Gene Card 基因详情

支持统一新 ID、NCBI Gene ID、GeneID、locus_tag、Transcript ID、Protein ID，以及已人工核对的文献基因名查询。页面会先解析到丹参统一基因，再整合坐标、序列、注释、亚细胞定位、EMS 突变和下载入口。

当前解析结果

`SmilChr02G004646`

染色体: Chr02 坐标: 68897174-68903776 链方向: + 类型: protein_coding

基本信息

统一新 Gene ID	`SmilChr02G004646`
名称	SmilChr02G004646
描述	alternative NAD(P)H-ubiquinone oxidoreductase C1, chloroplastic/mitochondrial
染色体 / SeqID	Chr02 / NC_080388.1
坐标与链方向	68897174 - 68903776 / `+`

ID 对照

NCBI Gene ID	`LOC131008639`
GeneID	`131008639`
locus_tag	`-`
NCBI Name	`LOC131008639`
原始查询	`SmilChr02G004646`

查看完整 ID 对照表

功能注释

来源	GFF basic annotation; NCBI GO GAF; KEGG smil; Pfam-A/HMMER; Arabidopsis/Rice homolog
描述	alternative NAD(P)H-ubiquinone oxidoreductase C1, chloroplastic/mitochondrial
产物	alternative NAD(P)H-ubiquinone oxidoreductase C1%2C chloroplastic/mitochondrial
Arabidopsis	`AT5G08740` (NDC1) NAD(P)H dehydrogenase C1 [Source:NCBI gene (formerly Entrezgene);Acc:830775] identity=70.2; qcov=0.885; evalue=0; confidence=high
Rice	`Os06g0214900` - identity=68.6; qcov=0.889; evalue=0; confidence=high
GO	GO:0003955 (NAD(P)H dehydrogenase (quinone) activity); GO:0009507 (chloroplast); GO:0019646 (aerobic electron transport chain); GO:0042372 (phylloquinone biosynthetic process)
KEGG	smil00130 (Ubiquinone and other terpenoid-quinone biosynthesis - Salvia miltiorrhiza (redroot sage)); smil01100 (Metabolic pathways - Salvia miltiorrhiza (redroot sage)); smil01110 (Biosynthesis of secondary metabolites - Salvia miltiorrhiza (redroot sage)); smil01240 (Biosynthesis of cofactors - Salvia miltiorrhiza (redroot sage))
Pfam	PF07992 (Pyr_redox_2)
InterPro	-
eggNOG	-
NR	GeneID:131008639

打开注释模块

亚细胞定位 Top 5

Rank	定位位置	中文	Score	Protein ID
1	Chloroplast	叶绿体	1.00000	`XP_057791567.1`
2	Chloroplast membrane	叶绿体膜	0.80000	`XP_057791567.1`
3	Chloroplast stroma	叶绿体基质	0.40000	`XP_057791567.1`
4	Nucleus	细胞核	0.00000	`XP_057791567.1`
5	Chromosome	染色体	0.00000	`XP_057791567.1`

进入亚细胞定位查询

EMS 诱变突变

下表显示该基因在丹参 EMS 材料中的前 12 个候选突变；完整结果可进入 EMS 突变库继续筛选或下载。

位置	REF	ALT	类型	影响	携带材料数	材料
`Chr2:68897446`	`G`	`A`	EMS_canonical_SNV	CDS_variant	4	B1,B97,C58,D4
`Chr2:68897448`	`G`	`A`	EMS_canonical_SNV	CDS_variant	1	B91
`Chr2:68897639`	`G`	`A`	EMS_canonical_SNV	CDS_variant	5	B109,B13,B65,C16,D1
`Chr2:68897698`	`G`	`A`	EMS_canonical_SNV	CDS_variant	1	B104
`Chr2:68897728`	`G`	`A`	EMS_canonical_SNV	CDS_variant	5	B109,B13,B65,C16,D1
`Chr2:68898536`	`G`	`A`	EMS_canonical_SNV	CDS_variant	2	A14,C43
`Chr2:68898606`	`C`	`T`	EMS_canonical_SNV	CDS_variant	5	B109,B13,B65,C16,D1
`Chr2:68898607`	`C`	`T`	EMS_canonical_SNV	CDS_variant	5	B109,B13,B65,C16,D1
`Chr2:68899520`	`C`	`T`	EMS_canonical_SNV	CDS_variant	4	B109,B13,B65,D1
`Chr2:68899556`	`TC`	`T`	1bp_deletion	frameshift_variant	5	B109,B13,B65,C16,D1
`Chr2:68899556`	`TC`	`T`	1bp_deletion	CDS_variant	5	B109,B13,B65,C16,D1
`Chr2:68899689`	`C`	`T`	EMS_canonical_SNV	CDS_variant	1	D10

进入 EMS 突变库

预测功能结构域

结构域结果来自 Pfam-A HMM 数据库和 HMMER hmmscan；位置为对应蛋白序列上的氨基酸坐标。

XP_057791567.1

530 aa

265

530

Pyr_redox_2

PF07992 Pyr_redox_2 82-430 aa

Protein ID	来源	结构域编号	结构域名称	类型	起始 aa	终止 aa	E-value	Score	说明
`XP_057791567.1`	Pfam	`PF07992`	Pyr_redox_2	Domain	82	430	5.1e-35	122.0	Pyridine nucleotide-disulphide oxidoreductase

cDNA / CDS / Protein 序列

下载基因组 DNA（仅基因区域）

每个公开基因均提供参考注释对应的转录本序列；蛋白编码基因另提供 CDS 和蛋白序列。非编码 RNA 不适用 CDS 或蛋白下载。真实 accession 的版本后缀予以保留。

cDNA

1 records

下载 cDNA FASTA

XM_057935584.1
CTTTCAAAATAGATTTCAAAGAAATTAGCTTAAAATCCAAAAATGTAATACTATTAAGATGACGACCCGGAAATTTCATAAATAAAATTAGCTCGAAACCTAGCGAATTGGATCGTAAACAATAGGTACCGGATAAATAAAGAAAACTTAACGTGATAAAAATCCGATCTTGCGCTCTTTTTTGCTAAAGTAAATTGTGGAACCAAAATAGCCACATCTCCGCGCATCACCCACCCTCAACCGCTACTCCCGCCCGCCGC...

CDS

1 records

下载 CDS FASTA

LOC131008639
ATGGCGCACGCAATTTCTTCTCTTGCATCATCTATGCTTTTCACTCGCGACCAGCTTCACTGCCGAAACCTTTTCCAGCGGCATTCGCGTGTATATCCAACTAATTCCGGACTCTTTTCCAGCTCCGTCCCAAGGCAAGGACTCCGCGTTTTTGGCTCGATCTCAAGCGGAAGATACGGCGGCGTCTCTGAAGATCAATCTCCGCCATCCAGTTACGCATGGCCGGAAAACAAGAAGAGACCAAGGGTGTGCATACTGGG...

Protein

1 records

下载 Protein FASTA

XP_057791567.1
MAHAISSLASSMLFTRDQLHCRNLFQRHSRVYPTNSGLFSSSVPRQGLRVFGSISSGRYGGVSEDQSPPSSYAWPENKKRPRVCILGGGFGGLYTALRLESLEWPDGKRPQVVLVDQSERFVFKPLLYELLSGEVDEWEIAPRFSDLLSNTTVQFFKDKVQALHPSDQLGMDAAALSQSAGTVHLESGLLIEYDWLVLALGSDAKLDVVPGAMEYALPFSTLEDARRVNEKLTALERKYFGKDYPIHVAIVGCGYSGVEL...

上下游序列下载

upstream/downstream 最大各 10000 bp。负链基因会自动反向互补，使最终 FASTA 为转录方向 5′→3′。

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JBrowse

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