Gene Card 基因详情

支持统一新 ID、NCBI Gene ID、GeneID、locus_tag、Transcript ID、Protein ID，以及已人工核对的文献基因名查询。页面会先解析到丹参统一基因，再整合坐标、序列、注释、亚细胞定位、EMS 突变和下载入口。

当前解析结果

`SmilChr02G004708`

染色体: Chr02 坐标: 69357387-69360658 链方向: - 类型: protein_coding

基本信息

统一新 Gene ID	`SmilChr02G004708`
名称	SmilChr02G004708
描述	succinate dehydrogenase [ubiquinone] iron-sulfur subunit 2, mitochondrial
染色体 / SeqID	Chr02 / NC_080388.1
坐标与链方向	69357387 - 69360658 / `-`

ID 对照

NCBI Gene ID	`LOC131008730`
GeneID	`131008730`
locus_tag	`-`
NCBI Name	`LOC131008730`
原始查询	`SmilChr02G004708`

查看完整 ID 对照表

功能注释

来源	GFF basic annotation; NCBI GO GAF; KEGG smil; Pfam-A/HMMER; Arabidopsis/Rice homolog
描述	succinate dehydrogenase [ubiquinone] iron-sulfur subunit 2, mitochondrial
产物	succinate dehydrogenase [ubiquinone] iron-sulfur subunit 2%2C mitochondrial
Arabidopsis	`AT5G40650` (SDH2-2) succinate dehydrogenase 2-2 [Source:NCBI gene (formerly Entrezgene);Acc:834065] identity=75.4; qcov=1.01; evalue=4.1e-157; confidence=high
Rice	`Os08g0120000` (OJ1005_B05.29-2) - identity=68.5; qcov=0.993; evalue=1.16e-135; confidence=high
GO	GO:0005739 (mitochondrion); GO:0006099 (tricarboxylic acid cycle); GO:0009055 (electron transfer activity); GO:0009060 (aerobic respiration); GO:0022904 (respiratory electron transport chain); GO:0051537 (2 iron, 2 sulfur cluster binding)
KEGG	smil00020 (Citrate cycle (TCA cycle) - Salvia miltiorrhiza (redroot sage)); smil00190 (Oxidative phosphorylation - Salvia miltiorrhiza (redroot sage)); smil01100 (Metabolic pathways - Salvia miltiorrhiza (redroot sage)); smil01110 (Biosynthesis of secondary metabolites - Salvia miltiorrhiza (redroot sage)); smil01200 (Carbon metabolism - Salvia miltiorrhiza (redroot sage))
Pfam	PF13085 (Fer2_3); PF13183 (Fer4_8); PF13237 (Fer4_10); PF13534 (Fer4_17)
InterPro	-
eggNOG	-
NR	GeneID:131008730

打开注释模块

亚细胞定位 Top 5

Rank	定位位置	中文	Score	Protein ID
1	Mitochondrion	线粒体	1.00000	`XP_057791739.1`
2	Mitochondrion membrane	线粒体膜	1.00000	`XP_057791739.1`
3	Mitochondrion inner membrane	线粒体内膜	1.00000	`XP_057791739.1`
4	Nucleus	细胞核	0.00000	`XP_057791739.1`
5	Chromosome	染色体	0.00000	`XP_057791739.1`

进入亚细胞定位查询

EMS 诱变突变

下表显示该基因在丹参 EMS 材料中的前 12 个候选突变；完整结果可进入 EMS 突变库继续筛选或下载。

位置	REF	ALT	类型	影响	携带材料数	材料
`Chr2:69357763`	`C`	`T`	EMS_canonical_SNV	CDS_variant	1	A15
`Chr2:69357840`	`TG`	`T`	1bp_deletion	frameshift_variant	1	B48
`Chr2:69357840`	`TG`	`T`	1bp_deletion	CDS_variant	1	B48
`Chr2:69357854`	`C`	`T`	EMS_canonical_SNV	CDS_variant	1	C44
`Chr2:69359868`	`G`	`A`	EMS_canonical_SNV	CDS_variant	1	D10
`Chr2:69359895`	`G`	`A`	EMS_canonical_SNV	CDS_variant	1	D10
`Chr2:69359908`	`C`	`T`	EMS_canonical_SNV	CDS_variant	2	B55,B77
`Chr2:69360196`	`G`	`A`	EMS_canonical_SNV	CDS_variant	3	A4,B85,C85
`Chr2:69360244`	`C`	`T`	EMS_canonical_SNV	CDS_variant	2	C17,C44
`Chr2:69360286`	`G`	`A`	EMS_canonical_SNV	CDS_variant	1	B104
`Chr2:69360304`	`C`	`T`	EMS_canonical_SNV	CDS_variant	1	C17

进入 EMS 突变库

预测功能结构域

结构域结果来自 Pfam-A HMM 数据库和 HMMER hmmscan；位置为对应蛋白序列上的氨基酸坐标。

XP_057791739.1

278 aa

139

278

Fer2_3

Fer4_8

Fer4_10

Fer4_17

PF13085 Fer2_3 49-152 aa PF13183 Fer4_8 188-262 aa PF13237 Fer4_10 190-259 aa PF13534 Fer4_17 190-263 aa

Protein ID	来源	结构域编号	结构域名称	类型	起始 aa	终止 aa	E-value	Score	说明
`XP_057791739.1`	Pfam	`PF13085`	Fer2_3	Domain	49	152	5.1e-34	117.2	2Fe-2S iron-sulfur cluster binding domain
`XP_057791739.1`	Pfam	`PF13183`	Fer4_8	Domain	188	262	2.1e-08	35.3	4Fe-4S dicluster domain
`XP_057791739.1`	Pfam	`PF13237`	Fer4_10	Domain	190	259	1.5e-07	32.0	4Fe-4S dicluster domain
`XP_057791739.1`	Pfam	`PF13534`	Fer4_17	Domain	190	263	3e-09	38.0	4Fe-4S dicluster domain

cDNA / CDS / Protein 序列

下载基因组 DNA（仅基因区域）

每个公开基因均提供参考注释对应的转录本序列；蛋白编码基因另提供 CDS 和蛋白序列。非编码 RNA 不适用 CDS 或蛋白下载。真实 accession 的版本后缀予以保留。

cDNA

1 records

下载 cDNA FASTA

XM_057935756.1
ATCATGAGATATAAAAAATTGATTACTTATAACTTTACAAATCAAACAAGATAAATGAATTTAAGAAAGGGCCTCCCAGACCCAGACCCATTTCCGTCACTACAGCAACCCATAGTGGCGAGGCCTACTGCTCACACGCGCCCCAATAAATACTCATCATCTTATTGTTGCATTTTCTTCTTCATTTTTACAGTCTCCTTTTCTCTCTAAAGGCTCGGGATTCTCTCTCTTCCGATCAATGGCGACTGGATTTGTCCGAC...

CDS

1 records

下载 CDS FASTA

LOC131008730
ATGGCGACTGGATTTGTCCGACGAGCGATAACAAGGGTTCCGGCCCTATCACCGGCGGCCAGAGCTCTCATTTACAGGGAACACGCATCCGAGGCGGCGGCGCAGCAGTTGGATCCGCAGGCGAAGCCGAGCTCCACTCCCAAAACCTTCCAAATCTACCGATGGAATCCGGATACGCCGCAGAAGCCGGACCTCCAGAACTACGAGATTGACCTCAAGGAGTGCGGCCCCATGGTCCTCGACGCGCTAATTAAGATTAA...

Protein

1 records

下载 Protein FASTA

XP_057791739.1
MATGFVRRAITRVPALSPAARALIYREHASEAAAQQLDPQAKPSSTPKTFQIYRWNPDTPQKPDLQNYEIDLKECGPMVLDALIKIKNEVDPTLTFRRSCREGICGSCAMNIDGRNGLACLTKITSGGPTMITPLPHMFVIKDLVVDMTNFYNQYKSIEPWLKRKSPPENPGKENLQTKEDRKKLDGMYECILCACCSTSCPSYWWNPESYLGPAALLHANRWIMDSRDEYTKERLDAINDEFKLYRCHTILNCAKACPK...

上下游序列下载

upstream/downstream 最大各 10000 bp。负链基因会自动反向互补，使最终 FASTA 为转录方向 5′→3′。

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JBrowse

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