Gene Card 基因详情

支持统一新 ID、NCBI Gene ID、GeneID、locus_tag、Transcript ID、Protein ID，以及已人工核对的文献基因名查询。页面会先解析到丹参统一基因，再整合坐标、序列、注释、亚细胞定位、EMS 突变和下载入口。

当前解析结果

`SmilChr02G004567`

染色体: Chr02 坐标: 68187854-68194128 链方向: + 类型: protein_coding

基本信息

统一新 Gene ID	`SmilChr02G004567`
名称	SmilChr02G004567
描述	chaperone protein ClpD, chloroplastic
染色体 / SeqID	Chr02 / NC_080388.1
坐标与链方向	68187854 - 68194128 / `+`

ID 对照

NCBI Gene ID	`LOC131008568`
GeneID	`131008568`
locus_tag	`-`
NCBI Name	`LOC131008568`
原始查询	`SmilChr02G004567`

查看完整 ID 对照表

功能注释

来源	GFF basic annotation; NCBI GO GAF; Pfam-A/HMMER; Arabidopsis/Rice homolog
描述	chaperone protein ClpD, chloroplastic
产物	chaperone protein ClpD%2C chloroplastic
Arabidopsis	`AT5G51070` (ERD1) Clp ATPase [Source:NCBI gene (formerly Entrezgene);Acc:835180] identity=68.8; qcov=0.936; evalue=0; confidence=high
Rice	`Os02g0526400` (ClpD1) - identity=67.1; qcov=0.817; evalue=0; confidence=high
GO	GO:0005524 (ATP binding); GO:0005737 (cytoplasm); GO:0016887 (ATP hydrolysis activity); GO:0034605 (cellular response to heat)
KEGG	-
Pfam	PF00004 (AAA); PF02861 (Clp_N); PF07724 (AAA_2); PF07728 (AAA_5); PF10431 (ClpB_D2-small); PF17871 (AAA_lid_9)
InterPro	-
eggNOG	-
NR	GeneID:131008568

打开注释模块

亚细胞定位 Top 5

Rank	定位位置	中文	Score	Protein ID
1	Chloroplast	叶绿体	1.00000	`XP_057791473.1`
2	Chloroplast stroma	叶绿体基质	1.00000	`XP_057791473.1`
3	Nucleus	细胞核	0.00000	`XP_057791473.1`
4	Chromosome	染色体	0.00000	`XP_057791473.1`
5	Centromere	着丝粒	0.00000	`XP_057791473.1`

进入亚细胞定位查询

EMS 诱变突变

下表显示该基因在丹参 EMS 材料中的前 12 个候选突变；完整结果可进入 EMS 突变库继续筛选或下载。

位置	REF	ALT	类型	影响	携带材料数	材料
`Chr2:68188645`	`C`	`T`	EMS_canonical_SNV	CDS_variant	1	B129
`Chr2:68188704`	`C`	`T`	EMS_canonical_SNV	CDS_variant	1	B55
`Chr2:68189993`	`C`	`T`	EMS_canonical_SNV	CDS_variant	1	B55
`Chr2:68190179`	`G`	`A`	EMS_canonical_SNV	CDS_variant	4	B48,B89,C40,C75
`Chr2:68190866`	`C`	`T`	EMS_canonical_SNV	CDS_variant	1	B132
`Chr2:68191402`	`G`	`A`	EMS_canonical_SNV	CDS_variant	1	D11
`Chr2:68191446`	`G`	`A`	EMS_canonical_SNV	CDS_variant	1	B127
`Chr2:68191738`	`C`	`T`	EMS_canonical_SNV	CDS_variant	3	B1,C32,C68
`Chr2:68191865`	`G`	`A`	EMS_canonical_SNV	CDS_variant	2	B93,C2
`Chr2:68191989`	`G`	`A`	EMS_canonical_SNV	CDS_variant	1	C36
`Chr2:68192029`	`G`	`GGA`	2bp_insertion	frameshift_variant	1	B7
`Chr2:68192029`	`G`	`GGA`	2bp_insertion	CDS_variant	1	B7

进入 EMS 突变库

预测功能结构域

结构域结果来自 Pfam-A HMM 数据库和 HMMER hmmscan；位置为对应蛋白序列上的氨基酸坐标。

XP_057791473.1

968 aa

484

968

Clp_N

AAA

AAA_lid_9

AAA_2

AAA

AAA_5

ClpB_D2-small

PF02861 Clp_N 105-237 aa PF02861 Clp_N 191-272 aa PF00004 AAA 338-452 aa PF17871 AAA_lid_9 481-582 aa PF07724 AAA_2 680-855 aa PF00004 AAA 685-803 aa PF07728 AAA_5 685-805 aa PF10431 ClpB_D2-small 861-939 aa

Protein ID	来源	结构域编号	结构域名称	类型	起始 aa	终止 aa	E-value	Score	说明
`XP_057791473.1`	Pfam	`PF02861`	Clp_N	Family	105	237	4.3e-25	89.1	Clp repeat (R) N-terminal domain
`XP_057791473.1`	Pfam	`PF02861`	Clp_N	Family	191	272	4.3e-25	89.1	Clp repeat (R) N-terminal domain
`XP_057791473.1`	Pfam	`PF00004`	AAA	Domain	338	452	1.8e-18	68.0	ATPase family associated with various cellular activities (AAA)
`XP_057791473.1`	Pfam	`PF17871`	AAA_lid_9	Domain	481	582	1.6e-27	96.1	AAA lid domain
`XP_057791473.1`	Pfam	`PF07724`	AAA_2	Domain	680	855	3.2e-65	219.9	AAA domain (Cdc48 subfamily)
`XP_057791473.1`	Pfam	`PF00004`	AAA	Domain	685	803	1.8e-18	68.0	ATPase family associated with various cellular activities (AAA)
`XP_057791473.1`	Pfam	`PF07728`	AAA_5	Domain	685	805	4.8e-15	56.5	AAA domain (dynein-related subfamily)
`XP_057791473.1`	Pfam	`PF10431`	ClpB_D2-small	Domain	861	939	3.3e-21	75.8	C-terminal, D2-small domain, of ClpB protein

cDNA / CDS / Protein 序列

下载基因组 DNA（仅基因区域）

每个公开基因均提供参考注释对应的转录本序列；蛋白编码基因另提供 CDS 和蛋白序列。非编码 RNA 不适用 CDS 或蛋白下载。真实 accession 的版本后缀予以保留。

cDNA

1 records

下载 cDNA FASTA

XM_057935490.1
AGACTCTATTGACCAAGCGAAGGAGAAAGCATCCAATATGAAATAAAATTGGGTTTTGCATTTGCTGCCGTGGGACTCTTAACTTTCCTCCAATACTTTCCTTCTCCCTTTTCTTCTCAAAATTTTTTCTCTTTCTGTATATGCAGATTCTTTTTTCATACGCCATACTTACTATATAAACCTCATATGTCATTTTTCTGCTGATTTCTTCTCAGTCTCCTTCTCCTTGAGCACACGCATTCAATCACTGTAATCTTAAA...

CDS

1 records

下载 CDS FASTA

LOC131008568
ATGGAGGTGTCGTGTTCACCGCCGCTCTCCGTCAATTGCGTGCTGAATTCCGGTCCACTCCGGCGCGTTTCTGCATCCGCCGCTCACCGCCGTGGTCACAAATTAGTAGCGTTTTCCCCAAATTGCTCTCCCTCCTCCTCCTCCTCCTCCTCCTGTGATGCCGCCACTTCCAGTGCTTGCAGCACCAGCAGCAGCTCTTCTTCCTCTTATTTCGGAATCTCGCTTGCTCAAAATTGTGGATTGCATCGGAATAACACAGT...

Protein

1 records

下载 Protein FASTA

XP_057791473.1
MEVSCSPPLSVNCVLNSGPLRRVSASAAHRRGHKLVAFSPNCSPSSSSSSSCDAATSSACSTSSSSSSSYFGISLAQNCGLHRNNTVALKKPRRSFFVVSGIFERFTERSIKAVMFSQREAKAMGKDMVYTQHLLLGLVAEDRASGGFLGSGITIDAARAAVQSLWQEDDQNDGNGESAQQSETSATDVPFSASTKRVFEAAVEYSRTMGYNYIAPEHIAIGLFTVDDGNANRVLKRLGVNVNRLATAAVSRLQGELAKD...

上下游序列下载

upstream/downstream 最大各 10000 bp。负链基因会自动反向互补，使最终 FASTA 为转录方向 5′→3′。

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JBrowse

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