当前解析结果
SmilChr02G004654| 统一新 Gene ID | SmilChr02G004654 |
|---|---|
| 名称 | SmilChr02G004654 |
| 描述 | probable LRR receptor-like serine/threonine-protein kinase At5g63710 |
| 染色体 / SeqID | Chr02 / NC_080388.1 |
| 坐标与链方向 | 68964233 - 68967733 / + |
| NCBI Gene ID | LOC131008647 |
|---|---|
| GeneID | 131008647 |
| locus_tag | - |
| NCBI Name | LOC131008647 |
| 原始查询 | SmilChr02G004654 |
| 来源 | GFF basic annotation; NCBI GO GAF; Pfam-A/HMMER; Arabidopsis/Rice homolog |
|---|---|
| 描述 | probable LRR receptor-like serine/threonine-protein kinase At5g63710 |
| 产物 | probable LRR receptor-like serine/threonine-protein kinase At5g63710 |
| Arabidopsis | AT5G63710 (AT5G63710)Leucine-rich repeat protein kinase family protein [Source:NCBI gene (formerly Entrezgene);Acc:836491] identity=63.5; qcov=0.963; evalue=0; confidence=high |
| Rice | Os03g0703200 (TMS10L)- identity=56.2; qcov=0.972; evalue=0; confidence=high |
| GO | GO:0004672 (protein kinase activity); GO:0005515 (protein binding); GO:0005524 (ATP binding); GO:0006468 (protein phosphorylation) |
| KEGG | - |
| Pfam | PF00069 (Pkinase); PF00560 (LRR_1); PF07714 (PK_Tyr_Ser-Thr); PF08263 (LRRNT_2); PF13855 (LRR_8) |
| InterPro | - |
| eggNOG | - |
| NR | GeneID:131008647 |
| Rank | 定位位置 | 中文 | Score | Protein ID |
|---|---|---|---|---|
| 1 | Cell membrane | 细胞膜 | 1.00000 | XP_057791584.1 |
| 2 | Nucleus | 细胞核 | 0.00000 | XP_057791584.1 |
| 3 | Chromosome | 染色体 | 0.00000 | XP_057791584.1 |
| 4 | Centromere | 着丝粒 | 0.00000 | XP_057791584.1 |
| 5 | Chromatin | 染色质 | 0.00000 | XP_057791584.1 |
下表显示该基因在丹参 EMS 材料中的前 12 个候选突变；完整结果可进入 EMS 突变库继续筛选或下载。
| 位置 | REF | ALT | 类型 | 影响 | 携带材料数 | 材料 |
|---|---|---|---|---|---|---|
Chr2:68964898 |
C |
T |
EMS_canonical_SNV | CDS_variant | 1 | B107 |
Chr2:68964912 |
C |
T |
EMS_canonical_SNV | CDS_variant | 2 | A6,B21 |
Chr2:68964920 |
AG |
A |
1bp_deletion | frameshift_variant | 5 | B100,B118,B94,C70,D10 |
Chr2:68964920 |
AG |
A |
1bp_deletion | CDS_variant | 5 | B100,B118,B94,C70,D10 |
Chr2:68965096 |
G |
A |
EMS_canonical_SNV | CDS_variant | 1 | C79 |
Chr2:68965121 |
AG |
A |
1bp_deletion | frameshift_variant | 2 | B94,C30 |
Chr2:68965121 |
AG |
A |
1bp_deletion | CDS_variant | 2 | B94,C30 |
Chr2:68965585 |
C |
T |
EMS_canonical_SNV | stop_gained | 1 | C79 |
Chr2:68965585 |
C |
T |
EMS_canonical_SNV | CDS_variant | 1 | C79 |
Chr2:68965995 |
C |
T |
EMS_canonical_SNV | CDS_variant | 1 | B35 |
Chr2:68966031 |
G |
GCA |
2bp_insertion | frameshift_variant | 26 | A19,B105,B107,B11,B117,B12,B123,B134,B30,B36,B42,B43,B47,B50,B76,C30,C34,C36,C40,C56,C61,C65,C7,C73,C9,D9 |
Chr2:68966032 |
GGA |
G |
2bp_deletion | frameshift_variant | 26 | A19,B105,B107,B11,B117,B12,B123,B134,B30,B36,B42,B43,B47,B50,B76,C30,C34,C36,C40,C56,C61,C65,C7,C73,C9,D9 |
结构域结果来自 Pfam-A HMM 数据库和 HMMER hmmscan；位置为对应蛋白序列上的氨基酸坐标。
XP_057791584.1PF08263
LRRNT_2 33-72 aa
PF00560
LRR_1 101-122 aa
PF13855
LRR_8 101-159 aa
PF00560
LRR_1 125-145 aa
PF00560
LRR_1 149-169 aa
PF00069
Pkinase 303-573 aa
PF07714
PK_Tyr_Ser-Thr 306-575 aa
XP_057791585.1PF08263
LRRNT_2 33-72 aa
PF00560
LRR_1 101-122 aa
PF00560
LRR_1 125-145 aa
PF00560
LRR_1 149-169 aa
PF00069
Pkinase 296-566 aa
PF07714
PK_Tyr_Ser-Thr 299-568 aa
| Protein ID | 来源 | 结构域编号 | 结构域名称 | 类型 | 起始 aa | 终止 aa | E-value | Score | 说明 |
|---|---|---|---|---|---|---|---|---|---|
XP_057791584.1 |
Pfam | PF08263 |
LRRNT_2 | Family | 33 | 72 | 8.1e-07 | 29.9 | Leucine rich repeat N-terminal domain |
XP_057791584.1 |
Pfam | PF00560 |
LRR_1 | Repeat | 101 | 122 | 1.5e-13 | 48.7 | Leucine Rich Repeat |
XP_057791584.1 |
Pfam | PF13855 |
LRR_8 | Repeat | 101 | 159 | 3.8e-12 | 46.5 | Leucine rich repeat |
XP_057791584.1 |
Pfam | PF00560 |
LRR_1 | Repeat | 125 | 145 | 1.5e-13 | 48.7 | Leucine Rich Repeat |
XP_057791584.1 |
Pfam | PF00560 |
LRR_1 | Repeat | 149 | 169 | 1.5e-13 | 48.7 | Leucine Rich Repeat |
XP_057791584.1 |
Pfam | PF00069 |
Pkinase | Domain | 303 | 573 | 2.3e-40 | 139.3 | Protein kinase domain |
XP_057791584.1 |
Pfam | PF07714 |
PK_Tyr_Ser-Thr | Domain | 306 | 575 | 4.1e-40 | 138.4 | Protein tyrosine and serine/threonine kinase |
XP_057791585.1 |
Pfam | PF08263 |
LRRNT_2 | Family | 33 | 72 | 8.2e-07 | 29.9 | Leucine rich repeat N-terminal domain |
XP_057791585.1 |
Pfam | PF00560 |
LRR_1 | Repeat | 101 | 122 | 6.3e-15 | 52.8 | Leucine Rich Repeat |
XP_057791585.1 |
Pfam | PF00560 |
LRR_1 | Repeat | 125 | 145 | 6.3e-15 | 52.8 | Leucine Rich Repeat |
XP_057791585.1 |
Pfam | PF00560 |
LRR_1 | Repeat | 149 | 169 | 6.3e-15 | 52.8 | Leucine Rich Repeat |
XP_057791585.1 |
Pfam | PF00069 |
Pkinase | Domain | 296 | 566 | 2.3e-40 | 139.4 | Protein kinase domain |
XP_057791585.1 |
Pfam | PF07714 |
PK_Tyr_Ser-Thr | Domain | 299 | 568 | 4e-40 | 138.5 | Protein tyrosine and serine/threonine kinase |
每个公开基因均提供参考注释对应的转录本序列；蛋白编码基因另提供 CDS 和蛋白序列。非编码 RNA 不适用 CDS 或蛋白下载。真实 accession 的版本后缀予以保留。
2 records
下载 cDNA FASTA2 records
下载 CDS FASTA2 records
下载 Protein FASTAupstream/downstream 最大各 10000 bp。负链基因会自动反向互补，使最终 FASTA 为转录方向 5′→3′。