当前解析结果
SmilChr02G004722| 统一新 Gene ID | SmilChr02G004722 |
|---|---|
| 名称 | SmilChr02G004722 |
| 描述 | pentatricopeptide repeat-containing protein At4g35850, mitochondrial |
| 染色体 / SeqID | Chr02 / NC_080388.1 |
| 坐标与链方向 | 69460615 - 69467517 / - |
| NCBI Gene ID | LOC131008699 |
|---|---|
| GeneID | 131008699 |
| locus_tag | - |
| NCBI Name | LOC131008699 |
| 原始查询 | SmilChr02G004722 |
| 来源 | GFF basic annotation; NCBI GO GAF; Pfam-A/HMMER; Arabidopsis/Rice homolog |
|---|---|
| 描述 | pentatricopeptide repeat-containing protein At4g35850, mitochondrial |
| 产物 | pentatricopeptide repeat-containing protein At4g35850%2C mitochondrial |
| Arabidopsis | AT4G35850 (AT4G35850)Pentatricopeptide repeat (PPR) superfamily protein [Source:NCBI gene (formerly Entrezgene);Acc:829739] identity=62.2; qcov=0.986; evalue=0; confidence=high |
| Rice | Os05g0145600 (RBP-23)- identity=62.6; qcov=0.955; evalue=0; confidence=high |
| GO | GO:0005515 (protein binding); GO:0005739 (mitochondrion) |
| KEGG | - |
| Pfam | PF01535 (PPR); PF12854 (PPR_1); PF13041 (PPR_2); PF13812 (PPR_3); PF17177 (PPR_long) |
| InterPro | - |
| eggNOG | - |
| NR | GeneID:131008699 |
| Rank | 定位位置 | 中文 | Score | Protein ID |
|---|---|---|---|---|
| 1 | Mitochondrion | 线粒体 | 1.00000 | XP_057791693.1 |
| 2 | Mitochondrion membrane | 线粒体膜 | 0.20000 | XP_057791693.1 |
| 3 | Mitochondrion inner membrane | 线粒体内膜 | 0.20000 | XP_057791693.1 |
| 4 | Nucleus | 细胞核 | 0.00000 | XP_057791693.1 |
| 5 | Chromosome | 染色体 | 0.00000 | XP_057791693.1 |
下表显示该基因在丹参 EMS 材料中的前 12 个候选突变；完整结果可进入 EMS 突变库继续筛选或下载。
| 位置 | REF | ALT | 类型 | 影响 | 携带材料数 | 材料 |
|---|---|---|---|---|---|---|
Chr2:69461169 |
C |
T |
EMS_canonical_SNV | CDS_variant | 3 | A4,B85,C85 |
Chr2:69461226 |
G |
A |
EMS_canonical_SNV | CDS_variant | 4 | A16,B58,B79,B82 |
Chr2:69461470 |
G |
A |
EMS_canonical_SNV | CDS_variant | 4 | A9,B122,B93,C2 |
Chr2:69463712 |
G |
A |
EMS_canonical_SNV | CDS_variant | 2 | B132,D8 |
Chr2:69463716 |
G |
A |
EMS_canonical_SNV | CDS_variant | 2 | B33,C72 |
Chr2:69463742 |
C |
CGA |
2bp_insertion | frameshift_variant | 3 | B1,B135,B7 |
Chr2:69463742 |
C |
CGA |
2bp_insertion | CDS_variant | 3 | B1,B135,B7 |
Chr2:69465408 |
C |
T |
EMS_canonical_SNV | CDS_variant | 3 | B55,B94,C37 |
Chr2:69466009 |
G |
A |
EMS_canonical_SNV | CDS_variant | 1 | C31 |
Chr2:69466175 |
C |
T |
EMS_canonical_SNV | CDS_variant | 1 | C31 |
Chr2:69466494 |
G |
A |
EMS_canonical_SNV | CDS_variant | 2 | A8,C45 |
Chr2:69466547 |
G |
A |
EMS_canonical_SNV | CDS_variant | 1 | B57 |
结构域结果来自 Pfam-A HMM 数据库和 HMMER hmmscan；位置为对应蛋白序列上的氨基酸坐标。
XP_057791693.1PF17177
PPR_long 59-171 aa
PF13812
PPR_3 61-121 aa
PF13812
PPR_3 98-154 aa
PF12854
PPR_1 103-136 aa
PF13041
PPR_2 107-155 aa
PF01535
PPR 112-138 aa
PF13812
PPR_3 130-175 aa
PF01535
PPR 146-174 aa
PF01535
PPR 296-315 aa
| Protein ID | 来源 | 结构域编号 | 结构域名称 | 类型 | 起始 aa | 终止 aa | E-value | Score | 说明 |
|---|---|---|---|---|---|---|---|---|---|
XP_057791693.1 |
Pfam | PF17177 |
PPR_long | Repeat | 59 | 171 | 2.9e-13 | 50.4 | Pentacotripeptide-repeat region of PRORP |
XP_057791693.1 |
Pfam | PF13812 |
PPR_3 | Repeat | 61 | 121 | 4.9e-20 | 72.1 | Pentatricopeptide repeat domain |
XP_057791693.1 |
Pfam | PF13812 |
PPR_3 | Repeat | 98 | 154 | 4.9e-20 | 72.1 | Pentatricopeptide repeat domain |
XP_057791693.1 |
Pfam | PF12854 |
PPR_1 | Repeat | 103 | 136 | 3.6e-14 | 52.9 | PPR repeat |
XP_057791693.1 |
Pfam | PF13041 |
PPR_2 | Repeat | 107 | 155 | 3.6e-22 | 78.9 | PPR repeat family |
XP_057791693.1 |
Pfam | PF01535 |
PPR | Repeat | 112 | 138 | 1.1e-12 | 48.0 | PPR repeat |
XP_057791693.1 |
Pfam | PF13812 |
PPR_3 | Repeat | 130 | 175 | 4.9e-20 | 72.1 | Pentatricopeptide repeat domain |
XP_057791693.1 |
Pfam | PF01535 |
PPR | Repeat | 146 | 174 | 1.1e-12 | 48.0 | PPR repeat |
XP_057791693.1 |
Pfam | PF01535 |
PPR | Repeat | 296 | 315 | 1.1e-12 | 48.0 | PPR repeat |
每个公开基因均提供参考注释对应的转录本序列；蛋白编码基因另提供 CDS 和蛋白序列。非编码 RNA 不适用 CDS 或蛋白下载。真实 accession 的版本后缀予以保留。
1 records
下载 cDNA FASTA1 records
下载 CDS FASTA1 records
下载 Protein FASTAupstream/downstream 最大各 10000 bp。负链基因会自动反向互补，使最终 FASTA 为转录方向 5′→3′。