当前解析结果
SmilChr02G004767| 统一新 Gene ID | SmilChr02G004767 |
|---|---|
| 名称 | SmilChr02G004767 |
| 描述 | uncharacterized SmilChr02G004767 |
| 染色体 / SeqID | Chr02 / NC_080388.1 |
| 坐标与链方向 | 69847779 - 69848270 / + |
| NCBI Gene ID | LOC131009938 |
|---|---|
| GeneID | 131009938 |
| locus_tag | - |
| NCBI Name | LOC131009938 |
| 原始查询 | SmilChr02G004767 |
| 来源 | GFF basic annotation; Arabidopsis/Rice homolog |
|---|---|
| 描述 | uncharacterized protein [Source:NCBI gene (formerly Entrezgene);Acc:10723117]; symbol=AT5G62865; hit=AT5G62865; species=arabidopsis; confidence=medium |
| 产物 | uncharacterized protein [Source:NCBI gene (formerly Entrezgene);Acc:10723117]; symbol=AT5G62865; hit=AT5G62865; species=arabidopsis; confidence=medium |
| Arabidopsis | AT5G62865 (AT5G62865)uncharacterized protein [Source:NCBI gene (formerly Entrezgene);Acc:10723117] identity=43.3; qcov=0.822; evalue=8.44e-25; confidence=medium |
| Rice | Os02g0743200- identity=41.8; qcov=0.939; evalue=5.34e-24; confidence=medium |
| GO | - |
| KEGG | - |
| Pfam | - |
| InterPro | - |
| eggNOG | - |
| NR | GeneID:131009938 |
| Rank | 定位位置 | 中文 | Score | Protein ID |
|---|---|---|---|---|
| 1 | Cell membrane | 细胞膜 | 1.00000 | XP_057793320.1 |
| 2 | Nucleus | 细胞核 | 0.00000 | XP_057793320.1 |
| 3 | Chromosome | 染色体 | 0.00000 | XP_057793320.1 |
| 4 | Centromere | 着丝粒 | 0.00000 | XP_057793320.1 |
| 5 | Chromatin | 染色质 | 0.00000 | XP_057793320.1 |
下表显示该基因在丹参 EMS 材料中的前 12 个候选突变;完整结果可进入 EMS 突变库继续筛选或下载。
| 位置 | REF | ALT | 类型 | 影响 | 携带材料数 | 材料 |
|---|---|---|---|---|---|---|
Chr2:69847788 |
C |
T |
EMS_canonical_SNV | stop_gained | 8 | A19,A24,A7,B89,B94,C3,C30,C66 |
Chr2:69847794 |
C |
T |
EMS_canonical_SNV | stop_gained | 33 | A13,A14,A24,B111,B123,B125,B132,B134,B15,B20,B23,B41,B55,B57,B59,B69,B80,B88,B9,B98,C15,C22,C25,C4,C42,C48,C5,C6,C60,C63,C64,C74,C83 |
Chr2:69847838 |
CG |
C |
1bp_deletion | frameshift_variant | 43 | A13,A14,A15,A24,B111,B121,B123,B125,B132,B134,B137,B15,B20,B23,B41,B52,B55,B57,B6,B69,B80,B81,B88,B9,B98,C15,C22,C25,C4,C42,C48,C5,C6,C60,C63,C64,C67,C69,C71,C74,C83,C86,C9 |
Chr2:69847841 |
C |
T |
EMS_canonical_SNV | CDS_variant | 1 | B91 |
Chr2:69847842 |
G |
A |
EMS_canonical_SNV | CDS_variant | 2 | C17,C71 |
Chr2:69847901 |
C |
T |
EMS_canonical_SNV | CDS_variant | 1 | B111 |
Chr2:69847919 |
G |
A |
EMS_canonical_SNV | CDS_variant | 1 | B104 |
Chr2:69847932 |
C |
T |
EMS_canonical_SNV | stop_gained | 23 | A3,B106,B127,B133,B140,B17,B2,B40,B52,B80,B81,B85,B93,C21,C23,C50,C62,C69,C7,C71,C72,C77,C80 |
Chr2:69847952 |
C |
T |
EMS_canonical_SNV | CDS_variant | 5 | B133,B140,B2,C23,C50 |
Chr2:69847978 |
G |
A |
EMS_canonical_SNV | CDS_variant | 4 | B32,B84,C13,C28 |
Chr2:69848005 |
C |
T |
EMS_canonical_SNV | CDS_variant | 2 | B29,C65 |
Chr2:69848044 |
G |
GT |
1bp_insertion | frameshift_variant | 2 | B40,B93 |
每个公开基因均提供参考注释对应的转录本序列;蛋白编码基因另提供 CDS 和蛋白序列。非编码 RNA 不适用 CDS 或蛋白下载。真实 accession 的版本后缀予以保留。
1 records
下载 cDNA FASTA1 records
下载 CDS FASTA1 records
下载 Protein FASTAupstream/downstream 最大各 10000 bp。负链基因会自动反向互补,使最终 FASTA 为转录方向 5′→3′。