Gene Card 基因详情

支持统一新 ID、NCBI Gene ID、GeneID、locus_tag、Transcript ID、Protein ID，以及已人工核对的文献基因名查询。页面会先解析到丹参统一基因，再整合坐标、序列、注释、亚细胞定位、EMS 突变和下载入口。

当前解析结果

`SmilChr02G004589`

染色体: Chr02 坐标: 68377213-68379828 链方向: - 类型: protein_coding

基本信息

统一新 Gene ID	`SmilChr02G004589`
名称	SmilChr02G004589
描述	zinc finger protein SHOOT GRAVITROPISM 5-like
染色体 / SeqID	Chr02 / NC_080388.1
坐标与链方向	68377213 - 68379828 / `-`

ID 对照

NCBI Gene ID	`LOC131008592`
GeneID	`131008592`
locus_tag	`-`
NCBI Name	`LOC131008592`
原始查询	`SmilChr02G004589`

查看完整 ID 对照表

功能注释

来源	GFF basic annotation; NCBI GO GAF; Pfam-A/HMMER; Arabidopsis/Rice homolog
描述	zinc finger protein SHOOT GRAVITROPISM 5-like
产物	zinc finger protein SHOOT GRAVITROPISM 5-like
Arabidopsis	`AT2G01940` (SGR5) C2H2-like zinc finger protein [Source:NCBI gene (formerly Entrezgene);Acc:814725] identity=55.6; qcov=0.99; evalue=3.54e-138; confidence=high
Rice	`Os09g0449400` (OsIDD13) - identity=53.8; qcov=1.1; evalue=1.01e-139; confidence=high
GO	GO:0003700 (DNA-binding transcription factor activity); GO:0005634 (nucleus)
KEGG	-
Pfam	PF00096 (zf-C2H2); PF22995 (C2CH-3rd_BIRD-IDD); PF22996 (C2H2-2nd_BIRD-IDD)
InterPro	-
eggNOG	-
NR	GeneID:131008592

打开注释模块

亚细胞定位 Top 5

Rank	定位位置	中文	Score	Protein ID
1	Nucleus	细胞核	1.00000	`XP_057791507.1`
2	Nucleoplasm	核质	0.20000	`XP_057791507.1`
3	Chromosome	染色体	0.00000	`XP_057791507.1`
4	Centromere	着丝粒	0.00000	`XP_057791507.1`
5	Chromatin	染色质	0.00000	`XP_057791507.1`

进入亚细胞定位查询

EMS 诱变突变

下表显示该基因在丹参 EMS 材料中的前 12 个候选突变；完整结果可进入 EMS 突变库继续筛选或下载。

位置	REF	ALT	类型	影响	携带材料数	材料
`Chr2:68377471`	`AT`	`A`	1bp_deletion	frameshift_variant	1	B61
`Chr2:68377471`	`AT`	`A`	1bp_deletion	CDS_variant	1	B61
`Chr2:68377571`	`C`	`T`	EMS_canonical_SNV	CDS_variant	2	B121,B57
`Chr2:68377622`	`C`	`T`	EMS_canonical_SNV	CDS_variant	1	B41
`Chr2:68377688`	`C`	`T`	EMS_canonical_SNV	CDS_variant	1	B65
`Chr2:68377802`	`C`	`T`	EMS_canonical_SNV	CDS_variant	1	B94
`Chr2:68377829`	`G`	`A`	EMS_canonical_SNV	CDS_variant	1	B13
`Chr2:68377845`	`G`	`A`	EMS_canonical_SNV	CDS_variant	1	D10
`Chr2:68378048`	`C`	`T`	EMS_canonical_SNV	CDS_variant	1	C53
`Chr2:68378075`	`G`	`A`	EMS_canonical_SNV	CDS_variant	2	C58,C81
`Chr2:68379036`	`G`	`A`	EMS_canonical_SNV	CDS_variant	2	B106,C29
`Chr2:68379171`	`C`	`T`	EMS_canonical_SNV	CDS_variant	1	B13

进入 EMS 突变库

预测功能结构域

结构域结果来自 Pfam-A HMM 数据库和 HMMER hmmscan；位置为对应蛋白序列上的氨基酸坐标。

XP_057791507.1

404 aa

202

404

zf-C2H2

C2H2-2nd_BIRD-IDD

C2CH-3rd_BIRD-IDD

PF00096 zf-C2H2 45-67 aa PF22996 C2H2-2nd_BIRD-IDD 82-116 aa PF22995 C2CH-3rd_BIRD-IDD 121-145 aa

XP_057791508.1

400 aa

200

400

zf-C2H2

C2H2-2nd_BIRD-IDD

C2CH-3rd_BIRD-IDD

PF00096 zf-C2H2 41-63 aa PF22996 C2H2-2nd_BIRD-IDD 78-112 aa PF22995 C2CH-3rd_BIRD-IDD 117-141 aa

Protein ID	来源	结构域编号	结构域名称	类型	起始 aa	终止 aa	E-value	Score	说明
`XP_057791507.1`	Pfam	`PF00096`	zf-C2H2	Domain	45	67	1.6e-06	29.0	Zinc finger, C2H2 type
`XP_057791507.1`	Pfam	`PF22996`	C2H2-2nd_BIRD-IDD	Family	82	116	6.4e-19	68.4	BIRD-IDD transcription factor, second C2H2 zinc finger
`XP_057791507.1`	Pfam	`PF22995`	C2CH-3rd_BIRD-IDD	Domain	121	145	4e-14	52.7	BIRD-IDD transcription factor, third C2HC zinc finger
`XP_057791508.1`	Pfam	`PF00096`	zf-C2H2	Domain	41	63	1.5e-06	29.0	Zinc finger, C2H2 type
`XP_057791508.1`	Pfam	`PF22996`	C2H2-2nd_BIRD-IDD	Family	78	112	6.3e-19	68.4	BIRD-IDD transcription factor, second C2H2 zinc finger
`XP_057791508.1`	Pfam	`PF22995`	C2CH-3rd_BIRD-IDD	Domain	117	141	3.9e-14	52.7	BIRD-IDD transcription factor, third C2HC zinc finger

cDNA / CDS / Protein 序列

下载基因组 DNA（仅基因区域）

每个公开基因均提供参考注释对应的转录本序列；蛋白编码基因另提供 CDS 和蛋白序列。非编码 RNA 不适用 CDS 或蛋白下载。真实 accession 的版本后缀予以保留。

cDNA

2 records

下载 cDNA FASTA

XM_057935525.1
AAAAATATACAAGTAAATAAAAATGAGTGTGTCCATGAAATCATAATGAGTGTGGTTTTGTTGGTTTGTGGGGATTGTTTTTCTTCGGTCCATTTGCTTCTTCTTGCTTTCAACTTGGAACCGTATACTATACGTACTGTCTCAACAAGCCCTTCTCTCTCAAATTTATTAATTCAATTCCTCAGGTGATTAGCTTTTAAGAAAGAAGGAAAGAGCTTATATATTTTATCCTCTTGGATGAAAAGGAGGAAAGCTTAAAG...

XM_057935524.1
AAAAATATACAAGTAAATAAAAATGAGTGTGTCCATGAAATCATAATGAGTGTGGTTTTGTTGGTTTGTGGGGATTGTTTTTCTTCGGTCCATTTGCTTCTTCTTGCTTTCAACTTGGAACCGTATACTATACGTACTGTCTCAACAAGCCCTTCTCTCTCAAATTTATTAATTCAATTCCTCAGGTGATTAGCTTTTAAGAAAGAAGGAAAGAGCTTATATATTTTATCCTCTTGGATGAAAAGGAGGAAAGCTTAAAG...

CDS

2 records

下载 CDS FASTA

LOC131008592
ATGTTGAGCAACAATTCGGAGCTCCTCTCCTCCTCGGAAACCAACAGAAGAAAACGACGCCCCGCCGGAACTCCAGAAGTGGTGTCTCTCTCCCCGAAAACCCTGCTGGAATCGGATCGGTACGTGTGCGAGATCTGCAACCAGGGGTTCCAGCGCGACCAGAATCTGCAGATGCACCGGCGGCGGCACAAGGTGCCGTGGAAGCTGCTGAAGAGGGAGACGCCGATCGCGAGGAAGCGCGTGTTCGTGTGCCCGGAGCC...

LOC131008592
ATGTTGAGCAACAATTCGGAGCTCCTCTCCTCCTCGGAAACCAACAGAAGAAAACGACGCCCCGCCGGAACTCCAGATCCGGATGCAGAAGTGGTGTCTCTCTCCCCGAAAACCCTGCTGGAATCGGATCGGTACGTGTGCGAGATCTGCAACCAGGGGTTCCAGCGCGACCAGAATCTGCAGATGCACCGGCGGCGGCACAAGGTGCCGTGGAAGCTGCTGAAGAGGGAGACGCCGATCGCGAGGAAGCGCGTGTTCGT...

Protein

2 records

下载 Protein FASTA

XP_057791507.1
MLSNNSELLSSSETNRRKRRPAGTPDPDAEVVSLSPKTLLESDRYVCEICNQGFQRDQNLQMHRRRHKVPWKLLKRETPIARKRVFVCPEPSCLHHDPCHALGDLVGIKKHFRRKHSNQKQWVCDKCSKGYAVQSDYKAHLKTCGTRGHSCDCGRVFSRVESFIEHQDACSMGRLRSECQPLQTAACLSRTASSPSPSSDTNLSVAPWAAPFPAPMDSIFMADAATPKNRSRPPNLELQLLTKATTSLDNSAKLDSTQLQ...

XP_057791508.1
MLSNNSELLSSSETNRRKRRPAGTPEVVSLSPKTLLESDRYVCEICNQGFQRDQNLQMHRRRHKVPWKLLKRETPIARKRVFVCPEPSCLHHDPCHALGDLVGIKKHFRRKHSNQKQWVCDKCSKGYAVQSDYKAHLKTCGTRGHSCDCGRVFSRVESFIEHQDACSMGRLRSECQPLQTAACLSRTASSPSPSSDTNLSVAPWAAPFPAPMDSIFMADAATPKNRSRPPNLELQLLTKATTSLDNSAKLDSTQLQLSIG...

上下游序列下载

upstream/downstream 最大各 10000 bp。负链基因会自动反向互补，使最终 FASTA 为转录方向 5′→3′。

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