当前解析结果
SmilChr02G004735| 统一新 Gene ID | SmilChr02G004735 |
|---|---|
| 名称 | SmilChr02G004735 |
| 描述 | U-box domain-containing protein 4 |
| 染色体 / SeqID | Chr02 / NC_080388.1 |
| 坐标与链方向 | 69579010 - 69580653 / + |
| NCBI Gene ID | LOC131008718 |
|---|---|
| GeneID | 131008718 |
| locus_tag | - |
| NCBI Name | LOC131008718 |
| 原始查询 | SmilChr02G004735 |
| 来源 | GFF basic annotation; NCBI GO GAF; Pfam-A/HMMER; Arabidopsis/Rice homolog |
|---|---|
| 描述 | U-box domain-containing protein 4 |
| 产物 | U-box domain-containing protein 4 |
| Arabidopsis | AT5G14510 (AT5G14510)ARM repeat superfamily protein [Source:NCBI gene (formerly Entrezgene);Acc:831302] identity=49.9; qcov=1.01; evalue=6.48e-96; confidence=high |
| Rice | Os01g0112500- identity=40.4; qcov=0.964; evalue=4.34e-49; confidence=medium |
| GO | GO:0005515 (protein binding); GO:0005634 (nucleus); GO:0005737 (cytoplasm) |
| KEGG | - |
| Pfam | PF25598 (ARM_PUB) |
| InterPro | - |
| eggNOG | - |
| NR | GeneID:131008718 |
| Rank | 定位位置 | 中文 | Score | Protein ID |
|---|---|---|---|---|
| 1 | Nucleus | 细胞核 | 0.80000 | XP_057791716.1 |
| 2 | Cytoplasm | 细胞质 | 0.80000 | XP_057791716.1 |
| 3 | Cytosol | 细胞质基质 | 0.60000 | XP_057791716.1 |
| 4 | Chromosome | 染色体 | 0.00000 | XP_057791716.1 |
| 5 | Centromere | 着丝粒 | 0.00000 | XP_057791716.1 |
下表显示该基因在丹参 EMS 材料中的前 12 个候选突变；完整结果可进入 EMS 突变库继续筛选或下载。
| 位置 | REF | ALT | 类型 | 影响 | 携带材料数 | 材料 |
|---|---|---|---|---|---|---|
Chr2:69579372 |
G |
A |
EMS_canonical_SNV | CDS_variant | 1 | D10 |
Chr2:69579418 |
G |
A |
EMS_canonical_SNV | CDS_variant | 4 | B6,C63,C71,D2 |
Chr2:69579640 |
G |
A |
EMS_canonical_SNV | CDS_variant | 2 | A4,B85 |
Chr2:69579906 |
C |
T |
EMS_canonical_SNV | CDS_variant | 1 | B104 |
Chr2:69580153 |
G |
A |
EMS_canonical_SNV | CDS_variant | 1 | B73 |
Chr2:69580163 |
G |
A |
EMS_canonical_SNV | CDS_variant | 1 | C18 |
Chr2:69580169 |
C |
T |
EMS_canonical_SNV | CDS_variant | 2 | C19,D4 |
Chr2:69580210 |
C |
T |
EMS_canonical_SNV | CDS_variant | 1 | B104 |
Chr2:69580303 |
GA |
G |
1bp_deletion | frameshift_variant | 1 | C21 |
Chr2:69580303 |
GA |
G |
1bp_deletion | CDS_variant | 1 | C21 |
Chr2:69580356 |
CA |
C |
1bp_deletion | frameshift_variant | 120 | A1,A11,A13,A14,A16,A2,A21,A23,A24,A3,A8,B1,B10,B100,B102,B103,B108,B109,B114,B120,B121,B124,B126,B128,B136,B16,B18,B2,B20,B22,B23,B25,B3,B36,B42,B43,B45,B47,B48,B49,B50,B52,B55,B56,B58,B59,B6,B60,B62,B63,B64,B65,B68,B70,B77,B78,B79,B8,B80,B83,B89,B90,B91,B92,B95,B96,B98,C10,C11,C14,C15,C17,C18,C19,C20,C21,C23,C25,C3,C31,C32,C35,C38,C4,C40,C43,C44,C46,C47,C49,C5,C50,C52,C55,C56,C57,C6,C63,C64,C65,C66,C68,C69,C7,C70,C73,C75,C77,C78,C8,C80,C82,C85,C9,D1,D2,D3,D6,D8,D9 |
Chr2:69580358 |
TCG |
T |
2bp_deletion | frameshift_variant | 92 | A1,A11,A13,A14,A16,A21,A23,A24,A3,A8,B10,B100,B102,B103,B114,B120,B121,B124,B126,B18,B20,B22,B23,B3,B36,B42,B43,B45,B47,B49,B52,B55,B58,B59,B60,B62,B63,B64,B65,B70,B77,B78,B79,B8,B80,B89,B91,B98,C11,C14,C15,C17,C18,C21,C23,C3,C31,C32,C35,C38,C4,C43,C44,C46,C47,C49,C50,C55,C56,C57,C6,C63,C64,C65,C66,C68,C69,C7,C70,C73,C75,C77,C8,C80,C82,C85,C9,D1,D2,D6,D8,D9 |
结构域结果来自 Pfam-A HMM 数据库和 HMMER hmmscan；位置为对应蛋白序列上的氨基酸坐标。
XP_057791716.1PF25598
ARM_PUB 124-285 aa
| Protein ID | 来源 | 结构域编号 | 结构域名称 | 类型 | 起始 aa | 终止 aa | E-value | Score | 说明 |
|---|---|---|---|---|---|---|---|---|---|
XP_057791716.1 |
Pfam | PF25598 |
ARM_PUB | Repeat | 124 | 285 | 2.9e-15 | 57.2 | Plant U-box protein ARM repeat region |
每个公开基因均提供参考注释对应的转录本序列；蛋白编码基因另提供 CDS 和蛋白序列。非编码 RNA 不适用 CDS 或蛋白下载。真实 accession 的版本后缀予以保留。
1 records
下载 cDNA FASTA1 records
下载 CDS FASTA1 records
下载 Protein FASTAupstream/downstream 最大各 10000 bp。负链基因会自动反向互补，使最终 FASTA 为转录方向 5′→3′。