当前解析结果
SmilChr02G004772| 统一新 Gene ID | SmilChr02G004772 |
|---|---|
| 名称 | SmilChr02G004772 |
| 描述 | ankyrin repeat domain-containing protein EMB506, chloroplastic-like |
| 染色体 / SeqID | Chr02 / NC_080388.1 |
| 坐标与链方向 | 69892135 - 69895808 / + |
| NCBI Gene ID | LOC131008721 |
|---|---|
| GeneID | 131008721 |
| locus_tag | - |
| NCBI Name | LOC131008721 |
| 原始查询 | SmilChr02G004772 |
| 来源 | GFF basic annotation; NCBI GO GAF; Pfam-A/HMMER; Arabidopsis/Rice homolog |
|---|---|
| 描述 | ankyrin repeat domain-containing protein EMB506, chloroplastic-like |
| 产物 | ankyrin repeat domain-containing protein EMB506%2C chloroplastic-like |
| Arabidopsis | AT5G40160 (EMB506)Ankyrin repeat family protein [Source:NCBI gene (formerly Entrezgene);Acc:834014] identity=58.3; qcov=0.792; evalue=1.27e-92; confidence=high |
| Rice | Os03g0135600- identity=42.9; qcov=0.567; evalue=2e-43; confidence=medium |
| GO | GO:0005515 (protein binding); GO:0009707 (chloroplast outer membrane); GO:0030941 (chloroplast targeting sequence receptor activity); GO:0045036 (protein targeting to chloroplast) |
| KEGG | - |
| Pfam | PF00023 (Ank); PF12796 (Ank_2); PF13606 (Ank_3); PF13637 (Ank_4); PF13857 (Ank_5) |
| InterPro | - |
| eggNOG | - |
| NR | GeneID:131008721 |
| Rank | 定位位置 | 中文 | Score | Protein ID |
|---|---|---|---|---|
| 1 | Chloroplast | 叶绿体 | 1.00000 | XP_057791720.1 |
| 2 | Chloroplast stroma | 叶绿体基质 | 0.80000 | XP_057791720.1 |
| 3 | Nucleus | 细胞核 | 0.00000 | XP_057791720.1 |
| 4 | Chromosome | 染色体 | 0.00000 | XP_057791720.1 |
| 5 | Centromere | 着丝粒 | 0.00000 | XP_057791720.1 |
下表显示该基因在丹参 EMS 材料中的前 12 个候选突变；完整结果可进入 EMS 突变库继续筛选或下载。
| 位置 | REF | ALT | 类型 | 影响 | 携带材料数 | 材料 |
|---|---|---|---|---|---|---|
Chr2:69892584 |
C |
T |
EMS_canonical_SNV | CDS_variant | 1 | C14 |
Chr2:69892742 |
G |
A |
EMS_canonical_SNV | CDS_variant | 1 | C67 |
Chr2:69892841 |
G |
A |
EMS_canonical_SNV | CDS_variant | 4 | B4,C43,C65,C67 |
Chr2:69892941 |
G |
A |
EMS_canonical_SNV | CDS_variant | 5 | B133,B31,B53,C24,C25 |
Chr2:69893922 |
G |
A |
EMS_canonical_SNV | CDS_variant | 2 | B25,D11 |
Chr2:69894041 |
C |
T |
EMS_canonical_SNV | CDS_variant | 2 | B37,C49 |
Chr2:69894082 |
G |
A |
EMS_canonical_SNV | CDS_variant | 1 | A21 |
Chr2:69894403 |
G |
A |
EMS_canonical_SNV | CDS_variant | 2 | B96,C85 |
Chr2:69894430 |
C |
T |
EMS_canonical_SNV | CDS_variant | 1 | D11 |
Chr2:69895532 |
GCT |
G |
2bp_deletion | frameshift_variant | 1 | B27 |
Chr2:69895532 |
GCT |
G |
2bp_deletion | CDS_variant | 1 | B27 |
Chr2:69895595 |
G |
GA |
1bp_insertion | frameshift_variant | 1 | B91 |
结构域结果来自 Pfam-A HMM 数据库和 HMMER hmmscan；位置为对应蛋白序列上的氨基酸坐标。
XP_057791720.1PF12796
Ank_2 150-219 aa
PF00023
Ank 188-219 aa
PF12796
Ank_2 204-285 aa
PF13857
Ank_5 208-262 aa
PF13606
Ank_3 221-250 aa
PF00023
Ank 221-252 aa
PF13637
Ank_4 235-274 aa
PF13857
Ank_5 254-294 aa
PF00023
Ank 255-286 aa
XP_057791721.1PF12796
Ank_2 150-219 aa
PF00023
Ank 188-219 aa
PF12796
Ank_2 205-277 aa
PF00023
Ank 221-243 aa
PF13857
Ank_5 245-286 aa
PF12796
Ank_2 246-303 aa
PF00023
Ank 247-278 aa
| Protein ID | 来源 | 结构域编号 | 结构域名称 | 类型 | 起始 aa | 终止 aa | E-value | Score | 说明 |
|---|---|---|---|---|---|---|---|---|---|
XP_057791720.1 |
Pfam | PF12796 |
Ank_2 | Repeat | 150 | 219 | 7.5e-28 | 97.7 | Ankyrin repeats (3 copies) |
XP_057791720.1 |
Pfam | PF00023 |
Ank | Repeat | 188 | 219 | 1.2e-28 | 98.2 | Ankyrin repeat |
XP_057791720.1 |
Pfam | PF12796 |
Ank_2 | Repeat | 204 | 285 | 7.5e-28 | 97.7 | Ankyrin repeats (3 copies) |
XP_057791720.1 |
Pfam | PF13857 |
Ank_5 | Repeat | 208 | 262 | 3.5e-22 | 78.9 | Ankyrin repeats (many copies) |
XP_057791720.1 |
Pfam | PF13606 |
Ank_3 | Repeat | 221 | 250 | 2e-16 | 58.9 | Ankyrin repeat |
XP_057791720.1 |
Pfam | PF00023 |
Ank | Repeat | 221 | 252 | 1.2e-28 | 98.2 | Ankyrin repeat |
XP_057791720.1 |
Pfam | PF13637 |
Ank_4 | Repeat | 235 | 274 | 6.8e-21 | 74.6 | Ankyrin repeats (many copies) |
XP_057791720.1 |
Pfam | PF13857 |
Ank_5 | Repeat | 254 | 294 | 3.5e-22 | 78.9 | Ankyrin repeats (many copies) |
XP_057791720.1 |
Pfam | PF00023 |
Ank | Repeat | 255 | 286 | 1.2e-28 | 98.2 | Ankyrin repeat |
XP_057791721.1 |
Pfam | PF12796 |
Ank_2 | Repeat | 150 | 219 | 6.2e-32 | 110.7 | Ankyrin repeats (3 copies) |
XP_057791721.1 |
Pfam | PF00023 |
Ank | Repeat | 188 | 219 | 6.9e-26 | 89.6 | Ankyrin repeat |
XP_057791721.1 |
Pfam | PF12796 |
Ank_2 | Repeat | 205 | 277 | 6.2e-32 | 110.7 | Ankyrin repeats (3 copies) |
XP_057791721.1 |
Pfam | PF00023 |
Ank | Repeat | 221 | 243 | 6.9e-26 | 89.6 | Ankyrin repeat |
XP_057791721.1 |
Pfam | PF13857 |
Ank_5 | Repeat | 245 | 286 | 3.1e-18 | 66.4 | Ankyrin repeats (many copies) |
XP_057791721.1 |
Pfam | PF12796 |
Ank_2 | Repeat | 246 | 303 | 6.2e-32 | 110.7 | Ankyrin repeats (3 copies) |
XP_057791721.1 |
Pfam | PF00023 |
Ank | Repeat | 247 | 278 | 6.9e-26 | 89.6 | Ankyrin repeat |
每个公开基因均提供参考注释对应的转录本序列；蛋白编码基因另提供 CDS 和蛋白序列。非编码 RNA 不适用 CDS 或蛋白下载。真实 accession 的版本后缀予以保留。
2 records
下载 cDNA FASTA2 records
下载 CDS FASTA2 records
下载 Protein FASTAupstream/downstream 最大各 10000 bp。负链基因会自动反向互补，使最终 FASTA 为转录方向 5′→3′。