当前解析结果
SmilChr02G004573| 统一新 Gene ID | SmilChr02G004573 |
|---|---|
| 名称 | SmilChr02G004573 |
| 描述 | 4-coumarate--CoA ligase 1-like |
| 染色体 / SeqID | Chr02 / NC_080388.1 |
| 坐标与链方向 | 68234523 - 68238842 / + |
| NCBI Gene ID | LOC131008582 |
|---|---|
| GeneID | 131008582 |
| locus_tag | - |
| NCBI Name | LOC131008582 |
| 原始查询 | SmilChr02G004573 |
| 来源 | GFF basic annotation; NCBI GO GAF; KEGG smil; Pfam-A/HMMER; Arabidopsis/Rice homolog |
|---|---|
| 描述 | 4-coumarate--CoA ligase 1-like |
| 产物 | 4-coumarate--CoA ligase 1-like |
| Arabidopsis | AT3G21240 (4CL2)4-coumarate:CoA ligase 2 [Source:NCBI gene (formerly Entrezgene);Acc:821678] identity=71.5; qcov=0.989; evalue=0; confidence=high |
| Rice | Os02g0177600 (4CL3)- identity=67.4; qcov=0.987; evalue=0; confidence=high |
| GO | GO:0016405 (CoA-ligase activity) |
| KEGG | smil00130 (Ubiquinone and other terpenoid-quinone biosynthesis - Salvia miltiorrhiza (redroot sage)); smil00940 (Phenylpropanoid biosynthesis - Salvia miltiorrhiza (redroot sage)); smil01100 (Metabolic pathways - Salvia miltiorrhiza (redroot sage)); smil01110 (Biosynthesis of secondary metabolites - Salvia miltiorrhiza (redroot sage)) |
| Pfam | PF00501 (AMP-binding); PF13193 (AMP-binding_C) |
| InterPro | - |
| eggNOG | - |
| NR | GeneID:131008582 |
| Rank | 定位位置 | 中文 | Score | Protein ID |
|---|---|---|---|---|
| 1 | Cytosol | 细胞质基质 | 0.80000 | XP_057791496.1 |
| 2 | Peroxisome | 过氧化物酶体 | 0.60000 | XP_057791496.1 |
| 3 | Cytoplasm | 细胞质 | 0.40000 | XP_057791496.1 |
| 4 | Nucleus | 细胞核 | 0.00000 | XP_057791496.1 |
| 5 | Chromosome | 染色体 | 0.00000 | XP_057791496.1 |
下表显示该基因在丹参 EMS 材料中的前 12 个候选突变；完整结果可进入 EMS 突变库继续筛选或下载。
| 位置 | REF | ALT | 类型 | 影响 | 携带材料数 | 材料 |
|---|---|---|---|---|---|---|
Chr2:68235068 |
C |
T |
EMS_canonical_SNV | stop_gained | 26 | A11,A20,A3,B105,B119,B127,B134,B140,B38,B56,B58,B6,B61,B79,B8,B97,C23,C28,C3,C39,C54,C56,C67,C8,C82,D5 |
Chr2:68235093 |
TC |
T |
1bp_deletion | frameshift_variant | 40 | A21,A5,B1,B100,B102,B103,B108,B110,B112,B115,B12,B121,B13,B22,B30,B31,B33,B36,B37,B53,B54,B59,B66,B69,B72,B89,B92,C12,C26,C36,C41,C45,C51,C65,C69,C76,C78,C83,C84,C87 |
Chr2:68235133 |
G |
A |
EMS_canonical_SNV | CDS_variant | 2 | B106,C36 |
Chr2:68235168 |
C |
T |
EMS_canonical_SNV | CDS_variant | 2 | C3,C53 |
Chr2:68235181 |
G |
A |
EMS_canonical_SNV | CDS_variant | 4 | B106,B2,C35,D4 |
Chr2:68235197 |
C |
T |
EMS_canonical_SNV | stop_gained | 8 | A25,B12,B22,C12,C45,C51,C65,C80 |
Chr2:68235199 |
G |
A |
EMS_canonical_SNV | CDS_variant | 2 | B106,C36 |
Chr2:68235202 |
C |
T |
EMS_canonical_SNV | CDS_variant | 3 | B33,C48,C75 |
Chr2:68235235 |
G |
A |
EMS_canonical_SNV | CDS_variant | 3 | B2,C35,D4 |
Chr2:68235273 |
AG |
A |
1bp_deletion | frameshift_variant | 1 | C24 |
Chr2:68235273 |
AG |
A |
1bp_deletion | CDS_variant | 1 | C24 |
Chr2:68235368 |
G |
A |
EMS_canonical_SNV | CDS_variant | 3 | B1,B53,C87 |
结构域结果来自 Pfam-A HMM 数据库和 HMMER hmmscan；位置为对应蛋白序列上的氨基酸坐标。
XP_057791496.1PF00501
AMP-binding 33-400 aa
PF13193
AMP-binding_C 451-526 aa
| Protein ID | 来源 | 结构域编号 | 结构域名称 | 类型 | 起始 aa | 终止 aa | E-value | Score | 说明 |
|---|---|---|---|---|---|---|---|---|---|
XP_057791496.1 |
Pfam | PF00501 |
AMP-binding | Family | 33 | 400 | 5.6e-95 | 319.1 | AMP-binding enzyme |
XP_057791496.1 |
Pfam | PF13193 |
AMP-binding_C | Domain | 451 | 526 | 2.7e-18 | 67.4 | AMP-binding enzyme C-terminal domain |
每个公开基因均提供参考注释对应的转录本序列；蛋白编码基因另提供 CDS 和蛋白序列。非编码 RNA 不适用 CDS 或蛋白下载。真实 accession 的版本后缀予以保留。
1 records
下载 cDNA FASTA1 records
下载 CDS FASTA1 records
下载 Protein FASTAupstream/downstream 最大各 10000 bp。负链基因会自动反向互补，使最终 FASTA 为转录方向 5′→3′。