Gene Card 基因详情

支持统一新 ID、NCBI Gene ID、GeneID、locus_tag、Transcript ID、Protein ID，以及已人工核对的文献基因名查询。页面会先解析到丹参统一基因，再整合坐标、序列、注释、亚细胞定位、EMS 突变和下载入口。

当前解析结果

`SmilChr02G004587`

染色体: Chr02 坐标: 68352261-68355449 链方向: + 类型: protein_coding

基本信息

统一新 Gene ID	`SmilChr02G004587`
名称	SmilChr02G004587
描述	calmodulin
染色体 / SeqID	Chr02 / NC_080388.1
坐标与链方向	68352261 - 68355449 / `+`

ID 对照

NCBI Gene ID	`LOC131008613`
GeneID	`131008613`
locus_tag	`-`
NCBI Name	`LOC131008613`
原始查询	`SmilChr02G004587`

查看完整 ID 对照表

功能注释

来源	GFF basic annotation; NCBI GO GAF; KEGG smil; Pfam-A/HMMER; Arabidopsis/Rice homolog
描述	calmodulin
产物	calmodulin
Arabidopsis	`AT1G66410` (CAM4) calmodulin 4 [Source:NCBI gene (formerly Entrezgene);Acc:842959] identity=75.2; qcov=1.22; evalue=9.02e-75; confidence=high
Rice	`Os01g0279300` (OsCaM3) - identity=75.2; qcov=1.22; evalue=7.09e-75; confidence=high
GO	GO:0005509 (calcium ion binding); GO:0030234 (enzyme regulator activity)
KEGG	smil04016 (MAPK signaling pathway - plant - Salvia miltiorrhiza (redroot sage)); smil04070 (Phosphatidylinositol signaling system - Salvia miltiorrhiza (redroot sage)); smil04075 (Plant hormone signal transduction - Salvia miltiorrhiza (redroot sage)); smil04626 (Plant-pathogen interaction - Salvia miltiorrhiza (redroot sage))
Pfam	PF00036 (EF-hand_1); PF13202 (EF-hand_5); PF13405 (EF-hand_6); PF13499 (EF-hand_7); PF13833 (EF-hand_8); PF14658 (EF-hand_9)
InterPro	-
eggNOG	-
NR	GeneID:131008613

打开注释模块

亚细胞定位 Top 5

Rank	定位位置	中文	Score	Protein ID
1	Cytoplasm	细胞质	1.00000	`XP_057791534.1`
2	Cytosol	细胞质基质	0.60000	`XP_057791533.1`
3	Cytoskeleton	细胞骨架	0.20000	`XP_057791533.1`
4	Nucleus	细胞核	0.20000	`XP_057791534.1`
5	Phragmoplast	Phragmoplast	0.20000	`XP_057791533.1`

进入亚细胞定位查询

EMS 诱变突变

下表显示该基因在丹参 EMS 材料中的前 12 个候选突变；完整结果可进入 EMS 突变库继续筛选或下载。

位置	REF	ALT	类型	影响	携带材料数	材料
`Chr2:68353899`	`G`	`A`	EMS_canonical_SNV	CDS_variant	1	C14
`Chr2:68355229`	`C`	`T`	EMS_canonical_SNV	CDS_variant	5	B1,B10,B104,B32,C73
`Chr2:68355277`	`G`	`A`	EMS_canonical_SNV	CDS_variant	4	B122,B41,B55,B93

进入 EMS 突变库

预测功能结构域

结构域结果来自 Pfam-A HMM 数据库和 HMMER hmmscan；位置为对应蛋白序列上的氨基酸坐标。

XP_057791533.1

149 aa

149

EF-hand_1

EF-hand_6

EF-hand_7

EF-hand_5

EF-hand_8

EF-hand_1

EF-hand_5

EF-hand_8

EF-hand_7

EF-hand_1

EF-hand_6

EF-hand_5

EF-hand_8

EF-hand_1

EF-hand_5

PF00036 EF-hand_1 12-40 aa PF13405 EF-hand_6 12-41 aa PF13499 EF-hand_7 12-73 aa PF13202 EF-hand_5 14-37 aa PF13833 EF-hand_8 25-75 aa PF00036 EF-hand_1 48-75 aa PF13202 EF-hand_5 49-73 aa PF13833 EF-hand_8 82-110 aa PF13499 EF-hand_7 83-146 aa PF00036 EF-hand_1 85-112 aa PF13405 EF-hand_6 85-114 aa PF13202 EF-hand_5 86-110 aa PF13833 EF-hand_8 101-146 aa PF00036 EF-hand_1 121-146 aa PF13202 EF-hand_5 124-146 aa

XP_057791534.1

122 aa

122

EF-hand_1

EF-hand_6

EF-hand_7

EF-hand_5

EF-hand_9

EF-hand_8

EF-hand_1

EF-hand_5

EF-hand_7

EF-hand_8

EF-hand_1

EF-hand_5

PF00036 EF-hand_1 12-40 aa PF13405 EF-hand_6 12-41 aa PF13499 EF-hand_7 12-73 aa PF13202 EF-hand_5 14-37 aa PF14658 EF-hand_9 15-75 aa PF13833 EF-hand_8 25-75 aa PF00036 EF-hand_1 48-75 aa PF13202 EF-hand_5 49-73 aa PF13499 EF-hand_7 79-119 aa PF13833 EF-hand_8 79-119 aa PF00036 EF-hand_1 94-119 aa PF13202 EF-hand_5 97-119 aa

Protein ID	来源	结构域编号	结构域名称	类型	起始 aa	终止 aa	E-value	Score	说明
`XP_057791533.1`	Pfam	`PF00036`	EF-hand_1	Domain	12	40	1.4e-40	134.6	EF hand domain
`XP_057791533.1`	Pfam	`PF13405`	EF-hand_6	Domain	12	41	8e-32	106.6	EF-hand domain
`XP_057791533.1`	Pfam	`PF13499`	EF-hand_7	Domain	12	73	1e-40	138.6	EF-hand domain pair
`XP_057791533.1`	Pfam	`PF13202`	EF-hand_5	Domain	14	37	3.4e-26	90.2	EF hand
`XP_057791533.1`	Pfam	`PF13833`	EF-hand_8	Domain	25	75	4.8e-26	91.0	EF-hand domain pair
`XP_057791533.1`	Pfam	`PF00036`	EF-hand_1	Domain	48	75	1.4e-40	134.6	EF hand domain
`XP_057791533.1`	Pfam	`PF13202`	EF-hand_5	Domain	49	73	3.4e-26	90.2	EF hand
`XP_057791533.1`	Pfam	`PF13833`	EF-hand_8	Domain	82	110	4.8e-26	91.0	EF-hand domain pair
`XP_057791533.1`	Pfam	`PF13499`	EF-hand_7	Domain	83	146	1e-40	138.6	EF-hand domain pair
`XP_057791533.1`	Pfam	`PF00036`	EF-hand_1	Domain	85	112	1.4e-40	134.6	EF hand domain
`XP_057791533.1`	Pfam	`PF13405`	EF-hand_6	Domain	85	114	8e-32	106.6	EF-hand domain
`XP_057791533.1`	Pfam	`PF13202`	EF-hand_5	Domain	86	110	3.4e-26	90.2	EF hand
`XP_057791533.1`	Pfam	`PF13833`	EF-hand_8	Domain	101	146	4.8e-26	91.0	EF-hand domain pair
`XP_057791533.1`	Pfam	`PF00036`	EF-hand_1	Domain	121	146	1.4e-40	134.6	EF hand domain
`XP_057791533.1`	Pfam	`PF13202`	EF-hand_5	Domain	124	146	3.4e-26	90.2	EF hand
`XP_057791534.1`	Pfam	`PF00036`	EF-hand_1	Domain	12	40	4.7e-30	101.6	EF hand domain
`XP_057791534.1`	Pfam	`PF13405`	EF-hand_6	Domain	12	41	7.8e-21	72.5	EF-hand domain
`XP_057791534.1`	Pfam	`PF13499`	EF-hand_7	Domain	12	73	7.8e-31	106.9	EF-hand domain pair
`XP_057791534.1`	Pfam	`PF13202`	EF-hand_5	Domain	14	37	5.1e-18	64.3	EF hand
`XP_057791534.1`	Pfam	`PF14658`	EF-hand_9	Domain	15	75	8.8e-14	52.4	EF-hand domain
`XP_057791534.1`	Pfam	`PF13833`	EF-hand_8	Domain	25	75	1.3e-23	83.2	EF-hand domain pair
`XP_057791534.1`	Pfam	`PF00036`	EF-hand_1	Domain	48	75	4.7e-30	101.6	EF hand domain
`XP_057791534.1`	Pfam	`PF13202`	EF-hand_5	Domain	49	73	5.1e-18	64.3	EF hand
`XP_057791534.1`	Pfam	`PF13499`	EF-hand_7	Domain	79	119	7.8e-31	106.9	EF-hand domain pair
`XP_057791534.1`	Pfam	`PF13833`	EF-hand_8	Domain	79	119	1.3e-23	83.2	EF-hand domain pair
`XP_057791534.1`	Pfam	`PF00036`	EF-hand_1	Domain	94	119	4.7e-30	101.6	EF hand domain
`XP_057791534.1`	Pfam	`PF13202`	EF-hand_5	Domain	97	119	5.1e-18	64.3	EF hand

cDNA / CDS / Protein 序列

下载基因组 DNA（仅基因区域）

每个公开基因均提供参考注释对应的转录本序列；蛋白编码基因另提供 CDS 和蛋白序列。非编码 RNA 不适用 CDS 或蛋白下载。真实 accession 的版本后缀予以保留。

cDNA

2 records

下载 cDNA FASTA

XM_057935550.1
GCACGGCCTTAACGTTTTTCTTTCGTTTCTTATTTTTTTTTCTCAAACACGGAATGGGCCTAGAAGATAAATCTTGTGGGCCTAATATGTTTTTTTAGGAATGTGGGCCTAATGGAGTATGTTACACACACAGTCTCCAATTTTGACATTCACTAGAAGCATGCAAAAAAAAAAAAAAGTAATGATAATTTGATGATTTTATTTTTTAATTTTTCATGGGTTATGCATCAGTTACTGGCCTTAAATTGTTGCTTGAATAA...

XM_057935551.1
GGCCTTAACGTTTTTCTTTCGTTTCTTATTTTTTTTTCTCAAACACGGAATGGGCCTAGAAGATAAATCTTGTGGGCCTAATATGTTTTTTTAGGAATGTGGGCCTAATGGAGTATGTTACACACACAGTCTCCAATTTTGACATTCACTAGAAGCATGCAAAAAAAAAAAAAAGTAATGATAATTTGATGATTTTATTTTTTAATTTTTCATGGGTTATGCATCAGTTACTGGCCTTAAATTGTTGCTTGAATAATTTT...

CDS

2 records

下载 CDS FASTA

LOC131008613
ATGGCTCAGCAGCTCACAGAGGAGCAGATCGCCGAGTTCAAGGAAGCCTTCAGCCTCTTCGATAAGGATGGCGATGGTTGTATCACAACTAAGGAATTGGGTACTGTAATGAGATCACTTGGACAGAATCCTACTGAAGCTGAACTTCAAGATATGATCAATGAAGTTGATGCTGACCAGAATGGAACCATTGACTTCCCTGAATTCTTGAATTTGATGGCTCGGAAGATGAAGGATACTGATTCAGAAGAGGAACTCAA...

Protein

2 records

下载 Protein FASTA

XP_057791533.1
MAQQLTEEQIAEFKEAFSLFDKDGDGCITTKELGTVMRSLGQNPTEAELQDMINEVDADQNGTIDFPEFLNLMARKMKDTDSEEELKEAFKVFDKDQNGFISASELRHVMTNLGEKLTDEEVEEMIKEADVDGDGQVNYEEFVRMMLAK

XP_057791534.1
MAQQLTEEQIAEFKEAFSLFDKDGDGCITTKELGTVMRSLGQNPTEAELQDMINEVDADQNGTIDFPEFLNLMARKMKLRHVMTNLGEKLTDEEVEEMIKEADVDGDGQVNYEEFVRMMLAK

上下游序列下载

upstream/downstream 最大各 10000 bp。负链基因会自动反向互补，使最终 FASTA 为转录方向 5′→3′。

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