Gene Card 基因详情

支持统一新 ID、NCBI Gene ID、GeneID、locus_tag、Transcript ID、Protein ID，以及已人工核对的文献基因名查询。页面会先解析到丹参统一基因，再整合坐标、序列、注释、亚细胞定位、EMS 突变和下载入口。

当前解析结果

`SmilChr02G004602`

染色体: Chr02 坐标: 68537309-68538321 链方向: - 类型: protein_coding

基本信息

统一新 Gene ID	`SmilChr02G004602`
名称	SmilChr02G004602
描述	calcium-binding allergen Ole e 8-like
染色体 / SeqID	Chr02 / NC_080388.1
坐标与链方向	68537309 - 68538321 / `-`

ID 对照

NCBI Gene ID	`LOC131008610`
GeneID	`131008610`
locus_tag	`-`
NCBI Name	`LOC131008610`
原始查询	`SmilChr02G004602`

查看完整 ID 对照表

功能注释

来源	GFF basic annotation; NCBI GO GAF; KEGG smil; Pfam-A/HMMER; Arabidopsis/Rice homolog
描述	calcium-binding allergen Ole e 8-like
产物	calcium-binding allergen Ole e 8-like
Arabidopsis	`AT1G18210` (AT1G18210) Calcium-binding EF-hand family protein [Source:NCBI gene (formerly Entrezgene);Acc:838401] identity=52.2; qcov=0.97; evalue=1.59e-52; confidence=high
Rice	`Os05g0223000` (OsCML18) - identity=55.6; qcov=0.878; evalue=2.1e-48; confidence=medium
GO	GO:0005509 (calcium ion binding)
KEGG	smil04626 (Plant-pathogen interaction - Salvia miltiorrhiza (redroot sage))
Pfam	PF00036 (EF-hand_1); PF13202 (EF-hand_5); PF13405 (EF-hand_6); PF13499 (EF-hand_7); PF13833 (EF-hand_8)
InterPro	-
eggNOG	-
NR	GeneID:131008610

打开注释模块

亚细胞定位 Top 5

Rank	定位位置	中文	Score	Protein ID
1	Cytosol	细胞质基质	1.00000	`XP_057791531.1`
2	Cytoplasm	细胞质	0.60000	`XP_057791531.1`
3	Nucleus	细胞核	0.00000	`XP_057791531.1`
4	Chromosome	染色体	0.00000	`XP_057791531.1`
5	Centromere	着丝粒	0.00000	`XP_057791531.1`

进入亚细胞定位查询

EMS 诱变突变

下表显示该基因在丹参 EMS 材料中的前 12 个候选突变；完整结果可进入 EMS 突变库继续筛选或下载。

位置	REF	ALT	类型	影响	携带材料数	材料
`Chr2:68537617`	`G`	`A`	EMS_canonical_SNV	CDS_variant	2	B36,C86
`Chr2:68537898`	`C`	`T`	EMS_canonical_SNV	CDS_variant	2	A24,B1
`Chr2:68537910`	`C`	`T`	EMS_canonical_SNV	CDS_variant	1	A24
`Chr2:68537924`	`G`	`A`	EMS_canonical_SNV	CDS_variant	2	C49,D11
`Chr2:68537950`	`G`	`A`	EMS_canonical_SNV	CDS_variant	2	B78,C42
`Chr2:68537961`	`C`	`T`	EMS_canonical_SNV	CDS_variant	1	C27

进入 EMS 突变库

预测功能结构域

结构域结果来自 Pfam-A HMM 数据库和 HMMER hmmscan；位置为对应蛋白序列上的氨基酸坐标。

XP_057791531.1

164 aa

164

EF-hand_1

EF-hand_7

EF-hand_6

EF-hand_5

EF-hand_8

EF-hand_1

EF-hand_5

EF-hand_8

EF-hand_7

EF-hand_1

EF-hand_6

EF-hand_5

EF-hand_8

EF-hand_1

EF-hand_5

PF00036 EF-hand_1 20-48 aa PF13499 EF-hand_7 21-80 aa PF13405 EF-hand_6 22-49 aa PF13202 EF-hand_5 23-42 aa PF13833 EF-hand_8 33-80 aa PF00036 EF-hand_1 56-81 aa PF13202 EF-hand_5 60-80 aa PF13833 EF-hand_8 92-120 aa PF13499 EF-hand_7 92-156 aa PF00036 EF-hand_1 94-122 aa PF13405 EF-hand_6 94-123 aa PF13202 EF-hand_5 95-118 aa PF13833 EF-hand_8 110-156 aa PF00036 EF-hand_1 134-157 aa PF13202 EF-hand_5 136-155 aa

Protein ID	来源	结构域编号	结构域名称	类型	起始 aa	终止 aa	E-value	Score	说明
`XP_057791531.1`	Pfam	`PF00036`	EF-hand_1	Domain	20	48	8.4e-37	122.7	EF hand domain
`XP_057791531.1`	Pfam	`PF13499`	EF-hand_7	Domain	21	80	1.8e-34	118.6	EF-hand domain pair
`XP_057791531.1`	Pfam	`PF13405`	EF-hand_6	Domain	22	49	5.7e-31	103.9	EF-hand domain
`XP_057791531.1`	Pfam	`PF13202`	EF-hand_5	Domain	23	42	3.3e-28	96.5	EF hand
`XP_057791531.1`	Pfam	`PF13833`	EF-hand_8	Domain	33	80	1.7e-22	79.6	EF-hand domain pair
`XP_057791531.1`	Pfam	`PF00036`	EF-hand_1	Domain	56	81	8.4e-37	122.7	EF hand domain
`XP_057791531.1`	Pfam	`PF13202`	EF-hand_5	Domain	60	80	3.3e-28	96.5	EF hand
`XP_057791531.1`	Pfam	`PF13833`	EF-hand_8	Domain	92	120	1.7e-22	79.6	EF-hand domain pair
`XP_057791531.1`	Pfam	`PF13499`	EF-hand_7	Domain	92	156	1.8e-34	118.6	EF-hand domain pair
`XP_057791531.1`	Pfam	`PF00036`	EF-hand_1	Domain	94	122	8.4e-37	122.7	EF hand domain
`XP_057791531.1`	Pfam	`PF13405`	EF-hand_6	Domain	94	123	5.7e-31	103.9	EF-hand domain
`XP_057791531.1`	Pfam	`PF13202`	EF-hand_5	Domain	95	118	3.3e-28	96.5	EF hand
`XP_057791531.1`	Pfam	`PF13833`	EF-hand_8	Domain	110	156	1.7e-22	79.6	EF-hand domain pair
`XP_057791531.1`	Pfam	`PF00036`	EF-hand_1	Domain	134	157	8.4e-37	122.7	EF hand domain
`XP_057791531.1`	Pfam	`PF13202`	EF-hand_5	Domain	136	155	3.3e-28	96.5	EF hand

cDNA / CDS / Protein 序列

下载基因组 DNA（仅基因区域）

每个公开基因均提供参考注释对应的转录本序列；蛋白编码基因另提供 CDS 和蛋白序列。非编码 RNA 不适用 CDS 或蛋白下载。真实 accession 的版本后缀予以保留。

cDNA

1 records

下载 cDNA FASTA

XM_057935548.1
GACGTAGTAATAAACTTTAATAAAAAAATGAAATTAAAATTGGATTAGAAATGACACACGGCCGACTAACAATAGTTACAAAATAAGGAAAGGAGGAGGAGGTTTCAGGCCTTCCGCGTATACAAAATTTGAGATTCGAAAATGTATAGAGTCACCATCTTTAATTAGTACAGAACGCGTAGTAGTAGTAGTAGTAGCGCCTATAAAATACTATACAATTCCCCACTGTATATATCATCTCTCTCTCTCTCTCTCTCTTA...

CDS

1 records

下载 CDS FASTA

LOC131008610
ATGGGCACCAATCAACCCCCAAACCCCAAGCCCTCAATGTACCTCGAAGACATGAACGAGGTCGCCAAAGTCTTCGCGCGCTTTGACGCCAACAACGACGGCAAGATCTCCGCCGAGGAGCTCGGCGGCGTCCTCAAGGCCCTCGGATCCGCAACCTCCGCCGACGAGGTCGAGCGGATGATGCAGGAGCTCGACACCGACCGCGACGGCCACATCAACCTGGAGGAGTTCGCCGCCTTCTGCAACGGCAGCACCGACCC...

Protein

1 records

下载 Protein FASTA

XP_057791531.1
MGTNQPPNPKPSMYLEDMNEVAKVFARFDANNDGKISAEELGGVLKALGSATSADEVERMMQELDTDRDGHINLEEFAAFCNGSTDPYHSAEKELREAFKLYDQDHDGKISVAELHQILSRLGDRSSEHDCAGMIKSVDSDGDGFVNFQEFRKMMTSSSRNTAA

上下游序列下载

upstream/downstream 最大各 10000 bp。负链基因会自动反向互补，使最终 FASTA 为转录方向 5′→3′。

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