Gene Card 基因详情

支持统一新 ID、NCBI Gene ID、GeneID、locus_tag、Transcript ID、Protein ID，以及已人工核对的文献基因名查询。页面会先解析到丹参统一基因，再整合坐标、序列、注释、亚细胞定位、EMS 突变和下载入口。

当前解析结果

`SmilChr02G004694`

染色体: Chr02 坐标: 69287809-69295931 链方向: + 类型: protein_coding

基本信息

统一新 Gene ID	`SmilChr02G004694`
名称	SmilChr02G004694
描述	lysine histidine transporter 1-like
染色体 / SeqID	Chr02 / NC_080388.1
坐标与链方向	69287809 - 69295931 / `+`

ID 对照

NCBI Gene ID	`LOC131008698`
GeneID	`131008698`
locus_tag	`-`
NCBI Name	`LOC131008698`
原始查询	`SmilChr02G004694`

查看完整 ID 对照表

功能注释

来源	GFF basic annotation; NCBI GO GAF; Pfam-A/HMMER; Arabidopsis/Rice homolog
描述	lysine histidine transporter 1-like
产物	lysine histidine transporter 1-like
Arabidopsis	`AT5G40780` (LHT1) lysine histidine transporter 1 [Source:NCBI gene (formerly Entrezgene);Acc:834078] identity=68.2; qcov=0.984; evalue=0; confidence=high
Rice	`Os08g0127100` (OsHT) - identity=75.1; qcov=0.964; evalue=0; confidence=high
GO	GO:0005886 (plasma membrane)
KEGG	-
Pfam	PF01490 (Aa_trans); PF03222 (Trp_Tyr_perm)
InterPro	-
eggNOG	-
NR	GeneID:131008698

打开注释模块

亚细胞定位 Top 5

Rank	定位位置	中文	Score	Protein ID
1	Cell membrane	细胞膜	1.00000	`XP_057791691.1`
2	Nucleus	细胞核	0.00000	`XP_057791691.1`
3	Chromosome	染色体	0.00000	`XP_057791691.1`
4	Centromere	着丝粒	0.00000	`XP_057791691.1`
5	Chromatin	染色质	0.00000	`XP_057791691.1`

进入亚细胞定位查询

EMS 诱变突变

下表显示该基因在丹参 EMS 材料中的前 12 个候选突变；完整结果可进入 EMS 突变库继续筛选或下载。

位置	REF	ALT	类型	影响	携带材料数	材料
`Chr2:69288500`	`C`	`T`	EMS_canonical_SNV	CDS_variant	1	C86
`Chr2:69288558`	`C`	`T`	EMS_canonical_SNV	CDS_variant	2	C45,D7
`Chr2:69288601`	`G`	`A`	EMS_canonical_SNV	CDS_variant	1	B109
`Chr2:69288739`	`G`	`A`	EMS_canonical_SNV	CDS_variant	1	B42
`Chr2:69288742`	`G`	`A`	EMS_canonical_SNV	CDS_variant	2	B108,C78
`Chr2:69288862`	`G`	`A`	EMS_canonical_SNV	CDS_variant	1	D10
`Chr2:69288902`	`T`	`TA`	1bp_insertion	frameshift_variant	8	A23,A9,B17,B25,B46,B75,C57,C84
`Chr2:69288909`	`G`	`GGA`	2bp_insertion	frameshift_variant	10	A23,A9,B117,B17,B25,B46,B75,C16,C57,C84
`Chr2:69288916`	`G`	`A`	EMS_canonical_SNV	CDS_variant	4	B108,B109,B33,C78
`Chr2:69288935`	`T`	`TCG`	2bp_insertion	frameshift_variant	17	A1,A9,B117,B17,B25,B29,B46,B52,B64,B73,B75,C11,C16,C22,C57,C79,C84
`Chr2:69288937`	`A`	`AGG`	2bp_insertion	frameshift_variant	17	A1,A9,B117,B17,B25,B29,B46,B52,B64,B73,B75,C11,C16,C22,C57,C79,C84
`Chr2:69288988`	`A`	`AAC`	2bp_insertion	frameshift_variant	12	A1,B117,B12,B126,B17,B29,B52,B64,B73,C11,C16,C30

进入 EMS 突变库

预测功能结构域

结构域结果来自 Pfam-A HMM 数据库和 HMMER hmmscan；位置为对应蛋白序列上的氨基酸坐标。

XP_057791691.1

450 aa

225

450

Aa_trans

Trp_Tyr_perm

PF01490 Aa_trans 39-434 aa PF03222 Trp_Tyr_perm 51-279 aa

XP_057791692.1

450 aa

225

450

Aa_trans

Trp_Tyr_perm

PF01490 Aa_trans 39-434 aa PF03222 Trp_Tyr_perm 51-279 aa

Protein ID	来源	结构域编号	结构域名称	类型	起始 aa	终止 aa	E-value	Score	说明
`XP_057791691.1`	Pfam	`PF01490`	Aa_trans	Domain	39	434	1.4e-104	350.7	Transmembrane amino acid transporter protein
`XP_057791691.1`	Pfam	`PF03222`	Trp_Tyr_perm	Family	51	279	8.4e-06	25.9	Tryptophan/tyrosine permease family
`XP_057791692.1`	Pfam	`PF01490`	Aa_trans	Domain	39	434	1.4e-104	350.7	Transmembrane amino acid transporter protein
`XP_057791692.1`	Pfam	`PF03222`	Trp_Tyr_perm	Family	51	279	8.4e-06	25.9	Tryptophan/tyrosine permease family

cDNA / CDS / Protein 序列

下载基因组 DNA（仅基因区域）

每个公开基因均提供参考注释对应的转录本序列；蛋白编码基因另提供 CDS 和蛋白序列。非编码 RNA 不适用 CDS 或蛋白下载。真实 accession 的版本后缀予以保留。

cDNA

2 records

下载 cDNA FASTA

XM_057935709.1
TAGTATTCTTGTTTAGACTCTCTTATCAATTAATATGAATTTCTGTAACCACCCAAATGAGTAATTAAATACTATACATATATAGGATACTTAGCTAAACTGTGAGTAATGAACTTTGTCACATTCTGCTCATTCTCATCCTATAATACCAAGTTTTGAATATCATATGTGCTTTGAGTAGATTCTTGAATTTTTTCCTTCACTTCATCTCTTTTCAGCTTCTTCAATCTTCATGCCCTCCTAATATTTGGGAATTTAAG...

XM_057935708.1
TAGTATTCTTGTTTAGACTCTCTTATCAATTAATATGAATTTCTGTAACCACCCAAATGAGTAATTAAATACTATACATATATAGGATACTTAGCTAAACTGTGAGTAATGAACTTTGTCACATTCTGCTCATTCTCATCCTATAATACCAAGTTTTGAATATCATATGTGCTTTGAGTAGATTCTTGAATTTTTTCCTTCACTTCATCTCTTTTCAGCTTCTTCAATCTTCATGCCCTCCTAATATTTGGGAATTTAAG...

CDS

2 records

下载 CDS FASTA

LOC131008698
ATGGAAACTGAAATTCCAAGTTATGACAGGAAAAAGTACAATAATGCTAATGTAGAGGAGAGGTCTGCAGAGGAGAGAGCCATAGATGATTGGCTTCCAATCACTGCTTCAAGAAAAGCAAGATGGTGGTTCTCAACTCTTCACAATGTCACTGCTATAGTCGGAGCCGGAGTCCTCAGCCTCCCTTATGCCATGTCCGAGCTCGGATGGGGGGCTGGAGTGGCAGCCTTGGTGATATCTTGGATGATCACTCTCTACAC...

Protein

2 records

下载 Protein FASTA

XP_057791691.1
METEIPSYDRKKYNNANVEERSAEERAIDDWLPITASRKARWWFSTLHNVTAIVGAGVLSLPYAMSELGWGAGVAALVISWMITLYTLLQMAQMHEMVPGKRFDRYHELGQHAFGDKLGLWIVLPQQLMCLVAVDIVYMITGGQSLKKFHDLVCKDCKHIKLTYFIMIISSAHFVLSQLPSFNSISGVSLAAAVMSISYSTIAWGASIEKGVQPNVHYGHRSKTTAGAVFDFFSALGTVAFAYSGHNVVMEIQASLPSTP...

XP_057791692.1
METEIPSYDRKKYNNANVEERSAEERAIDDWLPITASRKARWWFSTLHNVTAIVGAGVLSLPYAMSELGWGAGVAALVISWMITLYTLLQMAQMHEMVPGKRFDRYHELGQHAFGDKLGLWIVLPQQLMCLVAVDIVYMITGGQSLKKFHDLVCKDCKHIKLTYFIMIISSAHFVLSQLPSFNSISGVSLAAAVMSISYSTIAWGASIEKGVQPNVHYGHRSKTTAGAVFDFFSALGTVAFAYSGHNVVMEIQASLPSTP...

上下游序列下载

upstream/downstream 最大各 10000 bp。负链基因会自动反向互补，使最终 FASTA 为转录方向 5′→3′。

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