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中文 EN

Gene Card 基因详情

支持统一新 ID、NCBI Gene ID、GeneID、locus_tag、Transcript ID、Protein ID，以及已人工核对的文献基因名查询。页面会先解析到丹参统一基因，再整合坐标、序列、注释、亚细胞定位、EMS 突变和下载入口。
示例

当前解析结果

SmilChr02G004610

染色体: Chr02 坐标: 68602866-68627040 链方向: + 类型: protein_coding

基本信息

统一新 Gene IDSmilChr02G004610
名称SmilChr02G004610
描述uncharacterized SmilChr02G004610
染色体 / SeqIDChr02 / NC_080388.1
坐标与链方向68602866 - 68627040 / +

ID 对照

NCBI Gene IDLOC131008563
GeneID131008563
locus_tag-
NCBI NameLOC131008563
原始查询SmilChr02G004610

查看完整 ID 对照表

功能注释

来源GFF basic annotation; NCBI GO GAF; Pfam-A/HMMER; Arabidopsis/Rice homolog
描述ketose-bisphosphate aldolase class-II family protein [Source:NCBI gene (formerly Entrezgene);Acc:838407]; symbol=AT1G18270; hit=AT1G18270; species=arabidopsis; confidence=high
产物ketose-bisphosphate aldolase class-II family protein [Source:NCBI gene (formerly Entrezgene);Acc:838407]; symbol=AT1G18270; hit=AT1G18270; species=arabidopsis; confidence=high
ArabidopsisAT1G18270 (AT1G18270)
ketose-bisphosphate aldolase class-II family protein [Source:NCBI gene (formerly Entrezgene);Acc:838407]
identity=70.6; qcov=0.995; evalue=0; confidence=high
RiceOs06g0258900 (P0603C10.39-1)
-
identity=67.4; qcov=0.994; evalue=0; confidence=high
GOGO:0005975 (carbohydrate metabolic process); GO:0008270 (zinc ion binding); GO:0016491 (oxidoreductase activity); GO:0016832 (aldehyde-lyase activity); GO:0050661 (NADP binding); GO:0051287 (NAD binding)
KEGG-
PfamPF01116 (F_bP_aldolase); PF03446 (NAD_binding_2); PF07005 (SBD_N); PF14833 (NAD_binding_11); PF17042 (NBD_C)
InterPro-
eggNOG-
NRGeneID:131008563

打开注释模块

亚细胞定位 Top 5

Rank定位位置中文ScoreProtein ID
1 Cytosol 细胞质基质 1.00000 XP_057791465.1
2 Cytoplasm 细胞质 0.80000 XP_057791465.1
3 Peroxisome 过氧化物酶体 0.20000 XP_057791465.1
4 Nucleus 细胞核 0.00000 XP_057791466.1
5 Chromosome 染色体 0.00000 XP_057791466.1

进入亚细胞定位查询

EMS 诱变突变

下表显示该基因在丹参 EMS 材料中的前 12 个候选突变；完整结果可进入 EMS 突变库继续筛选或下载。

位置 REF ALT 类型 影响 携带材料数 材料
Chr2:68604708 C T EMS_canonical_SNV CDS_variant 1 D11
Chr2:68604882 G A EMS_canonical_SNV CDS_variant 1 C27
Chr2:68606210 G A EMS_canonical_SNV CDS_variant 4 A18,B100,C38,C70
Chr2:68608859 G A EMS_canonical_SNV CDS_variant 4 B108,B20,C62,C78
Chr2:68612076 G A EMS_canonical_SNV CDS_variant 1 B103
Chr2:68619184 C T EMS_canonical_SNV CDS_variant 1 C6
Chr2:68619229 G A EMS_canonical_SNV CDS_variant 2 C31,C7
Chr2:68620255 C T EMS_canonical_SNV CDS_variant 1 D7
Chr2:68620498 C T EMS_canonical_SNV CDS_variant 2 A11,A3
Chr2:68620515 C T EMS_canonical_SNV CDS_variant 5 A19,B111,B118,B45,C46
Chr2:68620774 G A EMS_canonical_SNV CDS_variant 1 C36
Chr2:68620795 C T EMS_canonical_SNV CDS_variant 2 B27,B44

进入 EMS 突变库

预测功能结构域

结构域结果来自 Pfam-A HMM 数据库和 HMMER hmmscan；位置为对应蛋白序列上的氨基酸坐标。

XP_057791465.1
1377 aa
N
1
688
1377
NAD_binding_2
NAD_binding_11
NAD_binding_2
NAD_binding_11
SBD_N
NBD_C
F_bP_aldolase
C
PF03446 NAD_binding_2 8-165 aa PF14833 NAD_binding_11 172-291 aa PF03446 NAD_binding_2 327-485 aa PF14833 NAD_binding_11 492-612 aa PF07005 SBD_N 659-896 aa PF17042 NBD_C 921-1086 aa PF01116 F_bP_aldolase 1101-1376 aa
XP_057791466.1
1253 aa
N
1
626
1253
NAD_binding_11
NAD_binding_2
NAD_binding_11
SBD_N
NBD_C
F_bP_aldolase
C
PF14833 NAD_binding_11 48-167 aa PF03446 NAD_binding_2 203-361 aa PF14833 NAD_binding_11 368-488 aa PF07005 SBD_N 535-772 aa PF17042 NBD_C 797-962 aa PF01116 F_bP_aldolase 977-1252 aa
XP_057791467.1
1246 aa
N
1
623
1246
NAD_binding_11
NAD_binding_2
NAD_binding_11
SBD_N
NBD_C
F_bP_aldolase
C
PF14833 NAD_binding_11 41-160 aa PF03446 NAD_binding_2 196-354 aa PF14833 NAD_binding_11 361-481 aa PF07005 SBD_N 528-765 aa PF17042 NBD_C 790-955 aa PF01116 F_bP_aldolase 970-1245 aa
Protein ID 来源 结构域编号 结构域名称 类型 起始 aa 终止 aa E-value Score 说明
XP_057791465.1 Pfam PF03446 NAD_binding_2 Domain 8 165 6.2e-55 186.3 NAD binding domain of 6-phosphogluconate dehydrogenase
XP_057791465.1 Pfam PF14833 NAD_binding_11 Domain 172 291 2.8e-50 170.4 NAD-binding of NADP-dependent 3-hydroxyisobutyrate dehydrogenase
XP_057791465.1 Pfam PF03446 NAD_binding_2 Domain 327 485 6.2e-55 186.3 NAD binding domain of 6-phosphogluconate dehydrogenase
XP_057791465.1 Pfam PF14833 NAD_binding_11 Domain 492 612 2.8e-50 170.4 NAD-binding of NADP-dependent 3-hydroxyisobutyrate dehydrogenase
XP_057791465.1 Pfam PF07005 SBD_N Domain 659 896 8.7e-58 196.5 Sugar-binding N-terminal domain
XP_057791465.1 Pfam PF17042 NBD_C Domain 921 1086 7.4e-37 128.1 Nucleotide-binding C-terminal domain
XP_057791465.1 Pfam PF01116 F_bP_aldolase Domain 1101 1376 2.1e-91 307.0 Fructose-bisphosphate aldolase class-II
XP_057791466.1 Pfam PF14833 NAD_binding_11 Domain 48 167 2.2e-50 170.7 NAD-binding of NADP-dependent 3-hydroxyisobutyrate dehydrogenase
XP_057791466.1 Pfam PF03446 NAD_binding_2 Domain 203 361 2.6e-39 135.6 NAD binding domain of 6-phosphogluconate dehydrogenase
XP_057791466.1 Pfam PF14833 NAD_binding_11 Domain 368 488 2.2e-50 170.7 NAD-binding of NADP-dependent 3-hydroxyisobutyrate dehydrogenase
XP_057791466.1 Pfam PF07005 SBD_N Domain 535 772 7.5e-58 196.7 Sugar-binding N-terminal domain
XP_057791466.1 Pfam PF17042 NBD_C Domain 797 962 7.8e-37 128.1 Nucleotide-binding C-terminal domain
XP_057791466.1 Pfam PF01116 F_bP_aldolase Domain 977 1252 1.8e-91 307.3 Fructose-bisphosphate aldolase class-II
XP_057791467.1 Pfam PF14833 NAD_binding_11 Domain 41 160 2.2e-50 170.7 NAD-binding of NADP-dependent 3-hydroxyisobutyrate dehydrogenase
XP_057791467.1 Pfam PF03446 NAD_binding_2 Domain 196 354 1.5e-38 133.0 NAD binding domain of 6-phosphogluconate dehydrogenase
XP_057791467.1 Pfam PF14833 NAD_binding_11 Domain 361 481 2.2e-50 170.7 NAD-binding of NADP-dependent 3-hydroxyisobutyrate dehydrogenase
XP_057791467.1 Pfam PF07005 SBD_N Domain 528 765 7.5e-58 196.8 Sugar-binding N-terminal domain
XP_057791467.1 Pfam PF17042 NBD_C Domain 790 955 8e-37 128.0 Nucleotide-binding C-terminal domain
XP_057791467.1 Pfam PF01116 F_bP_aldolase Domain 970 1245 1.8e-91 307.3 Fructose-bisphosphate aldolase class-II

cDNA / CDS / Protein 序列

下载基因组 DNA（仅基因区域）

每个公开基因均提供参考注释对应的转录本序列；蛋白编码基因另提供 CDS 和蛋白序列。非编码 RNA 不适用 CDS 或蛋白下载。真实 accession 的版本后缀予以保留。

cDNA

3 records

下载 cDNA FASTA
XM_057935482.1
TATATTACGTAAACAAAAATCAATATGGCAGCGCTCAAGGATTTCGAGTTCATCCCCATCCCAAGAGCTGTGTCAGCAAAAGCCTGTTTTCTCCTTATATTCGTCTAAAGTCTTGGTCGTGCCGTGCTCTACATGATATTTATACACACTTTTGAAGGAAAACGAGTTGAGATATTTCTGTGATATTGATTTATTCATCGTACAACAAGTGCATCGATCGTGTGTGTGGAAATGGCCAAAGCCGGTGGTGTAGTCGGGTT...
XM_057935483.1
TCACAGCACTGTTGTGCCTTCATTGAAGTACCACTTGTCGTTTGTTTCTTCCTTATAATATGGCCTCTGCTTCTACGACTTTCATTTGGACTGCCGTGTTGGACCTTTGGCTACATTGAAACCATCCTGCTGAGGTGTGAATGCTTTGGTCACACTGATATCTCACACTGATCAAATAGATGATCTCTTTCATGATGACGAGGGTGTTCTAAAAGGATTGCCAACAGATGTAATCATCATTATCCACTCAACCGTACTAC...

CDS

3 records

下载 CDS FASTA
LOC131008563
ATGGCCAAAGCCGGTGGTGTAGTCGGGTTTGTGGGGTTGGATGATATTTCTTTGGAGTTGGCTGCTTCTCTTTTGCGCTCTGGCTATTCTGTTCAGGCGTTTGAGAAATCCAGTCAACTGATGAATGACTTCTCAAATCTCGGCGGTAAAAGGTGTGCCAATCTGACTGAGATAAAGCAAGGTGTGAATGCTTTGGTCACACTGATATCTCACACTGATCAAATAGATGATCTCTTTCATGATGACGAGGGTGTTCTAAA...
LOC131008563
ATGTGTGCCTTAAAAGCAGTCTCTGAAGTCTCAAATGGAAAAGTCATGATTATTTCTTCTGGGCGATCCGAGTCGACCTCTAGGGCAAAGCCCTTCCTTTCAGCTATGGGCGAGAAACTTTTCTTTTTTGAGGGTGATGTAGGTGCGGGCAGCAAAAGTAAAATGATAATTGAGCTTCTTGAAGGAATTCACCTCATAGCTTCTCTTGAAGCCATCTCTCTGGGTACTCAAGCTGGGATACATCCACGGATAATATATGA...

Protein

3 records

下载 Protein FASTA
XP_057791465.1
MAKAGGVVGFVGLDDISLELAASLLRSGYSVQAFEKSSQLMNDFSNLGGKRCANLTEIKQGVNALVTLISHTDQIDDLFHDDEGVLKGLPTDVIIIIHSTVLPVHIEKLEKSLTEDHHIEVVVDMCALKAVSEVSNGKVMIISSGRSESTSRAKPFLSAMGEKLFFFEGDVGAGSKSKMIIELLEGIHLIASLEAISLGTQAGIHPRIIYDIVSNAAGNSWVFKNYILNLLENNLSTSHLFYTFNQNLGIILEMASSLIF...
XP_057791466.1
MCALKAVSEVSNGKVMIISSGRSESTSRAKPFLSAMGEKLFFFEGDVGAGSKSKMIIELLEGIHLIASLEAISLGTQAGIHPRIIYDIVSNAAGNSWVFKNYILNLLENNLSTSHLFYTFNQNLGIILEMASSLIFPLPLTSVAQQQILAGCTHGGKEDENTTLLKVWEELSGVNIIDAANAKLYNPEEMAKQLSAKSKTVKRIGFIGLGAMGFGMATHLLKSNFTVLGYDVYRPSLSRFENEGGIGGSSPAEVSKDVDV...

上下游序列下载

upstream/downstream 最大各 10000 bp。负链基因会自动反向互补，使最终 FASTA 为转录方向 5′→3′。

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JBrowse

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