Gene Card 基因详情

支持统一新 ID、NCBI Gene ID、GeneID、locus_tag、Transcript ID、Protein ID，以及已人工核对的文献基因名查询。页面会先解析到丹参统一基因，再整合坐标、序列、注释、亚细胞定位、EMS 突变和下载入口。

当前解析结果

`SmilChr02G004752`

染色体: Chr02 坐标: 69720259-69726423 链方向: + 类型: protein_coding

基本信息

统一新 Gene ID	`SmilChr02G004752`
名称	SmilChr02G004752
描述	monodehydroascorbate reductase 4, peroxisomal
染色体 / SeqID	Chr02 / NC_080388.1
坐标与链方向	69720259 - 69726423 / `+`

ID 对照

NCBI Gene ID	`LOC131008693`
GeneID	`131008693`
locus_tag	`-`
NCBI Name	`LOC131008693`
原始查询	`SmilChr02G004752`

查看完整 ID 对照表

功能注释

来源	GFF basic annotation; NCBI GO GAF; KEGG smil; Pfam-A/HMMER; Arabidopsis/Rice homolog
描述	monodehydroascorbate reductase 4, peroxisomal
产物	monodehydroascorbate reductase 4%2C peroxisomal
Arabidopsis	`AT3G27820` (MDAR4) monodehydroascorbate reductase 4 [Source:NCBI gene (formerly Entrezgene);Acc:822402] identity=74.2; qcov=1.02; evalue=0; confidence=high
Rice	`Os02g0707100` (OsMDHAR4) - identity=69.3; qcov=1.01; evalue=0; confidence=high
GO	GO:0005737 (cytoplasm); GO:0016651 (oxidoreductase activity, acting on NAD(P)H); GO:0050660 (flavin adenine dinucleotide binding)
KEGG	smil00053 (Ascorbate and aldarate metabolism - Salvia miltiorrhiza (redroot sage)); smil01100 (Metabolic pathways - Salvia miltiorrhiza (redroot sage))
Pfam	PF00070 (Pyr_redox); PF07992 (Pyr_redox_2); PF21791 (MDHAR3-like_C)
InterPro	-
eggNOG	-
NR	GeneID:131008693

打开注释模块

亚细胞定位 Top 5

Rank	定位位置	中文	Score	Protein ID
1	Cytosol	细胞质基质	0.60000	`XP_057791685.1`
2	Mitochondrion	线粒体	0.60000	`XP_057791685.1`
3	Peroxisome	过氧化物酶体	0.40000	`XP_057791685.1`
4	Nucleus	细胞核	0.00000	`XP_057791685.1`
5	Chromosome	染色体	0.00000	`XP_057791685.1`

进入亚细胞定位查询

EMS 诱变突变

下表显示该基因在丹参 EMS 材料中的前 12 个候选突变；完整结果可进入 EMS 突变库继续筛选或下载。

位置	REF	ALT	类型	影响	携带材料数	材料
`Chr2:69723816`	`C`	`T`	EMS_canonical_SNV	CDS_variant	5	B13,B35,C48,C8,C86
`Chr2:69724502`	`G`	`A`	EMS_canonical_SNV	CDS_variant	2	B91,C8
`Chr2:69724536`	`G`	`A`	EMS_canonical_SNV	CDS_variant	3	B91,C54,C8
`Chr2:69725007`	`C`	`T`	EMS_canonical_SNV	CDS_variant	2	B91,C8
`Chr2:69725008`	`G`	`A`	EMS_canonical_SNV	CDS_variant	1	B98
`Chr2:69725567`	`TTA`	`T`	2bp_deletion	frameshift_variant	2	A16,D4
`Chr2:69725567`	`TTA`	`T`	2bp_deletion	CDS_variant	2	A16,D4
`Chr2:69725672`	`G`	`A`	EMS_canonical_SNV	CDS_variant	5	A8,B102,B124,B23,C25
`Chr2:69725679`	`C`	`T`	EMS_canonical_SNV	CDS_variant	2	B23,B28
`Chr2:69725719`	`G`	`A`	EMS_canonical_SNV	CDS_variant	5	B13,B35,C48,C8,C86
`Chr2:69725761`	`C`	`T`	EMS_canonical_SNV	CDS_variant	1	B45
`Chr2:69725908`	`C`	`T`	EMS_canonical_SNV	CDS_variant	4	B56,B68,B96,C57

进入 EMS 突变库

预测功能结构域

结构域结果来自 Pfam-A HMM 数据库和 HMMER hmmscan；位置为对应蛋白序列上的氨基酸坐标。

XP_057791685.1

478 aa

239

478

Pyr_redox_2

Pyr_redox

MDHAR3-like_C

PF07992 Pyr_redox_2 7-320 aa PF00070 Pyr_redox 164-245 aa PF21791 MDHAR3-like_C 340-423 aa

Protein ID	来源	结构域编号	结构域名称	类型	起始 aa	终止 aa	E-value	Score	说明
`XP_057791685.1`	Pfam	`PF07992`	Pyr_redox_2	Domain	7	320	3.2e-56	191.6	Pyridine nucleotide-disulphide oxidoreductase
`XP_057791685.1`	Pfam	`PF00070`	Pyr_redox	Domain	164	245	1.9e-16	61.1	Pyridine nucleotide-disulphide oxidoreductase
`XP_057791685.1`	Pfam	`PF21791`	MDHAR3-like_C	Domain	340	423	8.9e-38	129.1	Monodehydroascorbate reductase 3-like, C-terminal domain

cDNA / CDS / Protein 序列

下载基因组 DNA（仅基因区域）

每个公开基因均提供参考注释对应的转录本序列；蛋白编码基因另提供 CDS 和蛋白序列。非编码 RNA 不适用 CDS 或蛋白下载。真实 accession 的版本后缀予以保留。

cDNA

1 records

下载 cDNA FASTA

XM_057935702.1
ATGAACCCTATTTTTCAAAATTCATTTATATTTATCTCCTTTTGAAAATGAAATAAATATAAAGAAAAAAAGAGAAAAGTCAATTGGGCAGTTATTTTGGTAATGGCTCAAGTGTGAAGAGGTGGCGCAACTCTCAAGAAACGATGATTTTCTAGTCTGCTCATCACTATACATATAGATTCCATTGTATATAGTATATACAAATACAGAGAGAGAGGGAAGGTGGCGTGCAGCAGGAAATGGGGAGAGCGTTTGTGTAC...

CDS

1 records

下载 CDS FASTA

LOC131008693
ATGGGGAGAGCGTTTGTGTACGTCATAATCGGAGGAGGGGTGGCAGCTGGCTACGCCGCCCATGAATTCGTTCAGGCCGGCGTCTCCTTTGGTGAACTCTGCATCATCTCCGAAGAGCCTGTTGCACCCTATGAAAGGCCTGCATTGAGCAAAGGTTACTTACTTCCTGAAGCTCCTGCGCGCCTACCTTCATTTCACTGTTGTGTAGGTACCAATGGGGAAAGGTTGGCTCCAAAATGGTACAATGATAATGGTATTGA...

Protein

1 records

下载 Protein FASTA

XP_057791685.1
MGRAFVYVIIGGGVAAGYAAHEFVQAGVSFGELCIISEEPVAPYERPALSKGYLLPEAPARLPSFHCCVGTNGERLAPKWYNDNGIELILGTRVKSADVRRKTLLTATGETISYKYLIVATGARALKLEEFGVNALDAPNVCYLRDVADADRLVDVMRSCSGGHAVVIGGGYIGMECAASLVINSLNVTMVFPEAQCMARLFTPKIAAFYEEFYQSKGVKFVKGTVLTSFDFNADGKVCSVNLRDGSKLPADMVVIGIGI...

上下游序列下载

upstream/downstream 最大各 10000 bp。负链基因会自动反向互补，使最终 FASTA 为转录方向 5′→3′。

下载 upstream 下载 downstream 下载 upstream + gene + downstream

JBrowse

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