当前解析结果
SmilChr02G004746| 统一新 Gene ID | SmilChr02G004746 |
|---|---|
| 名称 | SmilChr02G004746 |
| 描述 | ATP-dependent RNA helicase-like protein DB10 |
| 染色体 / SeqID | Chr02 / NC_080388.1 |
| 坐标与链方向 | 69666491 - 69672486 / - |
| NCBI Gene ID | LOC131008671 |
|---|---|
| GeneID | 131008671 |
| locus_tag | - |
| NCBI Name | LOC131008671 |
| 原始查询 | SmilChr02G004746 |
| 来源 | GFF basic annotation; NCBI GO GAF; KEGG smil; Pfam-A/HMMER; Arabidopsis/Rice homolog |
|---|---|
| 描述 | ATP-dependent RNA helicase-like protein DB10 |
| 产物 | ATP-dependent RNA helicase-like protein DB10 |
| Arabidopsis | AT5G14610 (AT5G14610)DEAD box RNA helicase family protein [Source:NCBI gene (formerly Entrezgene);Acc:831313] identity=69; qcov=0.844; evalue=0; confidence=high |
| Rice | Os01g0172200 (OsRH14)- identity=55; qcov=1.06; evalue=0; confidence=high |
| GO | GO:0003723 (RNA binding); GO:0003724 (RNA helicase activity); GO:0005515 (protein binding); GO:0005524 (ATP binding); GO:0005634 (nucleus); GO:0005737 (cytoplasm); GO:1990904 (ribonucleoprotein complex) |
| KEGG | smil03040 (Spliceosome - Salvia miltiorrhiza (redroot sage)) |
| Pfam | PF00270 (DEAD); PF00271 (Helicase_C); PF00397 (WW); PF04851 (ResIII) |
| InterPro | - |
| eggNOG | - |
| NR | GeneID:131008671 |
| Rank | 定位位置 | 中文 | Score | Protein ID |
|---|---|---|---|---|
| 1 | Cytoplasm | 细胞质 | 1.00000 | XP_057791624.1 |
| 2 | Nucleus | 细胞核 | 0.60000 | XP_057791624.1 |
| 3 | Cytoplasmic granule | 细胞质颗粒 | 0.60000 | XP_057791624.1 |
| 4 | Cytoplasmic ribonucleoprotein granule | Cytoplasmic ribonucleoprotein granule | 0.40000 | XP_057791624.1 |
| 5 | P-body | P-body | 0.20000 | XP_057791624.1 |
下表显示该基因在丹参 EMS 材料中的前 12 个候选突变；完整结果可进入 EMS 突变库继续筛选或下载。
| 位置 | REF | ALT | 类型 | 影响 | 携带材料数 | 材料 |
|---|---|---|---|---|---|---|
Chr2:69666945 |
C |
CT |
1bp_insertion | frameshift_variant | 54 | A11,A14,A18,A20,A21,A22,A3,B10,B103,B121,B123,B125,B131,B135,B137,B16,B29,B3,B32,B35,B40,B45,B46,B50,B56,B57,B58,B6,B65,B66,B78,B80,B93,B96,B98,C10,C19,C20,C32,C34,C38,C43,C49,C50,C52,C58,C60,C67,C68,C73,C77,C83,D6,D9 |
Chr2:69666986 |
G |
A |
EMS_canonical_SNV | CDS_variant | 4 | B2,B95,C14,C82 |
Chr2:69667455 |
G |
A |
EMS_canonical_SNV | CDS_variant | 4 | B101,B66,B99,C12 |
Chr2:69668253 |
C |
T |
EMS_canonical_SNV | CDS_variant | 4 | B2,B95,C14,C82 |
Chr2:69668280 |
G |
A |
EMS_canonical_SNV | CDS_variant | 5 | A10,A6,B64,B7,B87 |
Chr2:69668603 |
C |
T |
EMS_canonical_SNV | CDS_variant | 1 | C17 |
Chr2:69669231 |
C |
T |
EMS_canonical_SNV | CDS_variant | 2 | A3,D6 |
Chr2:69669303 |
C |
T |
EMS_canonical_SNV | CDS_variant | 1 | B20 |
Chr2:69670008 |
C |
T |
EMS_canonical_SNV | CDS_variant | 1 | D11 |
Chr2:69670891 |
G |
A |
EMS_canonical_SNV | CDS_variant | 1 | D11 |
Chr2:69671297 |
G |
A |
EMS_canonical_SNV | CDS_variant | 1 | C60 |
Chr2:69671432 |
TC |
T |
1bp_deletion | frameshift_variant | 1 | B40 |
结构域结果来自 Pfam-A HMM 数据库和 HMMER hmmscan；位置为对应蛋白序列上的氨基酸坐标。
XP_057791624.1PF00397
WW 22-52 aa
PF00270
DEAD 182-351 aa
PF04851
ResIII 194-345 aa
PF00271
Helicase_C 389-497 aa
| Protein ID | 来源 | 结构域编号 | 结构域名称 | 类型 | 起始 aa | 终止 aa | E-value | Score | 说明 |
|---|---|---|---|---|---|---|---|---|---|
XP_057791624.1 |
Pfam | PF00397 |
WW | Domain | 22 | 52 | 7.8e-07 | 29.7 | WW domain |
XP_057791624.1 |
Pfam | PF00270 |
DEAD | Domain | 182 | 351 | 6.6e-52 | 176.3 | DEAD/DEAH box helicase |
XP_057791624.1 |
Pfam | PF04851 |
ResIII | Family | 194 | 345 | 1.8e-07 | 31.9 | Type III restriction enzyme, res subunit |
XP_057791624.1 |
Pfam | PF00271 |
Helicase_C | Domain | 389 | 497 | 5.9e-36 | 123.8 | Helicase conserved C-terminal domain |
每个公开基因均提供参考注释对应的转录本序列；蛋白编码基因另提供 CDS 和蛋白序列。非编码 RNA 不适用 CDS 或蛋白下载。真实 accession 的版本后缀予以保留。
1 records
下载 cDNA FASTA1 records
下载 CDS FASTA1 records
下载 Protein FASTAupstream/downstream 最大各 10000 bp。负链基因会自动反向互补，使最终 FASTA 为转录方向 5′→3′。