Gene Card 基因详情

支持统一新 ID、NCBI Gene ID、GeneID、locus_tag、Transcript ID、Protein ID，以及已人工核对的文献基因名查询。页面会先解析到丹参统一基因，再整合坐标、序列、注释、亚细胞定位、EMS 突变和下载入口。

当前解析结果

`SmilChr02G004723`

染色体: Chr02 坐标: 69476382-69481542 链方向: - 类型: protein_coding

基本信息

统一新 Gene ID	`SmilChr02G004723`
名称	SmilChr02G004723
描述	E3 ubiquitin-protein ligase RGLG2-like
染色体 / SeqID	Chr02 / NC_080388.1
坐标与链方向	69476382 - 69481542 / `-`

ID 对照

NCBI Gene ID	`LOC131008691`
GeneID	`131008691`
locus_tag	`-`
NCBI Name	`LOC131008691`
原始查询	`SmilChr02G004723`

查看完整 ID 对照表

功能注释

来源	GFF basic annotation; Pfam-A/HMMER; Arabidopsis/Rice homolog
描述	E3 ubiquitin-protein ligase RGLG2-like
产物	E3 ubiquitin-protein ligase RGLG2-like
Arabidopsis	`AT3G01650` (RGLG1) RING domain ligase1 [Source:NCBI gene (formerly Entrezgene);Acc:819911] identity=74.1; qcov=0.756; evalue=0; confidence=high
Rice	`Os01g0908700` (OsRFP) - identity=71.4; qcov=0.768; evalue=0; confidence=high
GO	-
KEGG	-
Pfam	PF07002 (Copine); PF13920 (zf-C3HC4_3)
InterPro	-
eggNOG	-
NR	GeneID:131008691

打开注释模块

亚细胞定位 Top 5

Rank	定位位置	中文	Score	Protein ID
1	Cytoplasm	细胞质	0.80000	`XP_057791676.1`
2	Cytosol	细胞质基质	0.60000	`XP_057791677.1`
3	Nucleus	细胞核	0.20000	`XP_057791676.1`
4	Cell membrane	细胞膜	0.20000	`XP_057791676.1`
5	Endosome	内体	0.20000	`XP_057791677.1`

进入亚细胞定位查询

EMS 诱变突变

下表显示该基因在丹参 EMS 材料中的前 12 个候选突变；完整结果可进入 EMS 突变库继续筛选或下载。

位置	REF	ALT	类型	影响	携带材料数	材料
`Chr2:69476710`	`G`	`A`	EMS_canonical_SNV	CDS_variant	1	B110
`Chr2:69477241`	`G`	`A`	EMS_canonical_SNV	CDS_variant	4	B13,B64,B98,C67
`Chr2:69477247`	`G`	`A`	EMS_canonical_SNV	CDS_variant	3	B123,B3,C15
`Chr2:69477267`	`G`	`GA`	1bp_insertion	frameshift_variant	1	D11
`Chr2:69477267`	`G`	`GA`	1bp_insertion	CDS_variant	1	D11
`Chr2:69477302`	`G`	`A`	EMS_canonical_SNV	CDS_variant	1	B46
`Chr2:69477321`	`G`	`A`	EMS_canonical_SNV	CDS_variant	1	B46
`Chr2:69477385`	`G`	`A`	EMS_canonical_SNV	CDS_variant	1	C45
`Chr2:69477528`	`C`	`T`	EMS_canonical_SNV	CDS_variant	3	B140,C13,C61
`Chr2:69477547`	`C`	`T`	EMS_canonical_SNV	CDS_variant	2	C13,C61
`Chr2:69477799`	`G`	`A`	EMS_canonical_SNV	CDS_variant	2	C17,C44
`Chr2:69477800`	`C`	`T`	EMS_canonical_SNV	CDS_variant	2	C17,C44

进入 EMS 突变库

预测功能结构域

结构域结果来自 Pfam-A HMM 数据库和 HMMER hmmscan；位置为对应蛋白序列上的氨基酸坐标。

XP_057791676.1

503 aa

252

503

Copine

PF07002 Copine 180-393 aa

XP_057791677.1

501 aa

250

501

Copine

zf-C3HC4_3

PF07002 Copine 180-393 aa PF13920 zf-C3HC4_3 455-496 aa

XP_057791678.1

501 aa

250

501

Copine

zf-C3HC4_3

PF07002 Copine 180-393 aa PF13920 zf-C3HC4_3 455-496 aa

XP_057791679.1

501 aa

250

501

Copine

zf-C3HC4_3

PF07002 Copine 180-393 aa PF13920 zf-C3HC4_3 455-496 aa

XP_057791680.1

501 aa

250

501

Copine

zf-C3HC4_3

PF07002 Copine 180-393 aa PF13920 zf-C3HC4_3 455-496 aa

XP_057791681.1

501 aa

250

501

Copine

zf-C3HC4_3

PF07002 Copine 180-393 aa PF13920 zf-C3HC4_3 455-496 aa

XP_057791682.1

501 aa

250

501

Copine

zf-C3HC4_3

PF07002 Copine 180-393 aa PF13920 zf-C3HC4_3 455-496 aa

Protein ID	来源	结构域编号	结构域名称	类型	起始 aa	终止 aa	E-value	Score	说明
`XP_057791676.1`	Pfam	`PF07002`	Copine	Domain	180	393	6.5e-74	248.8	Copine
`XP_057791677.1`	Pfam	`PF07002`	Copine	Domain	180	393	6.4e-74	248.8	Copine
`XP_057791677.1`	Pfam	`PF13920`	zf-C3HC4_3	Domain	455	496	1.9e-07	31.4	Zinc finger, C3HC4 type (RING finger)
`XP_057791678.1`	Pfam	`PF07002`	Copine	Domain	180	393	6.4e-74	248.8	Copine
`XP_057791678.1`	Pfam	`PF13920`	zf-C3HC4_3	Domain	455	496	1.9e-07	31.4	Zinc finger, C3HC4 type (RING finger)
`XP_057791679.1`	Pfam	`PF07002`	Copine	Domain	180	393	6.4e-74	248.8	Copine
`XP_057791679.1`	Pfam	`PF13920`	zf-C3HC4_3	Domain	455	496	1.9e-07	31.4	Zinc finger, C3HC4 type (RING finger)
`XP_057791680.1`	Pfam	`PF07002`	Copine	Domain	180	393	6.4e-74	248.8	Copine
`XP_057791680.1`	Pfam	`PF13920`	zf-C3HC4_3	Domain	455	496	1.9e-07	31.4	Zinc finger, C3HC4 type (RING finger)
`XP_057791681.1`	Pfam	`PF07002`	Copine	Domain	180	393	6.4e-74	248.8	Copine
`XP_057791681.1`	Pfam	`PF13920`	zf-C3HC4_3	Domain	455	496	1.9e-07	31.4	Zinc finger, C3HC4 type (RING finger)
`XP_057791682.1`	Pfam	`PF07002`	Copine	Domain	180	393	6.4e-74	248.8	Copine
`XP_057791682.1`	Pfam	`PF13920`	zf-C3HC4_3	Domain	455	496	1.9e-07	31.4	Zinc finger, C3HC4 type (RING finger)

cDNA / CDS / Protein 序列

下载基因组 DNA（仅基因区域）

每个公开基因均提供参考注释对应的转录本序列；蛋白编码基因另提供 CDS 和蛋白序列。非编码 RNA 不适用 CDS 或蛋白下载。真实 accession 的版本后缀予以保留。

cDNA

7 records

下载 cDNA FASTA

XM_057935694.1
TATATAATTTGTTAAACAGATGTAAGATTCCCACTAAAAAAGCCCCTTTTTTCCACCAATCAATTTTTCAAAAGGCCAGTAAAGAGAAAGTTCCTGCTGCCTGCTAATTCCAGCATTTTCATTAAAAATACAATAAATTTCTAGAAAAGTTGAACCCCTTTTGTTTGAAATTTGCGTGTCAAATTCCCTTTTTCTGATACGGATTCTGAATCCTGCAATGACTCCTGGCGATAAAGAAATGTTGCCAAGACTAATTTTCG...

XM_057935696.1
CCTTTTGTTTGAAATTTGCGTGTCAAATTCCCTTTTTCTGATACGGATTCTGAATCCTGCAATGACTCCTGGCGATAAAGAAATGTTGCCAAGACTAATTTTCGCTGCTCAGCTCTCTTTCTCTCTCTATAATTAATCTAGTAAGTGGGATCTTGAAAAAGCTGGTTGAGTCTTCAGAAGTTACAATTTTGATGATGGTTTTTATTTGGGATTTCACATTTTCGCTTAGATTGCAAGTTTCTGTGTGGACACATTAATTT...

CDS

7 records

下载 CDS FASTA

LOC131008691
ATGGGAAATAAAAATTCGAGCCCTAGAGATGAAGGTAGTTGGAGGCAACCTTCAACAACTAGGACTAGTTCTTCTTCTGGATGGACGCACGACTCTGCTCATGCAACATTTTCGCAGTATGCACAAAATTATCCTAAGCCGAATCAACCTTCAACGACTGGTTCTAGTTCATCTGCAGGGCTGCAGCATGATGACATGAACATTGAATCTTCGAATTCATATCATCATGATCAGAGGCCCCCTGTAGCGCCTTTATATCC...

Protein

7 records

下载 Protein FASTA

XP_057791676.1
MGNKNSSPRDEGSWRQPSTTRTSSSSGWTHDSAHATFSQYAQNYPKPNQPSTTGSSSSAGLQHDDMNIESSNSYHHDQRPPVAPLYPAGYPPIEQFYATPQYYAPPSPTPEPYHLLDPTVHVPKKRLDKRYSRIADNYHSLQEVTEALARAGLESSNLIIGIDFTKSNEWTGKKSYNGQSLHHIGSGLNPYEQAITIVGKTLAAFDDDNLIPCFGFGDASTHDQDVFSFYPDGRHCNGFEEVLHRYRELVPNLKLAGPTS...

XP_057791677.1
MGNKNSSPRDEGSWRQPSTTRTSSSSGWTHDSAHATFSQYAQNYPKPNQPSTTGSSSSAGLQHDDMNIESSNSYHHDQRPPVAPLYPAGYPPIEQFYATPQYYAPPSPTPEPYHLLDPTVHVPKKRLDKRYSRIADNYHSLQEVTEALARAGLESSNLIIGIDFTKSNEWTGKKSYNGQSLHHIGSGLNPYEQAITIVGKTLAAFDDDNLIPCFGFGDASTHDQDVFSFYPDGRHCNGFEEVLHRYRELVPNLKLAGPTS...

上下游序列下载

upstream/downstream 最大各 10000 bp。负链基因会自动反向互补，使最终 FASTA 为转录方向 5′→3′。

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