Gene Card 基因详情

支持统一新 ID、NCBI Gene ID、GeneID、locus_tag、Transcript ID、Protein ID，以及已人工核对的文献基因名查询。页面会先解析到丹参统一基因，再整合坐标、序列、注释、亚细胞定位、EMS 突变和下载入口。

当前解析结果

`SmilChr02G004693`

染色体: Chr02 坐标: 69277430-69280513 链方向: + 类型: protein_coding

基本信息

统一新 Gene ID	`SmilChr02G004693`
名称	SmilChr02G004693
描述	uncharacterized SmilChr02G004693
染色体 / SeqID	Chr02 / NC_080388.1
坐标与链方向	69277430 - 69280513 / `+`

ID 对照

NCBI Gene ID	`LOC131008723`
GeneID	`131008723`
locus_tag	`-`
NCBI Name	`LOC131008723`
原始查询	`SmilChr02G004693`

查看完整 ID 对照表

功能注释

来源	GFF basic annotation; Pfam-A/HMMER; Arabidopsis/Rice homolog
描述	plant viral-response family protein (DUF716) [Source:NCBI gene (formerly Entrezgene);Acc:831236]; symbol=AT5G13890; hit=AT5G13890; species=arabidopsis; confidence=high
产物	plant viral-response family protein (DUF716) [Source:NCBI gene (formerly Entrezgene);Acc:831236]; symbol=AT5G13890; hit=AT5G13890; species=arabidopsis; confidence=high
Arabidopsis	`AT5G13890` (AT5G13890) plant viral-response family protein (DUF716) [Source:NCBI gene (formerly Entrezgene);Acc:831236] identity=59.5; qcov=1.01; evalue=1.83e-104; confidence=high
Rice	`Os11g0534100` - identity=32.6; qcov=0.456; evalue=1.84e-14; confidence=low
GO	-
KEGG	-
Pfam	PF04819 (DUF716)
InterPro	-
eggNOG	-
NR	GeneID:131008723

打开注释模块

亚细胞定位 Top 5

Rank	定位位置	中文	Score	Protein ID
1	Cell membrane	细胞膜	0.80000	`XP_057791725.1`
2	Vacuole	液泡	0.60000	`XP_057791725.1`
3	Vacuole membrane	液泡膜	0.60000	`XP_057791725.1`
4	Endoplasmic reticulum	内质网	0.20000	`XP_057791725.1`
5	Nucleus	细胞核	0.00000	`XP_057791725.1`

进入亚细胞定位查询

EMS 诱变突变

下表显示该基因在丹参 EMS 材料中的前 12 个候选突变；完整结果可进入 EMS 突变库继续筛选或下载。

位置	REF	ALT	类型	影响	携带材料数	材料
`Chr2:69277993`	`C`	`T`	EMS_canonical_SNV	CDS_variant	4	B20,B35,B79,D3
`Chr2:69278000`	`G`	`A`	EMS_canonical_SNV	CDS_variant	3	A3,C63,D7
`Chr2:69278001`	`G`	`A`	EMS_canonical_SNV	CDS_variant	2	A3,B78
`Chr2:69278003`	`G`	`A`	EMS_canonical_SNV	stop_gained	9	A2,B110,B37,B38,B39,B55,B82,C20,C23
`Chr2:69278011`	`C`	`T`	EMS_canonical_SNV	CDS_variant	1	A3
`Chr2:69278012`	`TGC`	`T`	2bp_deletion	frameshift_variant	10	A2,B110,B37,B38,B39,B55,B70,B82,C20,C23
`Chr2:69278019`	`C`	`T`	EMS_canonical_SNV	CDS_variant	4	B20,B35,B79,D3
`Chr2:69278031`	`C`	`T`	EMS_canonical_SNV	CDS_variant	4	B20,B35,B79,D3
`Chr2:69278042`	`TCA`	`T`	2bp_deletion	frameshift_variant	5	B11,B29,B30,B62,C55
`Chr2:69278042`	`TCA`	`T`	2bp_deletion	CDS_variant	5	B11,B29,B30,B62,C55
`Chr2:69278061`	`G`	`A`	EMS_canonical_SNV	CDS_variant	1	D10
`Chr2:69278077`	`G`	`A`	EMS_canonical_SNV	CDS_variant	3	B133,C11,C60

进入 EMS 突变库

预测功能结构域

结构域结果来自 Pfam-A HMM 数据库和 HMMER hmmscan；位置为对应蛋白序列上的氨基酸坐标。

XP_057791725.1

309 aa

154

309

DUF716

PF04819 DUF716 131-270 aa

XP_057791726.1

309 aa

154

309

DUF716

PF04819 DUF716 131-270 aa

Protein ID	来源	结构域编号	结构域名称	类型	起始 aa	终止 aa	E-value	Score	说明
`XP_057791725.1`	Pfam	`PF04819`	DUF716	Family	131	270	1.4e-31	109.6	Family of unknown function (DUF716)
`XP_057791726.1`	Pfam	`PF04819`	DUF716	Family	131	270	1.4e-31	109.6	Family of unknown function (DUF716)

cDNA / CDS / Protein 序列

下载基因组 DNA（仅基因区域）

每个公开基因均提供参考注释对应的转录本序列；蛋白编码基因另提供 CDS 和蛋白序列。非编码 RNA 不适用 CDS 或蛋白下载。真实 accession 的版本后缀予以保留。

cDNA

2 records

下载 cDNA FASTA

XM_057935742.1
AAAAAGTAAAAGTATAGGGATTTGAAGATGTATTTTGTCTAATTAAAAATGAAAAGTTGAACATGAATGAGGTATTTATGTGGGACATCAAAATTGTACAGGAGATCTCAAGTGATGTTATACAGTGTCACTATTTAATTTTTTGTTCTATTTTAGAAAAAATATTTTTTGGCCCTTTTCTTTTTTCAAAAAATTCATATACAGAGTGAGAGTTCATCACTTGTTTAAGAAAATAGCAATAGGGTTTTAACATAAAATAC...

XM_057935743.1
TGTTCTATTTTAGAAAAAATATTTTTTGGCCCTTTTCTTTTTTCAAAAAATTCATATACAGAGTGAGAGTTCATCACTTGTTTAAGAAAATAGCAATAGGGTTTTAACATAAAATACAAATTAATTCTCAAGTATTCAAAGTCACCGCTACACCTAAATCTCAATGACGCGATTCTAGTAGATGAACATATCCGCCATTTTTGTTCGATTAATTTGCGTCATCAGCTGCAGCAAATCTTGAATAGGGTTGTGGAAATGGC...

CDS

2 records

下载 CDS FASTA

LOC131008723
ATGGCAGCCCTAATCTACCAGATCTTCTCATCGGCGGCGCTGCTGGCGCAGGGGTTCTACCACCTCATCTCCGCCACCAGAAACCACCTCAAATTCCCCGCCGATTACGTCGCCAAACCCTACCATCCCCTCCCCTTCACCGCCGCCGCCGCCGCCCACCACCACCACCACCGGTGGCGGCATCTGCAGCTCTACCTCATCATCCTCTGCCTCATCATCGCAATCATCCACCAGCTCATCGTCTCCTCCGACGCCGATCC...

Protein

2 records

下载 Protein FASTA

XP_057791725.1
MAALIYQIFSSAALLAQGFYHLISATRNHLKFPADYVAKPYHPLPFTAAAAAHHHHHRWRHLQLYLIILCLIIAIIHQLIVSSDADPLVKGRTAVYLFTSLQSAALLFAFLLLALALLLSDATSLLPLPLDLFFAVASTLFFLDYSLLSSSAAVQTSDLQAKCTSTSAGISALSSALCLALACQPKLFVADAALGASFCLQGLWALQTGLSLYVDAFIPEGCHKLLDVVSGVDGSTKCDLDDSKLRAVAILDLIFVLHVV...

XP_057791726.1
MAALIYQIFSSAALLAQGFYHLISATRNHLKFPADYVAKPYHPLPFTAAAAAHHHHHRWRHLQLYLIILCLIIAIIHQLIVSSDADPLVKGRTAVYLFTSLQSAALLFAFLLLALALLLSDATSLLPLPLDLFFAVASTLFFLDYSLLSSSAAVQTSDLQAKCTSTSAGISALSSALCLALACQPKLFVADAALGASFCLQGLWALQTGLSLYVDAFIPEGCHKLLDVVSGVDGSTKCDLDDSKLRAVAILDLIFVLHVV...

上下游序列下载

upstream/downstream 最大各 10000 bp。负链基因会自动反向互补，使最终 FASTA 为转录方向 5′→3′。

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