Gene Card 基因详情

支持统一新 ID、NCBI Gene ID、GeneID、locus_tag、Transcript ID、Protein ID，以及已人工核对的文献基因名查询。页面会先解析到丹参统一基因，再整合坐标、序列、注释、亚细胞定位、EMS 突变和下载入口。

当前解析结果

`SmilChr02G004613`

染色体: Chr02 坐标: 68654431-68662893 链方向: + 类型: protein_coding

基本信息

统一新 Gene ID	`SmilChr02G004613`
名称	SmilChr02G004613
描述	uncharacterized SmilChr02G004613
染色体 / SeqID	Chr02 / NC_080388.1
坐标与链方向	68654431 - 68662893 / `+`

ID 对照

NCBI Gene ID	`LOC131008579`
GeneID	`131008579`
locus_tag	`-`
NCBI Name	`LOC131008579`
原始查询	`SmilChr02G004613`

查看完整 ID 对照表

功能注释

来源	GFF basic annotation; NCBI GO GAF; Pfam-A/HMMER; Arabidopsis/Rice homolog
描述	transducin family protein / WD-40 repeat family protein [Source:NCBI gene (formerly Entrezgene);Acc:835170]; symbol=AT5G50970; hit=AT5G50970; species=arabidopsis; confidence=high
产物	transducin family protein / WD-40 repeat family protein [Source:NCBI gene (formerly Entrezgene);Acc:835170]; symbol=AT5G50970; hit=AT5G50970; species=arabidopsis; confidence=high
Arabidopsis	`AT5G50970` (AT5G50970) transducin family protein / WD-40 repeat family protein [Source:NCBI gene (formerly Entrezgene);Acc:835170] identity=54.6; qcov=0.935; evalue=0; confidence=high
Rice	`Os03g0851600` (OsWD40-96) - identity=64.7; qcov=0.613; evalue=5.05e-173; confidence=high
GO	GO:0005515 (protein binding)
KEGG	-
Pfam	PF00400 (WD40)
InterPro	-
eggNOG	-
NR	GeneID:131008579

打开注释模块

亚细胞定位 Top 5

Rank	定位位置	中文	Score	Protein ID
1	Nucleus	细胞核	1.00000	`XP_057791492.1`
2	Nucleoplasm	核质	1.00000	`XP_057791492.1`
3	Chromosome	染色体	0.80000	`XP_057791492.1`
4	Nuclear body	核内小体	0.80000	`XP_057791492.1`
5	Centromere	着丝粒	0.00000	`XP_057791492.1`

进入亚细胞定位查询

EMS 诱变突变

下表显示该基因在丹参 EMS 材料中的前 12 个候选突变；完整结果可进入 EMS 突变库继续筛选或下载。

位置	REF	ALT	类型	影响	携带材料数	材料
`Chr2:68654754`	`G`	`A`	EMS_canonical_SNV	CDS_variant	1	D11
`Chr2:68654826`	`G`	`A`	EMS_canonical_SNV	CDS_variant	1	B104
`Chr2:68656888`	`C`	`T`	EMS_canonical_SNV	CDS_variant	1	B25
`Chr2:68656890`	`G`	`A`	EMS_canonical_SNV	CDS_variant	2	B75,D11
`Chr2:68657210`	`G`	`A`	EMS_canonical_SNV	CDS_variant	4	B135,B15,B32,C74
`Chr2:68657224`	`C`	`T`	EMS_canonical_SNV	CDS_variant	1	B25
`Chr2:68657259`	`C`	`T`	EMS_canonical_SNV	CDS_variant	1	C86
`Chr2:68657566`	`G`	`A`	EMS_canonical_SNV	CDS_variant	1	B1
`Chr2:68661271`	`C`	`T`	EMS_canonical_SNV	CDS_variant	1	B13
`Chr2:68661510`	`C`	`T`	EMS_canonical_SNV	CDS_variant	1	C27
`Chr2:68661540`	`C`	`T`	EMS_canonical_SNV	CDS_variant	1	D4
`Chr2:68662362`	`C`	`T`	EMS_canonical_SNV	CDS_variant	1	B49

进入 EMS 突变库

预测功能结构域

结构域结果来自 Pfam-A HMM 数据库和 HMMER hmmscan；位置为对应蛋白序列上的氨基酸坐标。

XP_057791492.1

582 aa

291

582

WD40

PF00400 WD40 364-395 aa PF00400 WD40 515-536 aa

Protein ID	来源	结构域编号	结构域名称	类型	起始 aa	终止 aa	E-value	Score	说明
`XP_057791492.1`	Pfam	`PF00400`	WD40	Repeat	364	395	9.6e-14	51.9	WD domain, G-beta repeat
`XP_057791492.1`	Pfam	`PF00400`	WD40	Repeat	515	536	9.6e-14	51.9	WD domain, G-beta repeat

cDNA / CDS / Protein 序列

下载基因组 DNA（仅基因区域）

每个公开基因均提供参考注释对应的转录本序列；蛋白编码基因另提供 CDS 和蛋白序列。非编码 RNA 不适用 CDS 或蛋白下载。真实 accession 的版本后缀予以保留。

cDNA

1 records

下载 cDNA FASTA

XM_057935509.1
ATTTTGAAGCAATTATCTTTTTTTTTTGTTCTTGTAGGATTCACCAGTAGAAACGCATTTTGGTACTATCTTCTAATTCTAAACCCTACAAATCATCCAAATTAATTTTTCAAACCGTATTCTCCCACTCGCACTAACTCAATTATCTCTTGTCCGAGAATCTAGAGATGCACTAAAACACAAACCTATCAAAGACTCGTAATCGCTTTTTGAATCGATAGTATGAGCGGGCATCCCCTCTTGAAGAAGCCCAAAACCGA...

CDS

1 records

下载 CDS FASTA

LOC131008579
ATGAGCGGGCATCCCCTCTTGAAGAAGCCCAAAACCGAGCCACAAGAAACAGCGCAACAACTGGAACAAGATGAAGAAGAGGAAAACAATGATGAAGAAATGGAAGAGCAAATCAGAAATGAGCAGGAAGAAGCGATGGTGGCCCTAATAGAACATCGCACCAAAGAAGTCGAGCACTTGCGCCAGCGCATTACTTACTATAAAGCCCAGCTTGATGAAGCAGAGAAGAAACTGGAAGATACCCAAAATAAATTAGCTCG...

Protein

1 records

下载 Protein FASTA

XP_057791492.1
MSGHPLLKKPKTEPQETAQQLEQDEEEENNDEEMEEQIRNEQEEAMVALIEHRTKEVEHLRQRITYYKAQLDEAEKKLEDTQNKLARHRGQKTSKASKNLTNGRKELNVERSKSPMTIREGSQRQSQRQDDVKPSGDTRRPSSPTYRNEASSPDQTQARPQILIPSVAPNFSQYKTKESANKYPSGSGSLPTLPTPSFVNTPAKSKGEKASKISSELDSITQPKRVKRKLEETEHKDLIKLISKSSSPVTVRCQSGTLLP...

上下游序列下载

upstream/downstream 最大各 10000 bp。负链基因会自动反向互补，使最终 FASTA 为转录方向 5′→3′。

下载 upstream 下载 downstream 下载 upstream + gene + downstream

JBrowse

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