Gene Card 基因详情

支持统一新 ID、NCBI Gene ID、GeneID、locus_tag、Transcript ID、Protein ID，以及已人工核对的文献基因名查询。页面会先解析到丹参统一基因，再整合坐标、序列、注释、亚细胞定位、EMS 突变和下载入口。

当前解析结果

`SmilChr02G004612`

染色体: Chr02 坐标: 68633935-68651269 链方向: - 类型: protein_coding

基本信息

统一新 Gene ID	`SmilChr02G004612`
名称	SmilChr02G004612
描述	ADP-ribosylation factor GTPase-activating protein AGD3-like
染色体 / SeqID	Chr02 / NC_080388.1
坐标与链方向	68633935 - 68651269 / `-`

ID 对照

NCBI Gene ID	`LOC131008572`
GeneID	`131008572`
locus_tag	`-`
NCBI Name	`LOC131008572`
原始查询	`SmilChr02G004612`

查看完整 ID 对照表

功能注释

来源	GFF basic annotation; NCBI GO GAF; KEGG smil; Pfam-A/HMMER; Arabidopsis/Rice homolog
描述	ADP-ribosylation factor GTPase-activating protein AGD3-like
产物	ADP-ribosylation factor GTPase-activating protein AGD3-like
Arabidopsis	`AT5G13300` (SFC) ARF GTPase-activating protein [Source:NCBI gene (formerly Entrezgene);Acc:831171] identity=62; qcov=1.04; evalue=0; confidence=high
Rice	`Os09g0510700` - identity=61; qcov=1.04; evalue=0; confidence=high
GO	GO:0005096 (GTPase activator activity); GO:0005515 (protein binding); GO:0005737 (cytoplasm)
KEGG	smil04144 (Endocytosis - Salvia miltiorrhiza (redroot sage))
Pfam	PF00023 (Ank); PF00169 (PH); PF01412 (ArfGap); PF03114 (BAR); PF12796 (Ank_2); PF13606 (Ank_3); PF13637 (Ank_4); PF13857 (Ank_5); PF16746 (BAR_3)
InterPro	-
eggNOG	-
NR	GeneID:131008572

打开注释模块

亚细胞定位 Top 5

Rank	定位位置	中文	Score	Protein ID
1	Cytoplasm	细胞质	1.00000	`XP_057791482.1`
2	Cytosol	细胞质基质	1.00000	`XP_057791482.1`
3	Trans-golgi network	Trans-golgi network	0.20000	`XP_057791482.1`
4	Nucleus	细胞核	0.00000	`XP_057791482.1`
5	Chromosome	染色体	0.00000	`XP_057791482.1`

进入亚细胞定位查询

EMS 诱变突变

下表显示该基因在丹参 EMS 材料中的前 12 个候选突变；完整结果可进入 EMS 突变库继续筛选或下载。

位置	REF	ALT	类型	影响	携带材料数	材料
`Chr2:68634243`	`G`	`A`	EMS_canonical_SNV	CDS_variant	1	D6
`Chr2:68634318`	`C`	`T`	EMS_canonical_SNV	CDS_variant	1	B37
`Chr2:68635037`	`G`	`A`	EMS_canonical_SNV	CDS_variant	3	B13,B14,B25
`Chr2:68635174`	`C`	`T`	EMS_canonical_SNV	CDS_variant	4	B108,B20,C62,C78
`Chr2:68635204`	`C`	`T`	EMS_canonical_SNV	CDS_variant	4	B108,B20,C62,C78
`Chr2:68635273`	`G`	`A`	EMS_canonical_SNV	CDS_variant	1	B37
`Chr2:68635310`	`C`	`T`	EMS_canonical_SNV	CDS_variant	1	B13
`Chr2:68636224`	`G`	`A`	EMS_canonical_SNV	CDS_variant	1	B2
`Chr2:68636411`	`C`	`T`	EMS_canonical_SNV	CDS_variant	1	B107
`Chr2:68636435`	`G`	`A`	EMS_canonical_SNV	CDS_variant	1	D11
`Chr2:68636452`	`TCA`	`T`	2bp_deletion	frameshift_variant	1	B51
`Chr2:68636452`	`TCA`	`T`	2bp_deletion	CDS_variant	1	B51

进入 EMS 突变库

预测功能结构域

结构域结果来自 Pfam-A HMM 数据库和 HMMER hmmscan；位置为对应蛋白序列上的氨基酸坐标。

XP_057791482.1

811 aa

406

811

BAR_3

BAR

ArfGap

Ank_2

Ank_3

Ank

Ank_4

Ank_2

Ank_5

Ank

PF16746 BAR_3 11-239 aa PF03114 BAR 24-219 aa PF00169 PH 299-433 aa PF01412 ArfGap 497-604 aa PF12796 Ank_2 714-781 aa PF13606 Ank_3 718-746 aa PF00023 Ank 718-749 aa PF13637 Ank_4 723-772 aa PF12796 Ank_2 723-804 aa PF13857 Ank_5 750-791 aa PF00023 Ank 752-783 aa

Protein ID	来源	结构域编号	结构域名称	类型	起始 aa	终止 aa	E-value	Score	说明
`XP_057791482.1`	Pfam	`PF16746`	BAR_3	Domain	11	239	1.2e-35	124.0	BAR domain of APPL family
`XP_057791482.1`	Pfam	`PF03114`	BAR	Domain	24	219	2.3e-11	44.5	BAR domain
`XP_057791482.1`	Pfam	`PF00169`	PH	Domain	299	433	2.5e-12	48.0	PH domain
`XP_057791482.1`	Pfam	`PF01412`	ArfGap	Domain	497	604	1.3e-34	119.5	Putative GTPase activating protein for Arf
`XP_057791482.1`	Pfam	`PF12796`	Ank_2	Repeat	714	781	1.4e-22	80.8	Ankyrin repeats (3 copies)
`XP_057791482.1`	Pfam	`PF13606`	Ank_3	Repeat	718	746	2.5e-10	40.3	Ankyrin repeat
`XP_057791482.1`	Pfam	`PF00023`	Ank	Repeat	718	749	1.8e-15	56.9	Ankyrin repeat
`XP_057791482.1`	Pfam	`PF13637`	Ank_4	Repeat	723	772	5.8e-10	39.9	Ankyrin repeats (many copies)
`XP_057791482.1`	Pfam	`PF12796`	Ank_2	Repeat	723	804	1.4e-22	80.8	Ankyrin repeats (3 copies)
`XP_057791482.1`	Pfam	`PF13857`	Ank_5	Repeat	750	791	6.8e-11	43.0	Ankyrin repeats (many copies)
`XP_057791482.1`	Pfam	`PF00023`	Ank	Repeat	752	783	1.8e-15	56.9	Ankyrin repeat

cDNA / CDS / Protein 序列

下载基因组 DNA（仅基因区域）

每个公开基因均提供参考注释对应的转录本序列；蛋白编码基因另提供 CDS 和蛋白序列。非编码 RNA 不适用 CDS 或蛋白下载。真实 accession 的版本后缀予以保留。

cDNA

1 records

下载 cDNA FASTA

XM_057935499.1
AGAAATTAAAAATTGCTCACACAAACAACCGCATTGTTTTACACAGTCCCCTATCCACCCATTCTTCATTTTCTCCTCCATTATCGCTCCTATTTATTGTTCATCGTTTTTCTTCTGCTTCTTTACCATATGTTATTCTAATCTCTCTCATTCCTTCCAGAATTTCATCTATCACACAGTTTTACATCAAGATTTTGCATAGGAATGTGATCTTTGATTTTAAATTCGCTGATCGCATTGTGTGGGGGATTTTGCTATCT...

CDS

1 records

下载 CDS FASTA

LOC131008572
ATGCAAGAAGGAAACATGTTTTTCGCTAGGCTAGACGATTCGCCCATGTTCCGTCAACAGATCCAGTTGATGGAAGAAAGTGCCGAGACATTAAGGGAAAGAAGTATCAAGTTTCATAAAGGTTGTCGAAAATACGTAGATGGGCTTGGAGAAGCATATGATAGAGATATTTCTTTTGCAAGCGCCCTTGAAGCTTTTGCTGGAGGACATAATGATCCTATCTCTGTGGCATTTGGAGGCCCTGATATGACAAAGTTTGC...

Protein

1 records

下载 Protein FASTA

XP_057791482.1
MQEGNMFFARLDDSPMFRQQIQLMEESAETLRERSIKFHKGCRKYVDGLGEAYDRDISFASALEAFAGGHNDPISVAFGGPDMTKFAIVLREIGTYKETLRSQVELVLNDKLMHFANVDAQDIKDAHKRFDKATIIYDQVREKFLSLRKSARIDIASALEEELHNARSTFEQTRFNLVGALSAVEAKKKFEFLEAVGNTMDAHLRYFKQGYELLHQMEPCINKVLASAQEARENSNHEISTLNERMQDYIRQVDEEGRRS...

上下游序列下载

upstream/downstream 最大各 10000 bp。负链基因会自动反向互补，使最终 FASTA 为转录方向 5′→3′。

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JBrowse

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