Gene Card 基因详情

支持统一新 ID、NCBI Gene ID、GeneID、locus_tag、Transcript ID、Protein ID,以及已人工核对的文献基因名查询。页面会先解析到丹参统一基因,再整合坐标、序列、注释、亚细胞定位、EMS 突变和下载入口。
示例

当前解析结果

SmilChr02G004581

染色体: Chr02 坐标: 68300347-68304656 链方向: - 类型: protein_coding

基本信息

统一新 Gene IDSmilChr02G004581
名称SmilChr02G004581
描述uncharacterized SmilChr02G004581
染色体 / SeqIDChr02 / NC_080388.1
坐标与链方向68300347 - 68304656 / -

ID 对照

NCBI Gene IDLOC131008591
GeneID131008591
locus_tag-
NCBI NameLOC131008591
原始查询SmilChr02G004581

查看完整 ID 对照表

功能注释

来源GFF basic annotation; NCBI GO GAF; Pfam-A/HMMER; Arabidopsis/Rice homolog
描述Serinc-domain containing serine and sphingolipid biosynthesis protein [Source:NCBI gene (formerly Entrezgene);Acc:838187]; symbol=AT1G16180; hit=AT1G16180; species=arabidopsis; confidence=high
产物Serinc-domain containing serine and sphingolipid biosynthesis protein [Source:NCBI gene (formerly Entrezgene);Acc:838187]; symbol=AT1G16180; hit=AT1G16180; species=arabidopsis; confidence=high
ArabidopsisAT1G16180 (AT1G16180)
Serinc-domain containing serine and sphingolipid biosynthesis protein [Source:NCBI gene (formerly Entrezgene);Acc:838187]
identity=83.7; qcov=0.964; evalue=0; confidence=high
RiceOs02g0792900
-
identity=79; qcov=1; evalue=0; confidence=high
GOGO:0016020 (membrane)
KEGG-
PfamPF03348 (Serinc)
InterPro-
eggNOG-
NRGeneID:131008591

打开注释模块

亚细胞定位 Top 5

Rank定位位置中文ScoreProtein ID
1 Cell membrane 细胞膜 1.00000 XP_057791505.1
2 Vesicle 囊泡 0.40000 XP_057791505.1
3 Cytoplasmic vesicle 细胞质囊泡 0.20000 XP_057791505.1
4 Endosome 内体 0.20000 XP_057791505.1
5 Endosome membrane 内体膜 0.20000 XP_057791505.1

进入亚细胞定位查询

EMS 诱变突变

下表显示该基因在丹参 EMS 材料中的前 12 个候选突变;完整结果可进入 EMS 突变库继续筛选或下载。

位置 REF ALT 类型 影响 携带材料数 材料
Chr2:68300673 C T EMS_canonical_SNV CDS_variant 1 C74
Chr2:68300844 C T EMS_canonical_SNV CDS_variant 3 B121,B57,B69
Chr2:68300852 C T EMS_canonical_SNV CDS_variant 5 B104,B46,B69,B84,D11
Chr2:68301277 C T EMS_canonical_SNV CDS_variant 1 B69
Chr2:68301307 C T EMS_canonical_SNV CDS_variant 5 B71,C57,C61,C62,D5
Chr2:68302367 C T EMS_canonical_SNV CDS_variant 5 B12,B30,C33,C57,C6
Chr2:68302594 C T EMS_canonical_SNV CDS_variant 3 B12,B30,C33
Chr2:68304218 C T EMS_canonical_SNV CDS_variant 1 B65
Chr2:68304230 G A EMS_canonical_SNV CDS_variant 2 B127,C27

进入 EMS 突变库

预测功能结构域

结构域结果来自 Pfam-A HMM 数据库和 HMMER hmmscan;位置为对应蛋白序列上的氨基酸坐标。

XP_057791505.1
414 aa
N
1
207
414
Serinc
C
PF03348 Serinc 8-412 aa
XP_057791506.1
414 aa
N
1
207
414
Serinc
C
PF03348 Serinc 8-412 aa
Protein ID 来源 结构域编号 结构域名称 类型 起始 aa 终止 aa E-value Score 说明
XP_057791505.1 Pfam PF03348 Serinc Domain 8 412 6.7e-124 414.8 Serine incorporator (Serinc)
XP_057791506.1 Pfam PF03348 Serinc Domain 8 412 6.7e-124 414.8 Serine incorporator (Serinc)

cDNA / CDS / Protein 序列

下载基因组 DNA(仅基因区域)

每个公开基因均提供参考注释对应的转录本序列;蛋白编码基因另提供 CDS 和蛋白序列。非编码 RNA 不适用 CDS 或蛋白下载。真实 accession 的版本后缀予以保留。

cDNA

2 records

下载 cDNA FASTA
XM_057935523.1
AAACAAATCCCATTTAGTAGTAACAAAATTAAAACAGAATTAGTTTTTTATTATAAACCTTCGAGATTGAAACTTGAAAATAAAAATAATATTCCTACCTGCAGCGCGCAGGACACGCACTTTGACCATCTCTCACAATGGTTGGAGTTATACGGCAACATCAATTTGATCACTTGATCGGCGTGGTTCCGTTATAGAAAGATGTGGGCAGCTTCGTGCCTGGCATCGTGCTGCGCGGCCTGCGCCTGCGACGCCTGCCG...
XM_057935522.1
ACGCACTTTGACCATCTCTCACAATGTACGTATCTTTTTTCTTCTCCAATATATACTCTTTTGTGCATTTTTTTTATTAGGGCTGTACTTTTATTTATCGTTGCGAACTGATTGAAATTGAGAATTCTAGGGTTGGAGTTATACGGCAACATCAATTTGATCACTTGATCGGCGTGGTTCCGTTATAGAAAGATGTGGGCAGCTTCGTGCCTGGCATCGTGCTGCGCGGCCTGCGCCTGCGACGCCTGCCGCACGGTGGT...

CDS

2 records

下载 CDS FASTA
LOC131008591
ATGTGGGCAGCTTCGTGCCTGGCATCGTGCTGCGCGGCCTGCGCCTGCGACGCCTGCCGCACGGTGGTGTCGGGGATCAGCCGGCGATCCGCCCGTATTGCATACTGCGGTCTTTTTGCTCTTTCTTTGATCGTCTCCTGGATTCTTCGGGAGGTTGCTGCACCCCTCATGGAGAAAATTCCCTGGATCAATCATTTCCAACAAACACCAAACAGGGAGTGGTTTGAAACAGATGCAGTTCTACGAGTGAGCTTGGGCAA...
LOC131008591
ATGTGGGCAGCTTCGTGCCTGGCATCGTGCTGCGCGGCCTGCGCCTGCGACGCCTGCCGCACGGTGGTGTCGGGGATCAGCCGGCGATCCGCCCGTATTGCATACTGCGGTCTTTTTGCTCTTTCTTTGATCGTCTCCTGGATTCTTCGGGAGGTTGCTGCACCCCTCATGGAGAAAATTCCCTGGATCAATCATTTCCAACAAACACCAAACAGGGAGTGGTTTGAAACAGATGCAGTTCTACGAGTGAGCTTGGGCAA...

Protein

2 records

下载 Protein FASTA
XP_057791505.1
MWAASCLASCCAACACDACRTVVSGISRRSARIAYCGLFALSLIVSWILREVAAPLMEKIPWINHFQQTPNREWFETDAVLRVSLGNFLFFTVLAIFMIGVKSQKDPRDSVHHGGWMMKIISWCILVILMFFVPNGIISFYEATSKFGSGLFLLVQVVLLLDFVHGWNENWVGYDEKFWYMALLVISLICYVATFSFSGVLFYLFTPSGHDCGLNTFFIVMTLIFVFVFAIITLHPSVGGSILPASVISLYIMYLCYSGL...
XP_057791506.1
MWAASCLASCCAACACDACRTVVSGISRRSARIAYCGLFALSLIVSWILREVAAPLMEKIPWINHFQQTPNREWFETDAVLRVSLGNFLFFTVLAIFMIGVKSQKDPRDSVHHGGWMMKIISWCILVILMFFVPNGIISFYEATSKFGSGLFLLVQVVLLLDFVHGWNENWVGYDEKFWYMALLVISLICYVATFSFSGVLFYLFTPSGHDCGLNTFFIVMTLIFVFVFAIITLHPSVGGSILPASVISLYIMYLCYSGL...

上下游序列下载

upstream/downstream 最大各 10000 bp。负链基因会自动反向互补,使最终 FASTA 为转录方向 5′→3′。

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