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中文 EN

Gene Card 基因详情

支持统一新 ID、NCBI Gene ID、GeneID、locus_tag、Transcript ID、Protein ID，以及已人工核对的文献基因名查询。页面会先解析到丹参统一基因，再整合坐标、序列、注释、亚细胞定位、EMS 突变和下载入口。
示例

当前解析结果

SmilChr02G004651

染色体: Chr02 坐标: 68939557-68951174 链方向: - 类型: protein_coding

基本信息

统一新 Gene IDSmilChr02G004651
名称SmilChr02G004651
描述ultraviolet-B receptor UVR8
染色体 / SeqIDChr02 / NC_080388.1
坐标与链方向68939557 - 68951174 / -

ID 对照

NCBI Gene IDLOC131008645
GeneID131008645
locus_tag-
NCBI NameLOC131008645
原始查询SmilChr02G004651

查看完整 ID 对照表

功能注释

来源GFF basic annotation; Pfam-A/HMMER; Arabidopsis/Rice homolog
描述ultraviolet-B receptor UVR8
产物ultraviolet-B receptor UVR8
ArabidopsisAT5G08710 (RUG1)
Regulator of chromosome condensation (RCC1) family protein [Source:NCBI gene (formerly Entrezgene);Acc:830771]
identity=56.3; qcov=0.969; evalue=3.89e-128; confidence=high
RiceOs11g0545800
-
identity=53.6; qcov=0.967; evalue=3.66e-132; confidence=high
GO-
KEGG-
PfamPF00415 (RCC1); PF13540 (RCC1_2); PF25390 (WD40_RLD)
InterPro-
eggNOG-
NRGeneID:131008645

打开注释模块

亚细胞定位 Top 5

Rank定位位置中文ScoreProtein ID
1 Mitochondrion 线粒体 1.00000 XP_057791577.1
2 Cytoplasm 细胞质 0.80000 XP_057791582.1
3 Nucleus 细胞核 0.60000 XP_057791582.1
4 Mitochondrion matrix 线粒体基质 0.20000 XP_057791577.1
5 Cytosol 细胞质基质 0.20000 XP_057791582.1

进入亚细胞定位查询

EMS 诱变突变

下表显示该基因在丹参 EMS 材料中的前 12 个候选突变；完整结果可进入 EMS 突变库继续筛选或下载。

位置 REF ALT 类型 影响 携带材料数 材料
Chr2:68939984 G A EMS_canonical_SNV CDS_variant 4 A10,B120,B77,C48
Chr2:68940072 C T EMS_canonical_SNV CDS_variant 2 C13,C41
Chr2:68943890 G A EMS_canonical_SNV CDS_variant 1 C79
Chr2:68944054 C T EMS_canonical_SNV CDS_variant 1 C64
Chr2:68947279 C T EMS_canonical_SNV CDS_variant 4 A11,A3,B107,C73
Chr2:68949244 G A EMS_canonical_SNV CDS_variant 2 A7,C3
Chr2:68949621 TG T 1bp_deletion frameshift_variant 1 A18
Chr2:68949621 TG T 1bp_deletion CDS_variant 1 A18
Chr2:68950946 C T EMS_canonical_SNV CDS_variant 1 D11

进入 EMS 突变库

预测功能结构域

结构域结果来自 Pfam-A HMM 数据库和 HMMER hmmscan；位置为对应蛋白序列上的氨基酸坐标。

XP_057791577.1
448 aa
N
1
224
448
WD40_RLD
RCC1
RCC1_2
RCC1
RCC1_2
RCC1
RCC1
RCC1_2
RCC1
RCC1
C
PF25390 WD40_RLD 55-441 aa PF00415 RCC1 57-102 aa PF13540 RCC1_2 90-118 aa PF00415 RCC1 165-216 aa PF13540 RCC1_2 203-231 aa PF00415 RCC1 219-277 aa PF00415 RCC1 280-327 aa PF13540 RCC1_2 317-343 aa PF00415 RCC1 331-380 aa PF00415 RCC1 406-441 aa
XP_057791578.1
447 aa
N
1
224
447
WD40_RLD
RCC1
RCC1_2
RCC1
RCC1_2
RCC1
RCC1
RCC1_2
RCC1
RCC1
C
PF25390 WD40_RLD 55-440 aa PF00415 RCC1 57-102 aa PF13540 RCC1_2 90-118 aa PF00415 RCC1 165-216 aa PF13540 RCC1_2 203-231 aa PF00415 RCC1 219-277 aa PF00415 RCC1 279-326 aa PF13540 RCC1_2 316-342 aa PF00415 RCC1 330-379 aa PF00415 RCC1 405-440 aa
XP_057791579.1
440 aa
N
1
220
440
WD40_RLD
RCC1
RCC1_2
RCC1
RCC1_2
RCC1
RCC1_2
RCC1
RCC1
RCC1_2
RCC1
RCC1
C
PF25390 WD40_RLD 55-433 aa PF00415 RCC1 57-102 aa PF13540 RCC1_2 90-118 aa PF00415 RCC1 105-154 aa PF13540 RCC1_2 141-170 aa PF00415 RCC1 157-208 aa PF13540 RCC1_2 195-223 aa PF00415 RCC1 211-269 aa PF00415 RCC1 272-319 aa PF13540 RCC1_2 309-335 aa PF00415 RCC1 323-372 aa PF00415 RCC1 398-433 aa
XP_057791581.1
439 aa
N
1
220
439
WD40_RLD
RCC1
RCC1_2
RCC1
RCC1_2
RCC1
RCC1_2
RCC1
RCC1
RCC1_2
RCC1
RCC1
C
PF25390 WD40_RLD 55-432 aa PF00415 RCC1 57-102 aa PF13540 RCC1_2 90-118 aa PF00415 RCC1 105-154 aa PF13540 RCC1_2 141-170 aa PF00415 RCC1 157-208 aa PF13540 RCC1_2 195-223 aa PF00415 RCC1 211-269 aa PF00415 RCC1 271-318 aa PF13540 RCC1_2 308-334 aa PF00415 RCC1 322-371 aa PF00415 RCC1 397-432 aa
XP_057791582.1
359 aa
N
1
180
359
WD40_RLD
RCC1
RCC1_2
RCC1
RCC1
RCC1_2
RCC1
RCC1
C
PF25390 WD40_RLD 74-352 aa PF00415 RCC1 76-127 aa PF13540 RCC1_2 114-142 aa PF00415 RCC1 130-188 aa PF00415 RCC1 191-238 aa PF13540 RCC1_2 228-254 aa PF00415 RCC1 242-291 aa PF00415 RCC1 317-352 aa
Protein ID 来源 结构域编号 结构域名称 类型 起始 aa 终止 aa E-value Score 说明
XP_057791577.1 Pfam PF25390 WD40_RLD Repeat 55 441 2.9e-79 267.7 RCC1-like domain
XP_057791577.1 Pfam PF00415 RCC1 Repeat 57 102 1.9e-66 221.1 Regulator of chromosome condensation (RCC1) repeat
XP_057791577.1 Pfam PF13540 RCC1_2 Repeat 90 118 2.6e-41 139.1 Regulator of chromosome condensation (RCC1) repeat
XP_057791577.1 Pfam PF00415 RCC1 Repeat 165 216 1.9e-66 221.1 Regulator of chromosome condensation (RCC1) repeat
XP_057791577.1 Pfam PF13540 RCC1_2 Repeat 203 231 2.6e-41 139.1 Regulator of chromosome condensation (RCC1) repeat
XP_057791577.1 Pfam PF00415 RCC1 Repeat 219 277 1.9e-66 221.1 Regulator of chromosome condensation (RCC1) repeat
XP_057791577.1 Pfam PF00415 RCC1 Repeat 280 327 1.9e-66 221.1 Regulator of chromosome condensation (RCC1) repeat
XP_057791577.1 Pfam PF13540 RCC1_2 Repeat 317 343 2.6e-41 139.1 Regulator of chromosome condensation (RCC1) repeat
XP_057791577.1 Pfam PF00415 RCC1 Repeat 331 380 1.9e-66 221.1 Regulator of chromosome condensation (RCC1) repeat
XP_057791577.1 Pfam PF00415 RCC1 Repeat 406 441 1.9e-66 221.1 Regulator of chromosome condensation (RCC1) repeat
XP_057791578.1 Pfam PF25390 WD40_RLD Repeat 55 440 4.2e-77 260.6 RCC1-like domain
XP_057791578.1 Pfam PF00415 RCC1 Repeat 57 102 1.9e-66 221.2 Regulator of chromosome condensation (RCC1) repeat
XP_057791578.1 Pfam PF13540 RCC1_2 Repeat 90 118 6.5e-36 121.9 Regulator of chromosome condensation (RCC1) repeat
XP_057791578.1 Pfam PF00415 RCC1 Repeat 165 216 1.9e-66 221.2 Regulator of chromosome condensation (RCC1) repeat
XP_057791578.1 Pfam PF13540 RCC1_2 Repeat 203 231 6.5e-36 121.9 Regulator of chromosome condensation (RCC1) repeat
XP_057791578.1 Pfam PF00415 RCC1 Repeat 219 277 1.9e-66 221.2 Regulator of chromosome condensation (RCC1) repeat
XP_057791578.1 Pfam PF00415 RCC1 Repeat 279 326 1.9e-66 221.2 Regulator of chromosome condensation (RCC1) repeat
XP_057791578.1 Pfam PF13540 RCC1_2 Repeat 316 342 6.5e-36 121.9 Regulator of chromosome condensation (RCC1) repeat
XP_057791578.1 Pfam PF00415 RCC1 Repeat 330 379 1.9e-66 221.2 Regulator of chromosome condensation (RCC1) repeat
XP_057791578.1 Pfam PF00415 RCC1 Repeat 405 440 1.9e-66 221.2 Regulator of chromosome condensation (RCC1) repeat
XP_057791579.1 Pfam PF25390 WD40_RLD Repeat 55 433 1.4e-88 298.4 RCC1-like domain
XP_057791579.1 Pfam PF00415 RCC1 Repeat 57 102 1.3e-75 250.5 Regulator of chromosome condensation (RCC1) repeat
XP_057791579.1 Pfam PF13540 RCC1_2 Repeat 90 118 1.7e-50 168.3 Regulator of chromosome condensation (RCC1) repeat
XP_057791579.1 Pfam PF00415 RCC1 Repeat 105 154 1.3e-75 250.5 Regulator of chromosome condensation (RCC1) repeat
XP_057791579.1 Pfam PF13540 RCC1_2 Repeat 141 170 1.7e-50 168.3 Regulator of chromosome condensation (RCC1) repeat
XP_057791579.1 Pfam PF00415 RCC1 Repeat 157 208 1.3e-75 250.5 Regulator of chromosome condensation (RCC1) repeat
XP_057791579.1 Pfam PF13540 RCC1_2 Repeat 195 223 1.7e-50 168.3 Regulator of chromosome condensation (RCC1) repeat
XP_057791579.1 Pfam PF00415 RCC1 Repeat 211 269 1.3e-75 250.5 Regulator of chromosome condensation (RCC1) repeat
XP_057791579.1 Pfam PF00415 RCC1 Repeat 272 319 1.3e-75 250.5 Regulator of chromosome condensation (RCC1) repeat
XP_057791579.1 Pfam PF13540 RCC1_2 Repeat 309 335 1.7e-50 168.3 Regulator of chromosome condensation (RCC1) repeat
XP_057791579.1 Pfam PF00415 RCC1 Repeat 323 372 1.3e-75 250.5 Regulator of chromosome condensation (RCC1) repeat
XP_057791579.1 Pfam PF00415 RCC1 Repeat 398 433 1.3e-75 250.5 Regulator of chromosome condensation (RCC1) repeat
XP_057791581.1 Pfam PF25390 WD40_RLD Repeat 55 432 2.1e-86 291.3 RCC1-like domain
XP_057791581.1 Pfam PF00415 RCC1 Repeat 57 102 1.3e-75 250.5 Regulator of chromosome condensation (RCC1) repeat
XP_057791581.1 Pfam PF13540 RCC1_2 Repeat 90 118 4.5e-45 151.1 Regulator of chromosome condensation (RCC1) repeat
XP_057791581.1 Pfam PF00415 RCC1 Repeat 105 154 1.3e-75 250.5 Regulator of chromosome condensation (RCC1) repeat
XP_057791581.1 Pfam PF13540 RCC1_2 Repeat 141 170 4.5e-45 151.1 Regulator of chromosome condensation (RCC1) repeat
XP_057791581.1 Pfam PF00415 RCC1 Repeat 157 208 1.3e-75 250.5 Regulator of chromosome condensation (RCC1) repeat
XP_057791581.1 Pfam PF13540 RCC1_2 Repeat 195 223 4.5e-45 151.1 Regulator of chromosome condensation (RCC1) repeat
XP_057791581.1 Pfam PF00415 RCC1 Repeat 211 269 1.3e-75 250.5 Regulator of chromosome condensation (RCC1) repeat
XP_057791581.1 Pfam PF00415 RCC1 Repeat 271 318 1.3e-75 250.5 Regulator of chromosome condensation (RCC1) repeat
XP_057791581.1 Pfam PF13540 RCC1_2 Repeat 308 334 4.5e-45 151.1 Regulator of chromosome condensation (RCC1) repeat
XP_057791581.1 Pfam PF00415 RCC1 Repeat 322 371 1.3e-75 250.5 Regulator of chromosome condensation (RCC1) repeat
XP_057791581.1 Pfam PF00415 RCC1 Repeat 397 432 1.3e-75 250.5 Regulator of chromosome condensation (RCC1) repeat
XP_057791582.1 Pfam PF25390 WD40_RLD Repeat 74 352 3.9e-86 290.4 RCC1-like domain
XP_057791582.1 Pfam PF00415 RCC1 Repeat 76 127 9.9e-58 193.2 Regulator of chromosome condensation (RCC1) repeat
XP_057791582.1 Pfam PF13540 RCC1_2 Repeat 114 142 6.8e-35 118.7 Regulator of chromosome condensation (RCC1) repeat
XP_057791582.1 Pfam PF00415 RCC1 Repeat 130 188 9.9e-58 193.2 Regulator of chromosome condensation (RCC1) repeat
XP_057791582.1 Pfam PF00415 RCC1 Repeat 191 238 9.9e-58 193.2 Regulator of chromosome condensation (RCC1) repeat
XP_057791582.1 Pfam PF13540 RCC1_2 Repeat 228 254 6.8e-35 118.7 Regulator of chromosome condensation (RCC1) repeat
XP_057791582.1 Pfam PF00415 RCC1 Repeat 242 291 9.9e-58 193.2 Regulator of chromosome condensation (RCC1) repeat
XP_057791582.1 Pfam PF00415 RCC1 Repeat 317 352 9.9e-58 193.2 Regulator of chromosome condensation (RCC1) repeat

cDNA / CDS / Protein 序列

下载基因组 DNA（仅基因区域）

每个公开基因均提供参考注释对应的转录本序列；蛋白编码基因另提供 CDS 和蛋白序列。非编码 RNA 不适用 CDS 或蛋白下载。真实 accession 的版本后缀予以保留。

cDNA

5 records

下载 cDNA FASTA
XM_057935596.1
ACATTCATGTTCATTAATTCGTGTATGATATAAAGTGAAGACACGAGGGTACATGAATGTTCACTTCTACGTTGCGCAATTTCAAGCCATCAATTCGATGACACTTCTTTATACTTGTAACCACCACCGAGAAATCGCCAGTTAAACCCTGGAATTGATATGAGCCCGGTTGGTTCTCCATTATTCAGGAACAATGAGGATGTCAAGAACTCATGCTTGCATGAGAAAGATCGCATCTTTATCAAATTTGGTGAACAAGA...
XM_057935598.1
TGTTCATTAATTCGTGTATGATATAAAGTGAAGACACGAGGGTACATGAATGTTCACTTCTACGTTGCGCAATTTCAAGCCATCAATTCGATGACACTTCTTTATACTTGTAACCACCACCGAGAAATCGCCAGTTAAACCCTGGAATTGATATGAGCCCGGTTGGTTCTCCATTATTCAGGAACAATGAGGATGTCAAGAACTCATGCTTGCATGAGAAAGATCGCATCTTTATCAAATTTGGTGAACAAGAAAGCCGG...

CDS

5 records

下载 CDS FASTA
LOC131008645
ATGAGGATGTCAAGAACTCATGCTTGCATGAGAAAGATCGCATCTTTATCAAATTTGGTGAACAAGAAAGCCGGGTTAGGCTCTGGCTCAAGATTGGTCTCTGCTGAAAGTGGGAGAAGCGATGATTTTGGTGAAGTATTGAGTAAAGGGAAGAGATTCGCAGCTGTTTGGGGCAATGGAGATTTTGGGAGATTGGGATTAGGCAATTTGAAGTCGCAGTGGAGGCCTAAGCCTATTTTGCCATCCGCTTTTGGTGATCA...
LOC131008645
ATGAGGATGTCAAGAACTCATGCTTGCATGAGAAAGATCGCATCTTTATCAAATTTGGTGAACAAGAAAGCCGGGTTAGGCTCTGGCTCAAGATTGGTCTCTGCTGAAAGTGGGAGAAGCGATGATTTTGGTGAAGTATTGAGTAAAGGGAAGAGATTCGCAGCTGTTTGGGGCAATGGAGATTTTGGGAGATTGGGATTAGGCAATTTGAAGTCGCAGTGGAGGCCTAAGCCTATTTTGCCATCCGCTTTTGGTGATCA...

Protein

5 records

下载 Protein FASTA
XP_057791577.1
MRMSRTHACMRKIASLSNLVNKKAGLGSGSRLVSAESGRSDDFGEVLSKGKRFAAVWGNGDFGRLGLGNLKSQWRPKPILPSAFGDQSLKEVASGGAHTLFLTENGDVYATGLNDFGQLGISETQDYSTNKELLTTLSSITRHAKLFLELGAILSKGLFVRCSEDGELYLWGKNANGQLGLGKKAQRIVPLPCKVQCLDGVAIRTISLGFEHSIAITDNGEALSWGGGESGRLGHGHESSILGFQKSSREYTPRLIKSLE...
XP_057791578.1
MRMSRTHACMRKIASLSNLVNKKAGLGSGSRLVSAESGRSDDFGEVLSKGKRFAAVWGNGDFGRLGLGNLKSQWRPKPILPSAFGDQSLKEVASGGAHTLFLTENGDVYATGLNDFGQLGISETQDYSTNKELLTTLSSITRHAKLFLELGAILSKGLFVRCSEDGELYLWGKNANGQLGLGKKAQRIVPLPCKVQCLDGVAIRTISLGFEHSIAITDNGEALSWGGGESGRLGHGHESSILGFQKSSREYTPRLIKSLE...

上下游序列下载

upstream/downstream 最大各 10000 bp。负链基因会自动反向互补，使最终 FASTA 为转录方向 5′→3′。

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