当前解析结果
SmilChr02G004794| 统一新 Gene ID | SmilChr02G004794 |
|---|---|
| 名称 | SmilChr02G004794 |
| 描述 | pentatricopeptide repeat-containing protein At4g36680, mitochondrial |
| 染色体 / SeqID | Chr02 / NC_080388.1 |
| 坐标与链方向 | 70142479 - 70145543 / - |
| NCBI Gene ID | LOC131008786 |
|---|---|
| GeneID | 131008786 |
| locus_tag | - |
| NCBI Name | LOC131008786 |
| 原始查询 | SmilChr02G004794 |
| 来源 | GFF basic annotation; NCBI GO GAF; Pfam-A/HMMER; Arabidopsis/Rice homolog |
|---|---|
| 描述 | pentatricopeptide repeat-containing protein At4g36680, mitochondrial |
| 产物 | pentatricopeptide repeat-containing protein At4g36680%2C mitochondrial |
| Arabidopsis | AT4G36680 (AT4G36680)Tetratricopeptide repeat (TPR)-like superfamily protein [Source:NCBI gene (formerly Entrezgene);Acc:829821] identity=49.8; qcov=0.941; evalue=1.49e-137; confidence=high |
| Rice | Os02g0633200- identity=39.3; qcov=0.924; evalue=3.76e-75; confidence=medium |
| GO | GO:0005515 (protein binding) |
| KEGG | - |
| Pfam | PF01535 (PPR); PF12854 (PPR_1); PF13812 (PPR_3) |
| InterPro | - |
| eggNOG | - |
| NR | GeneID:131008786 |
| Rank | 定位位置 | 中文 | Score | Protein ID |
|---|---|---|---|---|
| 1 | Mitochondrion | 线粒体 | 1.00000 | XP_057791796.1 |
| 2 | Mitochondrion membrane | 线粒体膜 | 0.20000 | XP_057791796.1 |
| 3 | Nucleus | 细胞核 | 0.00000 | XP_057791796.1 |
| 4 | Chromosome | 染色体 | 0.00000 | XP_057791796.1 |
| 5 | Centromere | 着丝粒 | 0.00000 | XP_057791796.1 |
下表显示该基因在丹参 EMS 材料中的前 12 个候选突变；完整结果可进入 EMS 突变库继续筛选或下载。
| 位置 | REF | ALT | 类型 | 影响 | 携带材料数 | 材料 |
|---|---|---|---|---|---|---|
Chr2:70144112 |
C |
T |
EMS_canonical_SNV | CDS_variant | 1 | C28 |
Chr2:70144119 |
C |
T |
EMS_canonical_SNV | CDS_variant | 1 | C42 |
Chr2:70144190 |
G |
A |
EMS_canonical_SNV | CDS_variant | 1 | D11 |
Chr2:70144231 |
C |
T |
EMS_canonical_SNV | CDS_variant | 4 | A15,B103,B54,C16 |
Chr2:70144471 |
G |
A |
EMS_canonical_SNV | CDS_variant | 3 | B22,B99,C1 |
Chr2:70144678 |
C |
T |
EMS_canonical_SNV | CDS_variant | 1 | B93 |
Chr2:70144766 |
G |
A |
EMS_canonical_SNV | CDS_variant | 1 | C86 |
Chr2:70144945 |
C |
CTT |
2bp_insertion | frameshift_variant | 27 | A18,A23,B1,B106,B117,B12,B127,B133,B16,B19,B21,B24,B25,B48,B49,B55,B69,B71,B9,B92,C33,C36,C45,C48,C81,D11,D8 |
Chr2:70144961 |
G |
A |
EMS_canonical_SNV | CDS_variant | 5 | A15,B103,B54,C16,C42 |
Chr2:70144992 |
C |
T |
EMS_canonical_SNV | CDS_variant | 5 | B100,B112,B22,B38,B47 |
Chr2:70145033 |
AT |
A |
1bp_deletion | frameshift_variant | 7 | A14,B100,B139,B47,B74,C29,C37 |
Chr2:70145084 |
CG |
C |
1bp_deletion | frameshift_variant | 15 | A23,B106,B12,B133,B16,B25,B40,B48,B49,B55,B69,B71,C33,C45,D11 |
结构域结果来自 Pfam-A HMM 数据库和 HMMER hmmscan；位置为对应蛋白序列上的氨基酸坐标。
XP_057791796.1PF01535
PPR 107-133 aa
PF01535
PPR 175-204 aa
PF01535
PPR 210-238 aa
PF13812
PPR_3 236-288 aa
PF13812
PPR_3 266-302 aa
PF12854
PPR_1 273-300 aa
PF01535
PPR 279-304 aa
PF01535
PPR 316-341 aa
| Protein ID | 来源 | 结构域编号 | 结构域名称 | 类型 | 起始 aa | 终止 aa | E-value | Score | 说明 |
|---|---|---|---|---|---|---|---|---|---|
XP_057791796.1 |
Pfam | PF01535 |
PPR | Repeat | 107 | 133 | 1.1e-28 | 98.1 | PPR repeat |
XP_057791796.1 |
Pfam | PF01535 |
PPR | Repeat | 175 | 204 | 1.1e-28 | 98.1 | PPR repeat |
XP_057791796.1 |
Pfam | PF01535 |
PPR | Repeat | 210 | 238 | 1.1e-28 | 98.1 | PPR repeat |
XP_057791796.1 |
Pfam | PF13812 |
PPR_3 | Repeat | 236 | 288 | 1.6e-12 | 48.0 | Pentatricopeptide repeat domain |
XP_057791796.1 |
Pfam | PF13812 |
PPR_3 | Repeat | 266 | 302 | 1.6e-12 | 48.0 | Pentatricopeptide repeat domain |
XP_057791796.1 |
Pfam | PF12854 |
PPR_1 | Repeat | 273 | 300 | 4.1e-30 | 103.9 | PPR repeat |
XP_057791796.1 |
Pfam | PF01535 |
PPR | Repeat | 279 | 304 | 1.1e-28 | 98.1 | PPR repeat |
XP_057791796.1 |
Pfam | PF01535 |
PPR | Repeat | 316 | 341 | 1.1e-28 | 98.1 | PPR repeat |
每个公开基因均提供参考注释对应的转录本序列；蛋白编码基因另提供 CDS 和蛋白序列。非编码 RNA 不适用 CDS 或蛋白下载。真实 accession 的版本后缀予以保留。
1 records
下载 cDNA FASTA1 records
下载 CDS FASTA1 records
下载 Protein FASTAupstream/downstream 最大各 10000 bp。负链基因会自动反向互补，使最终 FASTA 为转录方向 5′→3′。