Gene Card 基因详情

支持统一新 ID、NCBI Gene ID、GeneID、locus_tag、Transcript ID、Protein ID，以及已人工核对的文献基因名查询。页面会先解析到丹参统一基因，再整合坐标、序列、注释、亚细胞定位、EMS 突变和下载入口。

当前解析结果

`SmilChr02G004732`

染色体: Chr02 坐标: 69555676-69561726 链方向: - 类型: protein_coding

基本信息

统一新 Gene ID	`SmilChr02G004732`
名称	SmilChr02G004732
描述	ribosomal RNA-processing protein 8
染色体 / SeqID	Chr02 / NC_080388.1
坐标与链方向	69555676 - 69561726 / `-`

ID 对照

NCBI Gene ID	`LOC131008731`
GeneID	`131008731`
locus_tag	`-`
NCBI Name	`LOC131008731`
原始查询	`SmilChr02G004732`

查看完整 ID 对照表

功能注释

来源	GFF basic annotation; NCBI GO GAF; Pfam-A/HMMER; Arabidopsis/Rice homolog
描述	ribosomal RNA-processing protein 8
产物	ribosomal RNA-processing protein 8
Arabidopsis	`AT5G40530` (AT5G40530) S-adenosyl-L-methionine-dependent methyltransferases superfamily protein [Source:NCBI gene (formerly Entrezgene);Acc:834051] identity=65.5; qcov=0.942; evalue=1.24e-122; confidence=high
Rice	`Os02g0593900` - identity=69.2; qcov=0.856; evalue=8.2e-122; confidence=high
GO	GO:0005730 (nucleolus); GO:0008168 (methyltransferase activity)
KEGG	-
Pfam	PF05148 (Methyltransf_8); PF08241 (Methyltransf_11)
InterPro	-
eggNOG	-
NR	GeneID:131008731

打开注释模块

亚细胞定位 Top 5

Rank	定位位置	中文	Score	Protein ID
1	Nucleus	细胞核	1.00000	`XP_057791740.1`
2	Nucleolus	核仁	1.00000	`XP_057791740.1`
3	Chromosome	染色体	0.00000	`XP_057791740.1`
4	Centromere	着丝粒	0.00000	`XP_057791740.1`
5	Chromatin	染色质	0.00000	`XP_057791740.1`

进入亚细胞定位查询

EMS 诱变突变

下表显示该基因在丹参 EMS 材料中的前 12 个候选突变；完整结果可进入 EMS 突变库继续筛选或下载。

位置	REF	ALT	类型	影响	携带材料数	材料
`Chr2:69559401`	`G`	`A`	EMS_canonical_SNV	CDS_variant	2	B79,C28
`Chr2:69559597`	`C`	`T`	EMS_canonical_SNV	CDS_variant	3	B6,C63,D2
`Chr2:69559624`	`G`	`A`	EMS_canonical_SNV	CDS_variant	5	B110,B17,B90,B92,C58
`Chr2:69559683`	`G`	`A`	EMS_canonical_SNV	CDS_variant	1	B109
`Chr2:69560189`	`G`	`A`	EMS_canonical_SNV	CDS_variant	1	B94
`Chr2:69561250`	`C`	`T`	EMS_canonical_SNV	CDS_variant	1	B46
`Chr2:69561344`	`G`	`A`	EMS_canonical_SNV	CDS_variant	2	B56,B96
`Chr2:69561359`	`C`	`T`	EMS_canonical_SNV	CDS_variant	1	B46
`Chr2:69561410`	`G`	`A`	EMS_canonical_SNV	CDS_variant	1	B91
`Chr2:69561440`	`G`	`A`	EMS_canonical_SNV	CDS_variant	1	B46
`Chr2:69561480`	`C`	`T`	EMS_canonical_SNV	CDS_variant	1	B30

进入 EMS 突变库

预测功能结构域

结构域结果来自 Pfam-A HMM 数据库和 HMMER hmmscan；位置为对应蛋白序列上的氨基酸坐标。

XP_057791740.1

277 aa

138

277

Methyltransf_8

Methyltransf_11

PF05148 Methyltransf_8 58-277 aa PF08241 Methyltransf_11 132-208 aa

XP_057791742.1

277 aa

138

277

Methyltransf_8

Methyltransf_11

PF05148 Methyltransf_8 58-277 aa PF08241 Methyltransf_11 132-208 aa

XP_057791743.1

277 aa

138

277

Methyltransf_8

Methyltransf_11

PF05148 Methyltransf_8 58-277 aa PF08241 Methyltransf_11 132-208 aa

Protein ID	来源	结构域编号	结构域名称	类型	起始 aa	终止 aa	E-value	Score	说明
`XP_057791740.1`	Pfam	`PF05148`	Methyltransf_8	Family	58	277	5.9e-83	278.8	Hypothetical methyltransferase
`XP_057791740.1`	Pfam	`PF08241`	Methyltransf_11	Domain	132	208	2.5e-07	31.9	Methyltransferase domain
`XP_057791742.1`	Pfam	`PF05148`	Methyltransf_8	Family	58	277	5.9e-83	278.8	Hypothetical methyltransferase
`XP_057791742.1`	Pfam	`PF08241`	Methyltransf_11	Domain	132	208	2.5e-07	31.9	Methyltransferase domain
`XP_057791743.1`	Pfam	`PF05148`	Methyltransf_8	Family	58	277	5.9e-83	278.8	Hypothetical methyltransferase
`XP_057791743.1`	Pfam	`PF08241`	Methyltransf_11	Domain	132	208	2.5e-07	31.9	Methyltransferase domain

cDNA / CDS / Protein 序列

下载基因组 DNA（仅基因区域）

每个公开基因均提供参考注释对应的转录本序列；蛋白编码基因另提供 CDS 和蛋白序列。非编码 RNA 不适用 CDS 或蛋白下载。真实 accession 的版本后缀予以保留。

cDNA

3 records

下载 cDNA FASTA

XM_057935760.1
CAAAAATGAAACCAAGTCAAGTGGGATAATTATCCTGCAGTCTAAATATTTTTACAGTGAATGGGCCGAAATCTTTGTCCAAAAAATACCCATCGTTAAAATTGAAACCCAATATTCTAATGGGCCTTCGGCCCAATGTTTGCCCTCTTTCTTTGCTACTGCTACCGATCTCTGCCGCTGAAAATTGAACCAAAATAATTCGTGGGAAAATGACGGAGGAGCAGCGGCGGAGCAAAAAGAGGAAACGCGGGAACCGCCGG...

XM_057935759.1
CAAAAATGAAACCAAGTCAAGTGGGATAATTATCCTGCAGTCTAAATATTTTTACAGTGAATGGGCCGAAATCTTTGTCCAAAAAATACCCATCGTTAAAATTGAAACCCAATATTCTAATGGGCCTTCGGCCCAATGTTTGCCCTCTTTCTTTGCTACTGCTACCGATCTCTGCCGCTGAAAATTGAACCAAAATAATTCGTGGGAAAATGACGGAGGAGCAGCGGCGGAGCAAAAAGAGGAAACGCGGGAACCGCCGG...

CDS

3 records

下载 CDS FASTA

LOC131008731
ATGACGGAGGAGCAGCGGCGGAGCAAAAAGAGGAAACGCGGGAACCGCCGGAAGGAAAAGAGTGTCTCCGATAGAGCCGCCGCGAAAAATAACGCATCTTCATCCATCATCGCATCTTCCGGTTCTGCTACTCCAACTAAGAGCAGCTCGAAATCGAAGTCTTCTTTCCTCGACAAAATGAAAGCTAGACTATCAGGAGGTTATTTCCGCATGATCAATGAGAAGCTTTACACTTGCAGTGGAGATGAGGCCCTGCAATA...

Protein

3 records

下载 Protein FASTA

XP_057791740.1
MTEEQRRSKKRKRGNRRKEKSVSDRAAAKNNASSSIIASSGSATPTKSSSKSKSSFLDKMKARLSGGYFRMINEKLYTCSGDEALQYFKEDPSLFNVYHSGYQAQMSLWPEQPNDIIIKWIKDRSPSLVVADFGCGDARLARSVKNKVHSFDLVSNDPSVIACDMSNTPLVSSSVDVAVFCLSLMGTNFPSYIQEANRVLKPQGWLLIAEVKSRFDPTTGGADPNNFVEAICELGFSSTSKDFSNKMFILFHFQKKGKQK...

XP_057791742.1
MTEEQRRSKKRKRGNRRKEKSVSDRAAAKNNASSSIIASSGSATPTKSSSKSKSSFLDKMKARLSGGYFRMINEKLYTCSGDEALQYFKEDPSLFNVYHSGYQAQMSLWPEQPNDIIIKWIKDRSPSLVVADFGCGDARLARSVKNKVHSFDLVSNDPSVIACDMSNTPLVSSSVDVAVFCLSLMGTNFPSYIQEANRVLKPQGWLLIAEVKSRFDPTTGGADPNNFVEAICELGFSSTSKDFSNKMFILFHFQKKGKQK...

上下游序列下载

upstream/downstream 最大各 10000 bp。负链基因会自动反向互补，使最终 FASTA 为转录方向 5′→3′。

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