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中文 EN

Gene Card 基因详情

支持统一新 ID、NCBI Gene ID、GeneID、locus_tag、Transcript ID、Protein ID，以及已人工核对的文献基因名查询。页面会先解析到丹参统一基因，再整合坐标、序列、注释、亚细胞定位、EMS 突变和下载入口。
示例

当前解析结果

SmilChr02G004647

染色体: Chr02 坐标: 68906280-68912120 链方向: - 类型: protein_coding

基本信息

统一新 Gene IDSmilChr02G004647
名称SmilChr02G004647
描述filament-like plant protein 3
染色体 / SeqIDChr02 / NC_080388.1
坐标与链方向68906280 - 68912120 / -

ID 对照

NCBI Gene IDLOC131008641
GeneID131008641
locus_tag-
NCBI NameLOC131008641
原始查询SmilChr02G004647

查看完整 ID 对照表

功能注释

来源GFF basic annotation; Pfam-A/HMMER; Arabidopsis/Rice homolog
描述filament-like plant protein 3
产物filament-like plant protein 3
ArabidopsisAT3G05270 (AT3G05270)
filament-like protein (DUF869) [Source:NCBI gene (formerly Entrezgene);Acc:819691]
identity=42.3; qcov=1.04; evalue=2.19e-131; confidence=medium
RiceOs11g0170200
-
identity=40.1; qcov=0.887; evalue=2.69e-98; confidence=medium
GO-
KEGG-
PfamPF05911 (FPP)
InterPro-
eggNOG-
NRGeneID:131008641

打开注释模块

亚细胞定位 Top 5

Rank定位位置中文ScoreProtein ID
1 Cell membrane 细胞膜 0.60000 XP_057791569.1
2 Cytoskeleton 细胞骨架 0.40000 XP_057791569.1
3 Cytosol 细胞质基质 0.40000 XP_057791569.1
4 Phragmoplast Phragmoplast 0.20000 XP_057791569.1
5 Nucleus 细胞核 0.00000 XP_057791569.1

进入亚细胞定位查询

EMS 诱变突变

下表显示该基因在丹参 EMS 材料中的前 12 个候选突变；完整结果可进入 EMS 突变库继续筛选或下载。

位置 REF ALT 类型 影响 携带材料数 材料
Chr2:68907165 C T EMS_canonical_SNV CDS_variant 1 B65
Chr2:68907350 C T EMS_canonical_SNV CDS_variant 3 B110,B78,C20
Chr2:68907381 C T EMS_canonical_SNV CDS_variant 1 B28
Chr2:68907412 G A EMS_canonical_SNV CDS_variant 1 B103
Chr2:68907505 C T EMS_canonical_SNV CDS_variant 2 B103,D11
Chr2:68907549 G A EMS_canonical_SNV CDS_variant 1 B104
Chr2:68907616 G A EMS_canonical_SNV CDS_variant 2 B78,C31
Chr2:68907628 C T EMS_canonical_SNV CDS_variant 3 B93,C2,C42
Chr2:68907705 G A EMS_canonical_SNV CDS_variant 1 B24
Chr2:68907800 G A EMS_canonical_SNV CDS_variant 2 C39,C47
Chr2:68907829 G A EMS_canonical_SNV CDS_variant 3 B110,C16,C21
Chr2:68907888 C T EMS_canonical_SNV CDS_variant 2 B30,C57

进入 EMS 突变库

预测功能结构域

结构域结果来自 Pfam-A HMM 数据库和 HMMER hmmscan；位置为对应蛋白序列上的氨基酸坐标。

XP_057791569.1
647 aa
N
1
324
647
FPP
FPP
FPP
C
PF05911 FPP 92-202 aa PF05911 FPP 206-274 aa PF05911 FPP 482-632 aa
XP_057791570.1
647 aa
N
1
324
647
FPP
FPP
FPP
C
PF05911 FPP 92-202 aa PF05911 FPP 206-274 aa PF05911 FPP 482-632 aa
XP_057791571.1
647 aa
N
1
324
647
FPP
FPP
FPP
C
PF05911 FPP 92-202 aa PF05911 FPP 206-274 aa PF05911 FPP 482-632 aa
XP_057791572.1
647 aa
N
1
324
647
FPP
FPP
FPP
C
PF05911 FPP 92-202 aa PF05911 FPP 206-274 aa PF05911 FPP 482-632 aa
XP_057791573.1
647 aa
N
1
324
647
FPP
FPP
FPP
C
PF05911 FPP 92-202 aa PF05911 FPP 206-274 aa PF05911 FPP 482-632 aa
XP_057791574.1
647 aa
N
1
324
647
FPP
FPP
FPP
C
PF05911 FPP 92-202 aa PF05911 FPP 206-274 aa PF05911 FPP 482-632 aa
XP_057791575.1
647 aa
N
1
324
647
FPP
FPP
FPP
C
PF05911 FPP 92-202 aa PF05911 FPP 206-274 aa PF05911 FPP 482-632 aa
Protein ID 来源 结构域编号 结构域名称 类型 起始 aa 终止 aa E-value Score 说明
XP_057791569.1 Pfam PF05911 FPP Coiled-coil 92 202 1.1e-85 289.4 Filament-like plant protein, long coiled-coil
XP_057791569.1 Pfam PF05911 FPP Coiled-coil 206 274 1.1e-85 289.4 Filament-like plant protein, long coiled-coil
XP_057791569.1 Pfam PF05911 FPP Coiled-coil 482 632 1.1e-85 289.4 Filament-like plant protein, long coiled-coil
XP_057791570.1 Pfam PF05911 FPP Coiled-coil 92 202 1.1e-85 289.4 Filament-like plant protein, long coiled-coil
XP_057791570.1 Pfam PF05911 FPP Coiled-coil 206 274 1.1e-85 289.4 Filament-like plant protein, long coiled-coil
XP_057791570.1 Pfam PF05911 FPP Coiled-coil 482 632 1.1e-85 289.4 Filament-like plant protein, long coiled-coil
XP_057791571.1 Pfam PF05911 FPP Coiled-coil 92 202 1.1e-85 289.4 Filament-like plant protein, long coiled-coil
XP_057791571.1 Pfam PF05911 FPP Coiled-coil 206 274 1.1e-85 289.4 Filament-like plant protein, long coiled-coil
XP_057791571.1 Pfam PF05911 FPP Coiled-coil 482 632 1.1e-85 289.4 Filament-like plant protein, long coiled-coil
XP_057791572.1 Pfam PF05911 FPP Coiled-coil 92 202 1.1e-85 289.4 Filament-like plant protein, long coiled-coil
XP_057791572.1 Pfam PF05911 FPP Coiled-coil 206 274 1.1e-85 289.4 Filament-like plant protein, long coiled-coil
XP_057791572.1 Pfam PF05911 FPP Coiled-coil 482 632 1.1e-85 289.4 Filament-like plant protein, long coiled-coil
XP_057791573.1 Pfam PF05911 FPP Coiled-coil 92 202 1.1e-85 289.4 Filament-like plant protein, long coiled-coil
XP_057791573.1 Pfam PF05911 FPP Coiled-coil 206 274 1.1e-85 289.4 Filament-like plant protein, long coiled-coil
XP_057791573.1 Pfam PF05911 FPP Coiled-coil 482 632 1.1e-85 289.4 Filament-like plant protein, long coiled-coil
XP_057791574.1 Pfam PF05911 FPP Coiled-coil 92 202 1.1e-85 289.4 Filament-like plant protein, long coiled-coil
XP_057791574.1 Pfam PF05911 FPP Coiled-coil 206 274 1.1e-85 289.4 Filament-like plant protein, long coiled-coil
XP_057791574.1 Pfam PF05911 FPP Coiled-coil 482 632 1.1e-85 289.4 Filament-like plant protein, long coiled-coil
XP_057791575.1 Pfam PF05911 FPP Coiled-coil 92 202 1.1e-85 289.4 Filament-like plant protein, long coiled-coil
XP_057791575.1 Pfam PF05911 FPP Coiled-coil 206 274 1.1e-85 289.4 Filament-like plant protein, long coiled-coil
XP_057791575.1 Pfam PF05911 FPP Coiled-coil 482 632 1.1e-85 289.4 Filament-like plant protein, long coiled-coil

cDNA / CDS / Protein 序列

下载基因组 DNA（仅基因区域）

每个公开基因均提供参考注释对应的转录本序列；蛋白编码基因另提供 CDS 和蛋白序列。非编码 RNA 不适用 CDS 或蛋白下载。真实 accession 的版本后缀予以保留。

cDNA

7 records

下载 cDNA FASTA
XM_057935589.1
CATCCTTGAAAAATCTGATTTCTTCCCCTAATTTTTAACAGGCGCGCGAATATCGCAATCTTGATTTGAAAAAGAAAACAATTTTCCCCTTCCATAATTCAACCCTGTCTCCCTCTGCTACTTCCCACCTCCCGCAACAATCCAAAAACCCCATTAGAAAAAGGTTCTTGCAGAGGTATCCTACTCTCTCTCCAGAAAGTGAGTAATAAAGTTTTGATTAGGAAGAGTCGGGATGCTGTTGGAGGCCTTGTGTGTTTAGG...
XM_057935591.1
AAAAATCTGATTTCTTCCCCTAATTTTTAACAGGCGCGCGAATATCGCAATCTTGATTTGAAAAAGAAAACAATTTTCCCCTTCCATAATTCAACCCTGTCTCCCTCTGCTACTTCCCACCTCCCGCAACAATCCAAAAACCCCATTAGAAAAAGGAGTAATAAAGTTTTGATTAGGAAGAGTCGGGATGCTGTTGGAGGCCTTGTGTGTTTAGGATATTGAATGTGACTAATGTAAATATATTTAAGGTGACTGAATTC...

CDS

7 records

下载 CDS FASTA
LOC131008641
ATGGACAGGAGGAGTTGGCTGTGGCGGCGAAAATCTTCAGAAAAAAGTCCTAGCGGTGAAACAGAGAGCTCGGGGTCAGTGTCATCACACTCGGAAAGATTCTCCGATGATCAGACTCTGTCGAATCATAATATCCAATCCCCCGAAACTCTGTCGAATCATAATATCCAATCCCCCGAAGTAACATCTAAAGCTGCACCGGATGATGAACTAAATGATAATGTGAAGACTCTCTCAGAGAAACTTTCCGAAGCTCTTAT...
LOC131008641
ATGGACAGGAGGAGTTGGCTGTGGCGGCGAAAATCTTCAGAAAAAAGTCCTAGCGGTGAAACAGAGAGCTCGGGGTCAGTGTCATCACACTCGGAAAGATTCTCCGATGATCAGACTCTGTCGAATCATAATATCCAATCCCCCGAAACTCTGTCGAATCATAATATCCAATCCCCCGAAGTAACATCTAAAGCTGCACCGGATGATGAACTAAATGATAATGTGAAGACTCTCTCAGAGAAACTTTCCGAAGCTCTTAT...

Protein

7 records

下载 Protein FASTA
XP_057791569.1
MDRRSWLWRRKSSEKSPSGETESSGSVSSHSERFSDDQTLSNHNIQSPETLSNHNIQSPEVTSKAAPDDELNDNVKTLSEKLSEALINIGAKEDLVKQHAKVAEEAVSGWEKAESEVLVLKKQNDSLTQKNSILEERVGHLDGALKECLRQLRQAREDQEEKLYGAIANRSSEWESKKSELENQLSELHNQLRNAKSEANVLADVRSKLEAAEKENSILKLKLLSKEEELEQRISESDLSTYVAETASKQHLDSIKKVAK...
XP_057791570.1
MDRRSWLWRRKSSEKSPSGETESSGSVSSHSERFSDDQTLSNHNIQSPETLSNHNIQSPEVTSKAAPDDELNDNVKTLSEKLSEALINIGAKEDLVKQHAKVAEEAVSGWEKAESEVLVLKKQNDSLTQKNSILEERVGHLDGALKECLRQLRQAREDQEEKLYGAIANRSSEWESKKSELENQLSELHNQLRNAKSEANVLADVRSKLEAAEKENSILKLKLLSKEEELEQRISESDLSTYVAETASKQHLDSIKKVAK...

上下游序列下载

upstream/downstream 最大各 10000 bp。负链基因会自动反向互补，使最终 FASTA 为转录方向 5′→3′。

下载 upstream 下载 downstream 下载 upstream + gene + downstream

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