Gene Card 基因详情

支持统一新 ID、NCBI Gene ID、GeneID、locus_tag、Transcript ID、Protein ID，以及已人工核对的文献基因名查询。页面会先解析到丹参统一基因，再整合坐标、序列、注释、亚细胞定位、EMS 突变和下载入口。

当前解析结果

`SmilChr02G004686`

染色体: Chr02 坐标: 69170025-69179013 链方向: - 类型: protein_coding

基本信息

统一新 Gene ID	`SmilChr02G004686`
名称	SmilChr02G004686
描述	uncharacterized SmilChr02G004686
染色体 / SeqID	Chr02 / NC_080388.1
坐标与链方向	69170025 - 69179013 / `-`

ID 对照

NCBI Gene ID	`LOC131008706`
GeneID	`131008706`
locus_tag	`-`
NCBI Name	`LOC131008706`
原始查询	`SmilChr02G004686`

查看完整 ID 对照表

功能注释

来源	GFF basic annotation; NCBI GO GAF; Pfam-A/HMMER; Arabidopsis/Rice homolog
描述	AAR2 protein family [Source:NCBI gene (formerly Entrezgene);Acc:842969]; symbol=AT1G66510; hit=AT1G66510; species=arabidopsis; confidence=high
产物	AAR2 protein family [Source:NCBI gene (formerly Entrezgene);Acc:842969]; symbol=AT1G66510; hit=AT1G66510; species=arabidopsis; confidence=high
Arabidopsis	`AT1G66510` (AT1G66510) AAR2 protein family [Source:NCBI gene (formerly Entrezgene);Acc:842969] identity=63.2; qcov=1; evalue=2.31e-162; confidence=high
Rice	`Os04g0132300` - identity=58.6; qcov=0.977; evalue=6.7e-147; confidence=high
GO	GO:0000244 (spliceosomal tri-snRNP complex assembly)
KEGG	-
Pfam	PF05282 (AAR2); PF20981 (AAR2_1st)
InterPro	-
eggNOG	-
NR	GeneID:131008706

打开注释模块

亚细胞定位 Top 5

Rank	定位位置	中文	Score	Protein ID
1	Cytoplasm	细胞质	1.00000	`XP_057791701.1`
2	Cytosol	细胞质基质	1.00000	`XP_057791701.1`
3	Nucleus	细胞核	0.40000	`XP_057791701.1`
4	Nucleoplasm	核质	0.20000	`XP_057791701.1`
5	Chromosome	染色体	0.00000	`XP_057791701.1`

进入亚细胞定位查询

EMS 诱变突变

下表显示该基因在丹参 EMS 材料中的前 12 个候选突变；完整结果可进入 EMS 突变库继续筛选或下载。

位置	REF	ALT	类型	影响	携带材料数	材料
`Chr2:69170390`	`G`	`A`	EMS_canonical_SNV	CDS_variant	4	B71,C57,C62,D5
`Chr2:69170444`	`G`	`A`	EMS_canonical_SNV	CDS_variant	2	C58,C60
`Chr2:69172530`	`G`	`A`	EMS_canonical_SNV	CDS_variant	5	B131,B2,B27,B44,C39
`Chr2:69173167`	`G`	`A`	EMS_canonical_SNV	CDS_variant	3	B104,B78,C37
`Chr2:69173439`	`G`	`A`	EMS_canonical_SNV	CDS_variant	4	B110,B37,C58,C60
`Chr2:69173455`	`TC`	`T`	1bp_deletion	frameshift_variant	1	A14
`Chr2:69173455`	`TC`	`T`	1bp_deletion	CDS_variant	1	A14
`Chr2:69174197`	`G`	`A`	EMS_canonical_SNV	CDS_variant	2	A4,B85
`Chr2:69175876`	`C`	`T`	EMS_canonical_SNV	CDS_variant	1	C37
`Chr2:69176073`	`C`	`T`	EMS_canonical_SNV	CDS_variant	3	A14,B78,C43

进入 EMS 突变库

预测功能结构域

结构域结果来自 Pfam-A HMM 数据库和 HMMER hmmscan；位置为对应蛋白序列上的氨基酸坐标。

XP_057791701.1

389 aa

194

389

AAR2_1st

AAR2

PF20981 AAR2_1st 13-144 aa PF05282 AAR2 189-362 aa

XP_057791702.1

351 aa

176

351

AAR2_1st

AAR2

PF20981 AAR2_1st 13-144 aa PF05282 AAR2 189-344 aa

Protein ID	来源	结构域编号	结构域名称	类型	起始 aa	终止 aa	E-value	Score	说明
`XP_057791701.1`	Pfam	`PF20981`	AAR2_1st	Domain	13	144	3.1e-45	154.3	AAR2 N-terminal domain
`XP_057791701.1`	Pfam	`PF05282`	AAR2	Repeat	189	362	1.1e-39	136.7	AAR2 C-terminal repeat region
`XP_057791702.1`	Pfam	`PF20981`	AAR2_1st	Domain	13	144	2.5e-45	154.7	AAR2 N-terminal domain
`XP_057791702.1`	Pfam	`PF05282`	AAR2	Repeat	189	344	2.5e-34	119.3	AAR2 C-terminal repeat region

cDNA / CDS / Protein 序列

下载基因组 DNA（仅基因区域）

每个公开基因均提供参考注释对应的转录本序列；蛋白编码基因另提供 CDS 和蛋白序列。非编码 RNA 不适用 CDS 或蛋白下载。真实 accession 的版本后缀予以保留。

cDNA

3 records

下载 cDNA FASTA

XR_009096324.1
TAATAATTGTGCCATATTTTTTGGGGGACGGATAGAGTAGCTTCTTTTGTGCTAGATTAATCCCTCCCCGTCAAGGTATCACACTAACCTGGTCTTCTGATCCCTCGCCGTCGCCGTCTGCTTGAAATCGGTGGCAAGGTTCGATTAATACTGCAGCCTGCAGCCTCCGCCGGATTTCAAAGCCACCATCACAATCGCCGGATTCGCCCTCGCCTCGTCTGCCACCGTCGACGAAGCCCTACTCCGCCCCTCTCCGGTCA...

XM_057935718.1
TAATAATTGTGCCATATTTTTTGGGGGACGGATAGAGTAGCTTCTTTTGTGCTAGATTAATCCCTCCCCGTCAAGGTATCACACTAACCTGGTCTTCTGATCCCTCGCCGTCGCCGTCTGCTTGAAATCGGTGGCAAGGTTCGATTAATACTGCAGCCTGCAGCCTCCGCCGGATTTCAAAGCCACCATCACAATCGCCGGATTCGCCCTCGCCTCGTCTGCCACCGTCGACGAAGCCCTACTCCGCCCCTCTCCGGTCA...

CDS

2 records

下载 CDS FASTA

LOC131008706
ATGGAGGCAGAGAAGGCTTTAGAATTAGTGAAGAAAGGCGCCACTCTTCTTGCGCTCGACGTTCCTCCGTACACTCTATTTGGTATTGATACCCAGATTTTTTCGGCAGGTCCTAACTTTAAGGGTATCAAGATGATTCCTCCCGGTATTCACTATATATACTATAGCTCTTCTAACAGGGAAGGCAGTGAGTTTTCTCCAATAATTGGTTTCTTCATCGATGCAAGCTCATCACAGGTGATTGTTCGGAGATGGGATCA...

Protein

2 records

下载 Protein FASTA

XP_057791701.1
MEAEKALELVKKGATLLALDVPPYTLFGIDTQIFSAGPNFKGIKMIPPGIHYIYYSSSNREGSEFSPIIGFFIDASSSQVIVRRWDQKEERLVKVLEEEEDRYSDAVKRLEFDNQLGPYSLSQYGDWKHLSNFITKDTVDRLEPIGGDITIACESEMFSGTSMEKSLAEQLKNKFSARKEKSQTQGCYYTTIPRVVKQKGVYGEDITSLNLDKTHLLETILMKEYGGDEDALLAELQFAFIAFLMGQSLQAFLQWKLLVS...

XP_057791702.1
MEAEKALELVKKGATLLALDVPPYTLFGIDTQIFSAGPNFKGIKMIPPGIHYIYYSSSNREGSEFSPIIGFFIDASSSQVIVRRWDQKEERLVKVLEEEEDRYSDAVKRLEFDNQLGPYSLSQYGDWKHLSNFITKDTVDRLEPIGGDITIACESEMFSGTSMEKSLAEQLKNKFSARKEKSQTQGCYYTTIPRVVKQKGVYGEDITSLNLDKTHLLETILMKEYGGDEDALLAELQFAFIAFLMGQSLQAFLQWKLLVS...

上下游序列下载

upstream/downstream 最大各 10000 bp。负链基因会自动反向互补，使最终 FASTA 为转录方向 5′→3′。

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JBrowse

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