMS_canonical_SNV	CDS_variant	1	B13
`Chr2:68152482`	`G`	`A`	EMS_canonical_SNV	CDS_variant	4	B89,C40,C75,C8
`Chr2:68152695`	`G`	`A`	EMS_canonical_SNV	CDS_variant	3	A21,B44,D6
`Chr2:68152698`	`C`	`T`	EMS_canonical_SNV	CDS_variant	3	A21,B44,D6

进入 EMS 突变库

预测功能结构域

结构域结果来自 Pfam-A HMM 数据库和 HMMER hmmscan；位置为对应蛋白序列上的氨基酸坐标。

XP_057791451.1

936 aa

468

936

NADPH_Ox

Ferric_reduct

FAD_binding_8

NAD_binding_6

PF08414 NADPH_Ox 150-251 aa PF01794 Ferric_reduct 419-568 aa PF08022 FAD_binding_8 611-728 aa PF08030 NAD_binding_6 735-900 aa

XP_057791452.1

935 aa

468

935

NADPH_Ox

Ferric_reduct

FAD_binding_8

NAD_binding_6

PF08414 NADPH_Ox 150-251 aa PF01794 Ferric_reduct 419-568 aa PF08022 FAD_binding_8 611-728 aa PF08030 NAD_binding_6 735-917 aa

Protein ID	来源	结构域编号	结构域名称	类型	起始 aa	终止 aa	E-value	Score	说明
`XP_057791451.1`	Pfam	`PF08414`	NADPH_Ox	Family	150	251	1e-38	132.4	Respiratory burst NADPH oxidase
`XP_057791451.1`	Pfam	`PF01794`	Ferric_reduct	Domain	419	568	6e-12	46.4	Ferric reductase like transmembrane component
`XP_057791451.1`	Pfam	`PF08022`	FAD_binding_8	Domain	611	728	1.3e-37	128.9	FAD-binding domain
`XP_057791451.1`	Pfam	`PF08030`	NAD_binding_6	Domain	735	900	6.6e-42	143.9	Ferric reductase NAD binding domain
`XP_057791452.1`	Pfam	`PF08414`	NADPH_Ox	Family	150	251	1.1e-38	132.4	Respiratory burst NADPH oxidase
`XP_057791452.1`	Pfam	`PF01794`	Ferric_reduct	Domain	419	568	6e-12	46.4	Ferric reductase like transmembrane component
`XP_057791452.1`	Pfam	`PF08022`	FAD_binding_8	Domain	611	728	1.3e-37	128.9	FAD-binding domain
`XP_057791452.1`	Pfam	`PF08030`	NAD_binding_6	Domain	735	917	7e-49	166.6	Ferric reductase NAD binding domain

cDNA / CDS / Protein 序列

下载基因组 DNA（仅基因区域）

每个公开基因均提供参考注释对应的转录本序列；蛋白编码基因另提供 CDS 和蛋白序列。非编码 RNA 不适用 CDS 或蛋白下载。真实 accession 的版本后缀予以保留。

cDNA

2 records

下载 cDNA FASTA

XM_057935468.1
TATTTCTCTCATACACACAATTCAAAAGTGGTTAGGAGACTTGGTCTGAAGAAACTTTTCTATGGTTGGAAGAATCCCTCTTTTATTTCAAGTTATATAGCACAATTTTGTAGTACAAGAACTCCAACTAAAACCTTCTCTTTCTTATTCGTTAAACCTTCATTTATTCATTTAATTTCTTCATAACTTAGTACTATAGTTTTAGCATGTACAAATCCCAAATGCAAAATTCGGAGAATAATCAGCACCAACACCACCAC...

XM_057935469.1
ATTTCTCTCATACACACAATTCAAAAGTGGTTAGGAGACTTGGTCTGAAGAAACTTTTCTATGGTTGGAAGAATCCCTCTTTTATTTCAAGTTATATAGCACAATTTTGTAGTACAAGAACTCCAACTAAAACCTTCTCTTTCTTATTCGTTAAACCTTCATTTATTCATTTAATTTCTTCATAACTTAGTACTATAGTTTTAGCATGTACAAATCCCAAATGCAAAATTCGGAGAATAATCAGCACCAACACCACCACC...

CDS

2 records

下载 CDS FASTA

LOC131008558
ATGTACAAATCCCAAATGCAAAATTCGGAGAATAATCAGCACCAACACCACCACCACCACTCCGACACTGAGATTGTCGGGGGCAACGACAGAACCTCGTACAGCGGCCCACTAAGTGGGCCGCTGAGCAAGAGGCCGGCCGGGAGGAAGAGCGCCCGGTTCAACATTCCGGGCGAGACCTCCTCCGGGCCCGTGTCGGCCAACTCCGGCGATGACTACGTGGAGATCACCCTCGACGTGAGGGAGGACTCGGTGGCGGT...

Protein

2 records

下载 Protein FASTA

XP_057791451.1
MYKSQMQNSENNQHQHHHHHSDTEIVGGNDRTSYSGPLSGPLSKRPAGRKSARFNIPGETSSGPVSANSGDDYVEITLDVREDSVAVHSVKAAGGGEVEDPELALLARGLEKRSSFGSSVVRNASSRIRQVSQELKRLASLTRRPQPVGRFDRTKSAAAHALKGLKFISKTDGAAAWAGVEKRFDEITKETNGLLPRARFGECIGMNKESKDFAGELFDALARRRNIGGGSVNKAQLKEFWDQVADQSFDSRLQTFFDMV...

XP_057791452.1
MYKSQMQNSENNQHQHHHHHSDTEIVGGNDRTSYSGPLSGPLSKRPAGRKSARFNIPGETSSGPVSANSGDDYVEITLDVREDSVAVHSVKAAGGGEVEDPELALLARGLEKRSSFGSSVVRNASSRIRQVSQELKRLASLTRRPQPVGRFDRTKSAAAHALKGLKFISKTDGAAAWAGVEKRFDEITKETNGLLPRARFGECIGMNKESKDFAGELFDALARRRNIGGGSVNKAQLKEFWDQVADQSFDSRLQTFFDMV...

上下游序列下载

upstream/downstream 最大各 10000 bp。负链基因会自动反向互补，使最终 FASTA 为转录方向 5′→3′。

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