当前解析结果
SmilChr02G004736| 统一新 Gene ID | SmilChr02G004736 |
|---|---|
| 名称 | SmilChr02G004736 |
| 描述 | uncharacterized SmilChr02G004736 |
| 染色体 / SeqID | Chr02 / NC_080388.1 |
| 坐标与链方向 | 69581968 - 69585635 / - |
| NCBI Gene ID | LOC131008713 |
|---|---|
| GeneID | 131008713 |
| locus_tag | - |
| NCBI Name | LOC131008713 |
| 原始查询 | SmilChr02G004736 |
| 来源 | GFF basic annotation; Pfam-A/HMMER; Arabidopsis/Rice homolog |
|---|---|
| 描述 | Sucrase/ferredoxin-like family protein [Source:NCBI gene (formerly Entrezgene);Acc:834049]; symbol=AT5G40510; hit=AT5G40510; species=arabidopsis; confidence=high |
| 产物 | Sucrase/ferredoxin-like family protein [Source:NCBI gene (formerly Entrezgene);Acc:834049]; symbol=AT5G40510; hit=AT5G40510; species=arabidopsis; confidence=high |
| Arabidopsis | AT5G40510 (AT5G40510)Sucrase/ferredoxin-like family protein [Source:NCBI gene (formerly Entrezgene);Acc:834049] identity=49.3; qcov=0.873; evalue=1.74e-117; confidence=high |
| Rice | Os02g0725100- identity=50.7; qcov=0.741; evalue=4.08e-106; confidence=high |
| GO | - |
| KEGG | - |
| Pfam | PF06999 (Suc_Fer-like) |
| InterPro | - |
| eggNOG | - |
| NR | GeneID:131008713 |
| Rank | 定位位置 | 中文 | Score | Protein ID |
|---|---|---|---|---|
| 1 | Chloroplast | 叶绿体 | 0.80000 | XP_057791710.1 |
| 2 | Mitochondrion | 线粒体 | 0.40000 | XP_057791710.1 |
| 3 | Chloroplast membrane | 叶绿体膜 | 0.20000 | XP_057791710.1 |
| 4 | Chloroplast stroma | 叶绿体基质 | 0.20000 | XP_057791710.1 |
| 5 | Nucleus | 细胞核 | 0.00000 | XP_057791710.1 |
下表显示该基因在丹参 EMS 材料中的前 12 个候选突变;完整结果可进入 EMS 突变库继续筛选或下载。
| 位置 | REF | ALT | 类型 | 影响 | 携带材料数 | 材料 |
|---|---|---|---|---|---|---|
Chr2:69582482 |
G |
A |
EMS_canonical_SNV | CDS_variant | 3 | B108,B131,C78 |
Chr2:69582502 |
C |
T |
EMS_canonical_SNV | CDS_variant | 1 | C67 |
Chr2:69582503 |
G |
A |
EMS_canonical_SNV | CDS_variant | 5 | C38,C44,C50,C70,C8 |
Chr2:69582547 |
C |
T |
EMS_canonical_SNV | CDS_variant | 1 | C79 |
Chr2:69582594 |
C |
T |
EMS_canonical_SNV | CDS_variant | 1 | B104 |
Chr2:69582625 |
C |
T |
EMS_canonical_SNV | CDS_variant | 1 | C82 |
Chr2:69583377 |
C |
T |
EMS_canonical_SNV | CDS_variant | 4 | B25,B6,C63,D2 |
Chr2:69583422 |
C |
T |
EMS_canonical_SNV | CDS_variant | 1 | D10 |
Chr2:69583501 |
C |
T |
EMS_canonical_SNV | CDS_variant | 1 | B66 |
Chr2:69585203 |
G |
A |
EMS_canonical_SNV | CDS_variant | 3 | B6,C63,D2 |
Chr2:69585219 |
G |
A |
EMS_canonical_SNV | CDS_variant | 1 | B104 |
Chr2:69585250 |
C |
T |
EMS_canonical_SNV | CDS_variant | 2 | C7,C84 |
结构域结果来自 Pfam-A HMM 数据库和 HMMER hmmscan;位置为对应蛋白序列上的氨基酸坐标。
XP_057791710.1PF06999
Suc_Fer-like 72-283 aa
| Protein ID | 来源 | 结构域编号 | 结构域名称 | 类型 | 起始 aa | 终止 aa | E-value | Score | 说明 |
|---|---|---|---|---|---|---|---|---|---|
XP_057791710.1 |
Pfam | PF06999 |
Suc_Fer-like | Family | 72 | 283 | 2.5e-45 | 155.6 | Sucrase/ferredoxin-like |
每个公开基因均提供参考注释对应的转录本序列;蛋白编码基因另提供 CDS 和蛋白序列。非编码 RNA 不适用 CDS 或蛋白下载。真实 accession 的版本后缀予以保留。
1 records
下载 cDNA FASTA1 records
下载 CDS FASTA1 records
下载 Protein FASTAupstream/downstream 最大各 10000 bp。负链基因会自动反向互补,使最终 FASTA 为转录方向 5′→3′。