当前解析结果
SmilChr02G004595| 统一新 Gene ID | SmilChr02G004595 |
|---|---|
| 名称 | SmilChr02G004595 |
| 描述 | dual specificity protein phosphatase PHS1 |
| 染色体 / SeqID | Chr02 / NC_080388.1 |
| 坐标与链方向 | 68466908 - 68473833 / + |
| NCBI Gene ID | LOC131008569 |
|---|---|
| GeneID | 131008569 |
| locus_tag | - |
| NCBI Name | LOC131008569 |
| 原始查询 | SmilChr02G004595 |
| 来源 | GFF basic annotation; NCBI GO GAF; Pfam-A/HMMER; Arabidopsis/Rice homolog |
|---|---|
| 描述 | dual specificity protein phosphatase PHS1 |
| 产物 | dual specificity protein phosphatase PHS1 |
| Arabidopsis | AT5G23720 (PHS1)dual specificity protein phosphatase family protein [Source:NCBI gene (formerly Entrezgene);Acc:832437] identity=63.8; qcov=0.987; evalue=0; confidence=high |
| Rice | Os01g0311500 (OsPHS1a)- identity=56.4; qcov=0.966; evalue=0; confidence=high |
| GO | GO:0006470 (protein dephosphorylation); GO:0008138 (protein tyrosine/serine/threonine phosphatase activity); GO:0009737 (response to abscisic acid); GO:0043622 (cortical microtubule organization) |
| KEGG | - |
| Pfam | PF00782 (DSPc); PF09192 (Act-Frag_cataly) |
| InterPro | - |
| eggNOG | - |
| NR | GeneID:131008569 |
| Rank | 定位位置 | 中文 | Score | Protein ID |
|---|---|---|---|---|
| 1 | Cytoplasm | 细胞质 | 1.00000 | XP_057791474.1 |
| 2 | Cytosol | 细胞质基质 | 0.80000 | XP_057791474.1 |
| 3 | Nucleus | 细胞核 | 0.00000 | XP_057791474.1 |
| 4 | Chromosome | 染色体 | 0.00000 | XP_057791474.1 |
| 5 | Centromere | 着丝粒 | 0.00000 | XP_057791474.1 |
下表显示该基因在丹参 EMS 材料中的前 12 个候选突变；完整结果可进入 EMS 突变库继续筛选或下载。
| 位置 | REF | ALT | 类型 | 影响 | 携带材料数 | 材料 |
|---|---|---|---|---|---|---|
Chr2:68467103 |
G |
A |
EMS_canonical_SNV | CDS_variant | 1 | B97 |
Chr2:68467394 |
C |
T |
EMS_canonical_SNV | CDS_variant | 5 | B40,C17,C4,C75,D1 |
Chr2:68467407 |
G |
GAT |
2bp_insertion | frameshift_variant | 41 | A16,A23,A3,B10,B105,B106,B111,B114,B118,B130,B134,B137,B138,B16,B37,B58,B6,B65,B67,B70,B8,B82,B87,C11,C13,C22,C29,C30,C31,C41,C47,C50,C51,C52,C64,C66,C67,C69,C84,D2,D3 |
Chr2:68469162 |
C |
T |
EMS_canonical_SNV | CDS_variant | 3 | B36,B61,C27 |
Chr2:68469824 |
C |
T |
EMS_canonical_SNV | CDS_variant | 5 | A21,B65,C39,C81,D4 |
Chr2:68469825 |
G |
A |
EMS_canonical_SNV | CDS_variant | 3 | B139,B83,C59 |
Chr2:68470984 |
G |
A |
EMS_canonical_SNV | CDS_variant | 2 | B107,B97 |
Chr2:68471007 |
G |
A |
EMS_canonical_SNV | CDS_variant | 1 | C87 |
Chr2:68471023 |
G |
A |
EMS_canonical_SNV | CDS_variant | 5 | B104,B108,B94,C23,C58 |
Chr2:68471086 |
G |
A |
EMS_canonical_SNV | CDS_variant | 2 | B107,B97 |
Chr2:68471238 |
C |
T |
EMS_canonical_SNV | CDS_variant | 2 | B42,B43 |
Chr2:68471413 |
C |
T |
EMS_canonical_SNV | CDS_variant | 4 | B109,B28,C61,C85 |
结构域结果来自 Pfam-A HMM 数据库和 HMMER hmmscan；位置为对应蛋白序列上的氨基酸坐标。
XP_057791474.1PF09192
Act-Frag_cataly 110-441 aa
PF00782
DSPc 728-856 aa
XP_057791475.1PF09192
Act-Frag_cataly 107-438 aa
PF00782
DSPc 725-853 aa
XP_057791476.1PF09192
Act-Frag_cataly 110-424 aa
PF00782
DSPc 711-839 aa
XP_057791477.1PF09192
Act-Frag_cataly 107-421 aa
PF00782
DSPc 708-836 aa
XP_057791478.1PF09192
Act-Frag_cataly 110-441 aa
PF00782
DSPc 728-825 aa
XP_057791479.1PF09192
Act-Frag_cataly 107-421 aa
PF00782
DSPc 708-805 aa
| Protein ID | 来源 | 结构域编号 | 结构域名称 | 类型 | 起始 aa | 终止 aa | E-value | Score | 说明 |
|---|---|---|---|---|---|---|---|---|---|
XP_057791474.1 |
Pfam | PF09192 |
Act-Frag_cataly | Domain | 110 | 441 | 9.5e-43 | 147.3 | Actin-fragmin kinase, catalytic |
XP_057791474.1 |
Pfam | PF00782 |
DSPc | Domain | 728 | 856 | 2.6e-24 | 86.3 | Dual specificity phosphatase, catalytic domain |
XP_057791475.1 |
Pfam | PF09192 |
Act-Frag_cataly | Domain | 107 | 438 | 9.5e-43 | 147.3 | Actin-fragmin kinase, catalytic |
XP_057791475.1 |
Pfam | PF00782 |
DSPc | Domain | 725 | 853 | 2.5e-24 | 86.3 | Dual specificity phosphatase, catalytic domain |
XP_057791476.1 |
Pfam | PF09192 |
Act-Frag_cataly | Domain | 110 | 424 | 7.9e-49 | 167.3 | Actin-fragmin kinase, catalytic |
XP_057791476.1 |
Pfam | PF00782 |
DSPc | Domain | 711 | 839 | 2.4e-24 | 86.3 | Dual specificity phosphatase, catalytic domain |
XP_057791477.1 |
Pfam | PF09192 |
Act-Frag_cataly | Domain | 107 | 421 | 7.8e-49 | 167.3 | Actin-fragmin kinase, catalytic |
XP_057791477.1 |
Pfam | PF00782 |
DSPc | Domain | 708 | 836 | 2.4e-24 | 86.3 | Dual specificity phosphatase, catalytic domain |
XP_057791478.1 |
Pfam | PF09192 |
Act-Frag_cataly | Domain | 110 | 441 | 7e-43 | 147.8 | Actin-fragmin kinase, catalytic |
XP_057791478.1 |
Pfam | PF00782 |
DSPc | Domain | 728 | 825 | 5.8e-18 | 65.7 | Dual specificity phosphatase, catalytic domain |
XP_057791479.1 |
Pfam | PF09192 |
Act-Frag_cataly | Domain | 107 | 421 | 6.1e-49 | 167.7 | Actin-fragmin kinase, catalytic |
XP_057791479.1 |
Pfam | PF00782 |
DSPc | Domain | 708 | 805 | 5.5e-18 | 65.8 | Dual specificity phosphatase, catalytic domain |
每个公开基因均提供参考注释对应的转录本序列；蛋白编码基因另提供 CDS 和蛋白序列。非编码 RNA 不适用 CDS 或蛋白下载。真实 accession 的版本后缀予以保留。
6 records
下载 cDNA FASTA6 records
下载 CDS FASTA6 records
下载 Protein FASTAupstream/downstream 最大各 10000 bp。负链基因会自动反向互补，使最终 FASTA 为转录方向 5′→3′。