当前解析结果
SmilChr02G004745| 统一新 Gene ID | SmilChr02G004745 |
|---|---|
| 名称 | SmilChr02G004745 |
| 描述 | phosphoenolpyruvate/phosphate translocator 2, chloroplastic |
| 染色体 / SeqID | Chr02 / NC_080388.1 |
| 坐标与链方向 | 69663059 - 69666520 / + |
| NCBI Gene ID | LOC131008705 |
|---|---|
| GeneID | 131008705 |
| locus_tag | - |
| NCBI Name | LOC131008705 |
| 原始查询 | SmilChr02G004745 |
| 来源 | GFF basic annotation; NCBI GO GAF; Pfam-A/HMMER; Arabidopsis/Rice homolog |
|---|---|
| 描述 | phosphoenolpyruvate/phosphate translocator 2, chloroplastic |
| 产物 | phosphoenolpyruvate/phosphate translocator 2%2C chloroplastic |
| Arabidopsis | AT3G01550 (PPT2)phosphoenolpyruvate (pep)/phosphate translocator 2 [Source:NCBI gene (formerly Entrezgene);Acc:821114] identity=65.3; qcov=0.815; evalue=4.93e-145; confidence=high |
| Rice | Os08g0344600 (PPT2)- identity=63.5; qcov=0.791; evalue=1.28e-142; confidence=high |
| GO | GO:0005794 (Golgi apparatus); GO:0015297 (antiporter activity); GO:0016020 (membrane); GO:0055085 (transmembrane transport) |
| KEGG | - |
| Pfam | PF00892 (EamA); PF03151 (TPT) |
| InterPro | - |
| eggNOG | - |
| NR | GeneID:131008705 |
| Rank | 定位位置 | 中文 | Score | Protein ID |
|---|---|---|---|---|
| 1 | Chloroplast | 叶绿体 | 1.00000 | XP_057791700.1 |
| 2 | Chloroplast membrane | 叶绿体膜 | 1.00000 | XP_057791700.1 |
| 3 | Nucleus | 细胞核 | 0.00000 | XP_057791700.1 |
| 4 | Chromosome | 染色体 | 0.00000 | XP_057791700.1 |
| 5 | Centromere | 着丝粒 | 0.00000 | XP_057791700.1 |
下表显示该基因在丹参 EMS 材料中的前 12 个候选突变;完整结果可进入 EMS 突变库继续筛选或下载。
| 位置 | REF | ALT | 类型 | 影响 | 携带材料数 | 材料 |
|---|---|---|---|---|---|---|
Chr2:69663270 |
G |
A |
EMS_canonical_SNV | CDS_variant | 4 | B20,B31,B81,B9 |
Chr2:69663279 |
A |
AC |
1bp_insertion | frameshift_variant | 11 | A25,B19,B23,B5,B60,B75,B86,C12,C17,C18,C28 |
Chr2:69663309 |
G |
A |
EMS_canonical_SNV | CDS_variant | 1 | C69 |
Chr2:69663345 |
C |
T |
EMS_canonical_SNV | CDS_variant | 4 | B129,C29,C37,C75 |
Chr2:69663373 |
G |
A |
EMS_canonical_SNV | CDS_variant | 3 | A20,C54,C59 |
Chr2:69663406 |
C |
T |
EMS_canonical_SNV | stop_gained | 14 | A21,A9,B123,B13,B21,B3,B4,B51,B56,B7,B96,C11,C26,C36 |
Chr2:69663418 |
A |
AT |
1bp_insertion | frameshift_variant | 5 | B18,B56,B69,B96,D7 |
Chr2:69663418 |
A |
AT |
1bp_insertion | CDS_variant | 5 | B18,B56,B69,B96,D7 |
Chr2:69663435 |
C |
T |
EMS_canonical_SNV | CDS_variant | 5 | B18,B56,B69,B96,D7 |
Chr2:69663444 |
C |
T |
EMS_canonical_SNV | CDS_variant | 2 | D11,D8 |
Chr2:69663446 |
G |
A |
EMS_canonical_SNV | CDS_variant | 3 | B133,B17,C64 |
Chr2:69663449 |
G |
A |
EMS_canonical_SNV | CDS_variant | 3 | B25,C23,D11 |
结构域结果来自 Pfam-A HMM 数据库和 HMMER hmmscan;位置为对应蛋白序列上的氨基酸坐标。
XP_057791700.1PF03151
TPT 103-396 aa
PF00892
EamA 121-238 aa
| Protein ID | 来源 | 结构域编号 | 结构域名称 | 类型 | 起始 aa | 终止 aa | E-value | Score | 说明 |
|---|---|---|---|---|---|---|---|---|---|
XP_057791700.1 |
Pfam | PF03151 |
TPT | Family | 103 | 396 | 6e-118 | 394.2 | Triose-phosphate Transporter family |
XP_057791700.1 |
Pfam | PF00892 |
EamA | Domain | 121 | 238 | 5e-17 | 63.2 | EamA-like transporter family |
每个公开基因均提供参考注释对应的转录本序列;蛋白编码基因另提供 CDS 和蛋白序列。非编码 RNA 不适用 CDS 或蛋白下载。真实 accession 的版本后缀予以保留。
1 records
下载 cDNA FASTA1 records
下载 CDS FASTA1 records
下载 Protein FASTAupstream/downstream 最大各 10000 bp。负链基因会自动反向互补,使最终 FASTA 为转录方向 5′→3′。