Gene Card 基因详情

支持统一新 ID、NCBI Gene ID、GeneID、locus_tag、Transcript ID、Protein ID，以及已人工核对的文献基因名查询。页面会先解析到丹参统一基因，再整合坐标、序列、注释、亚细胞定位、EMS 突变和下载入口。

当前解析结果

`SmilChr02G004579`

染色体: Chr02 坐标: 68276587-68287343 链方向: - 类型: protein_coding

基本信息

统一新 Gene ID	`SmilChr02G004579`
名称	SmilChr02G004579
描述	uncharacterized SmilChr02G004579
染色体 / SeqID	Chr02 / NC_080388.1
坐标与链方向	68276587 - 68287343 / `-`

ID 对照

NCBI Gene ID	`LOC131008575`
GeneID	`131008575`
locus_tag	`-`
NCBI Name	`LOC131008575`
原始查询	`SmilChr02G004579`

查看完整 ID 对照表

功能注释

来源	GFF basic annotation; NCBI GO GAF; Pfam-A/HMMER; Arabidopsis/Rice homolog
描述	Protein kinase superfamily protein [Source:NCBI gene (formerly Entrezgene);Acc:844303]; symbol=AT1G79640; hit=AT1G79640; species=arabidopsis; confidence=high
产物	Protein kinase superfamily protein [Source:NCBI gene (formerly Entrezgene);Acc:844303]; symbol=AT1G79640; hit=AT1G79640; species=arabidopsis; confidence=high
Arabidopsis	`AT1G79640` (AT1G79640) Protein kinase superfamily protein [Source:NCBI gene (formerly Entrezgene);Acc:844303] identity=61.8; qcov=1.03; evalue=0; confidence=high
Rice	`Os02g0791700` - identity=57.5; qcov=1.01; evalue=0; confidence=high
GO	GO:0004672 (protein kinase activity); GO:0005524 (ATP binding); GO:0006468 (protein phosphorylation); GO:0043539 (protein serine/threonine kinase activator activity)
KEGG	-
Pfam	PF00069 (Pkinase); PF07714 (PK_Tyr_Ser-Thr)
InterPro	-
eggNOG	-
NR	GeneID:131008575

打开注释模块

亚细胞定位 Top 5

Rank	定位位置	中文	Score	Protein ID
1	Cytoplasm	细胞质	1.00000	`XP_057791486.1`
2	Cytosol	细胞质基质	1.00000	`XP_057791486.1`
3	Cell membrane	细胞膜	0.20000	`XP_057791486.1`
4	Nucleus	细胞核	0.00000	`XP_057791486.1`
5	Chromosome	染色体	0.00000	`XP_057791486.1`

进入亚细胞定位查询

EMS 诱变突变

下表显示该基因在丹参 EMS 材料中的前 12 个候选突变；完整结果可进入 EMS 突变库继续筛选或下载。

位置	REF	ALT	类型	影响	携带材料数	材料
`Chr2:68277021`	`G`	`A`	EMS_canonical_SNV	CDS_variant	1	B13
`Chr2:68277559`	`C`	`T`	EMS_canonical_SNV	CDS_variant	3	A3,B93,C2
`Chr2:68277622`	`C`	`T`	EMS_canonical_SNV	CDS_variant	1	B16
`Chr2:68279401`	`G`	`A`	EMS_canonical_SNV	CDS_variant	1	D6
`Chr2:68281640`	`TGA`	`T`	2bp_deletion	frameshift_variant	1	B128
`Chr2:68281640`	`TGA`	`T`	2bp_deletion	CDS_variant	1	B128
`Chr2:68281658`	`G`	`A`	EMS_canonical_SNV	CDS_variant	5	B20,B55,B73,C44,D8
`Chr2:68284919`	`G`	`A`	EMS_canonical_SNV	CDS_variant	2	A14,B59
`Chr2:68286507`	`C`	`T`	EMS_canonical_SNV	CDS_variant	1	D10

进入 EMS 突变库

预测功能结构域

结构域结果来自 Pfam-A HMM 数据库和 HMMER hmmscan；位置为对应蛋白序列上的氨基酸坐标。

XP_057791486.1

670 aa

335

670

Pkinase

PK_Tyr_Ser-Thr

PF00069 Pkinase 15-276 aa PF07714 PK_Tyr_Ser-Thr 17-272 aa

XP_057791487.1

670 aa

335

670

Pkinase

PK_Tyr_Ser-Thr

PF00069 Pkinase 15-276 aa PF07714 PK_Tyr_Ser-Thr 17-272 aa

XP_057791488.1

666 aa

333

666

Pkinase

PK_Tyr_Ser-Thr

PF00069 Pkinase 15-276 aa PF07714 PK_Tyr_Ser-Thr 17-272 aa

Protein ID	来源	结构域编号	结构域名称	类型	起始 aa	终止 aa	E-value	Score	说明
`XP_057791486.1`	Pfam	`PF00069`	Pkinase	Domain	15	276	2.2e-59	201.7	Protein kinase domain
`XP_057791486.1`	Pfam	`PF07714`	PK_Tyr_Ser-Thr	Domain	17	272	2.7e-45	155.4	Protein tyrosine and serine/threonine kinase
`XP_057791487.1`	Pfam	`PF00069`	Pkinase	Domain	15	276	2.2e-59	201.7	Protein kinase domain
`XP_057791487.1`	Pfam	`PF07714`	PK_Tyr_Ser-Thr	Domain	17	272	2.7e-45	155.4	Protein tyrosine and serine/threonine kinase
`XP_057791488.1`	Pfam	`PF00069`	Pkinase	Domain	15	276	2.2e-59	201.7	Protein kinase domain
`XP_057791488.1`	Pfam	`PF07714`	PK_Tyr_Ser-Thr	Domain	17	272	2.7e-45	155.4	Protein tyrosine and serine/threonine kinase

cDNA / CDS / Protein 序列

下载基因组 DNA（仅基因区域）

每个公开基因均提供参考注释对应的转录本序列；蛋白编码基因另提供 CDS 和蛋白序列。非编码 RNA 不适用 CDS 或蛋白下载。真实 accession 的版本后缀予以保留。

cDNA

3 records

下载 cDNA FASTA

XM_057935504.1
GTAACAGATAAGTGTGACATAAGTCGCTATATTTATCACCATAAACCTCAGCCATTGCCAAAGGGGAAAAAAGGAAAGAAAGAAAAAAGGTTAAAAAATCGCAAGAGAGGAGAGTCGTGCAGAAAGCTGATTGGTAGTATAAACTAAGATAACAGGTGGCGGGATTTTCGTACAAATTATGGCTCCCCTCCAATCTTAGCGGCGATCCGCTTCTACCGCGCGCGCGCTCTCTCTCTCTACTCTCTCTCTCTCTCTCGCAC...

XM_057935505.1
AAAAAGGAAAGAAAGAAAAAAGGTTAAAAAATCGCAAGAGAGGAGAGTCGTGCAGAAAGCTGATTGGTAGTATAAACTAAGATAACAGGTGGCGGGATTTTCGTACAAATTATGGCTCCCCTCCAATCTTAGCGGCGATCCGCTTCTACCGCGCGCGCGCTCTCTCTCTCTACTCTCTCTCTCTCTCTCGCACTAAACAAACAAACCCTCTGTCATCGTCAGAACTTTCTTTTTTTCCTTTTTCCTAAGTTTCGCCCACG...

CDS

3 records

下载 CDS FASTA

LOC131008575
ATGGAGAAGGAGAGGAAAAAGTATCCGATTGGAGCAGAGCATTACACACTGTTTGAGGAGGTGGGGACGGGAGTCAGTGCTTCGGTTCACCGCGCGCTGTGTAATTCGCTCAACGAGGTTGTCGCCATCAAAATTCTCGACTTTGAGCGTACTAATTGTGATCTGAATAACGTTTCACGTGAAGCACAAACAATGGTCCTTGTTGACCATCCCAATGTTTTAAAATCGCATTGCTCCTTTGTCAGCGATCACAATTTGTG...

Protein

3 records

下载 Protein FASTA

XP_057791486.1
MEKERKKYPIGAEHYTLFEEVGTGVSASVHRALCNSLNEVVAIKILDFERTNCDLNNVSREAQTMVLVDHPNVLKSHCSFVSDHNLWVVMPYMAGGSCLHILKAVHPDGFEEVVIATVLREVLKGLDYLHQHGHIHRDVKAGNVLIDSRGGVKLGDFGVSAYLFDAGDRQRMRNTFVGTPCWMAPEVMEQLHGYDFKADIWSFGITALELAHGHAPFSKYPPMKVLLMTLQNAPPGLDYERDKKFSKSFKQMIASCLVKD...

XP_057791487.1
MEKERKKYPIGAEHYTLFEEVGTGVSASVHRALCNSLNEVVAIKILDFERTNCDLNNVSREAQTMVLVDHPNVLKSHCSFVSDHNLWVVMPYMAGGSCLHILKAVHPDGFEEVVIATVLREVLKGLDYLHQHGHIHRDVKAGNVLIDSRGGVKLGDFGVSAYLFDAGDRQRMRNTFVGTPCWMAPEVMEQLHGYDFKADIWSFGITALELAHGHAPFSKYPPMKVLLMTLQNAPPGLDYERDKKFSKSFKQMIASCLVKD...

上下游序列下载

upstream/downstream 最大各 10000 bp。负链基因会自动反向互补，使最终 FASTA 为转录方向 5′→3′。

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