Gene Card 基因详情

支持统一新 ID、NCBI Gene ID、GeneID、locus_tag、Transcript ID、Protein ID，以及已人工核对的文献基因名查询。页面会先解析到丹参统一基因，再整合坐标、序列、注释、亚细胞定位、EMS 突变和下载入口。

当前解析结果

`SmilChr02G004799`

染色体: Chr02 坐标: 70188690-70195789 链方向: - 类型: protein_coding

基本信息

统一新 Gene ID	`SmilChr02G004799`
名称	SmilChr02G004799
描述	uncharacterized SmilChr02G004799
染色体 / SeqID	Chr02 / NC_080388.1
坐标与链方向	70188690 - 70195789 / `-`

ID 对照

NCBI Gene ID	`LOC131008789`
GeneID	`131008789`
locus_tag	`-`
NCBI Name	`LOC131008789`
原始查询	`SmilChr02G004799`

查看完整 ID 对照表

功能注释

来源	GFF basic annotation; NCBI GO GAF; Pfam-A/HMMER; Arabidopsis/Rice homolog
描述	Haloacid dehalogenase-like hydrolase (HAD) superfamily protein [Source:NCBI gene (formerly Entrezgene);Acc:822663]; symbol=AT3G29760; hit=AT3G29760; species=arabidopsis; confidence=low
产物	Haloacid dehalogenase-like hydrolase (HAD) superfamily protein [Source:NCBI gene (formerly Entrezgene);Acc:822663]; symbol=AT3G29760; hit=AT3G29760; species=arabidopsis; confidence=low
Arabidopsis	`AT3G29760` (AT3G29760) Haloacid dehalogenase-like hydrolase (HAD) superfamily protein [Source:NCBI gene (formerly Entrezgene);Acc:822663] identity=54.5; qcov=0.405; evalue=4.71e-72; confidence=low
Rice	`Os07g0109300` - identity=54.3; qcov=0.398; evalue=5.5e-69; confidence=low
GO	GO:0004721 (phosphoprotein phosphatase activity)
KEGG	-
Pfam	PF03031 (NIF)
InterPro	-
eggNOG	-
NR	GeneID:131008789

打开注释模块

亚细胞定位 Top 5

Rank	定位位置	中文	Score	Protein ID
1	Nucleus	细胞核	1.00000	`XP_057791799.1`
2	Chromosome	染色体	0.00000	`XP_057791799.1`
3	Centromere	着丝粒	0.00000	`XP_057791799.1`
4	Chromatin	染色质	0.00000	`XP_057791799.1`
5	Telomere	端粒	0.00000	`XP_057791799.1`

进入亚细胞定位查询

EMS 诱变突变

下表显示该基因在丹参 EMS 材料中的前 12 个候选突变；完整结果可进入 EMS 突变库继续筛选或下载。

位置	REF	ALT	类型	影响	携带材料数	材料
`Chr2:70189182`	`GC`	`G`	1bp_deletion	frameshift_variant	30	A6,B103,B123,B131,B136,B16,B20,B40,B48,B55,B80,B82,B88,B90,B91,B92,B96,C19,C20,C21,C33,C40,C49,C64,C66,C70,C73,C77,D8,D9
`Chr2:70189212`	`G`	`A`	EMS_canonical_SNV	CDS_variant	2	B125,B52
`Chr2:70190614`	`G`	`A`	EMS_canonical_SNV	CDS_variant	1	C19
`Chr2:70190752`	`G`	`A`	EMS_canonical_SNV	CDS_variant	5	B137,B29,B6,C52,C67
`Chr2:70190817`	`C`	`T`	EMS_canonical_SNV	CDS_variant	5	B109,B114,B95,C34,C86
`Chr2:70194040`	`G`	`A`	EMS_canonical_SNV	CDS_variant	1	B93
`Chr2:70194110`	`G`	`A`	EMS_canonical_SNV	CDS_variant	1	C8
`Chr2:70194447`	`C`	`T`	EMS_canonical_SNV	CDS_variant	1	B93

进入 EMS 突变库

预测功能结构域

结构域结果来自 Pfam-A HMM 数据库和 HMMER hmmscan；位置为对应蛋白序列上的氨基酸坐标。

XP_057791799.1

467 aa

234

467

NIF

PF03031 NIF 242-424 aa

XP_057791800.1

467 aa

234

467

NIF

PF03031 NIF 242-424 aa

XP_057791801.1

467 aa

234

467

NIF

PF03031 NIF 242-424 aa

Protein ID	来源	结构域编号	结构域名称	类型	起始 aa	终止 aa	E-value	Score	说明
`XP_057791799.1`	Pfam	`PF03031`	NIF	Family	242	424	1.8e-16	61.0	NLI interacting factor-like phosphatase
`XP_057791800.1`	Pfam	`PF03031`	NIF	Family	242	424	1.8e-16	61.0	NLI interacting factor-like phosphatase
`XP_057791801.1`	Pfam	`PF03031`	NIF	Family	242	424	1.8e-16	61.0	NLI interacting factor-like phosphatase

cDNA / CDS / Protein 序列

下载基因组 DNA（仅基因区域）

每个公开基因均提供参考注释对应的转录本序列；蛋白编码基因另提供 CDS 和蛋白序列。非编码 RNA 不适用 CDS 或蛋白下载。真实 accession 的版本后缀予以保留。

cDNA

3 records

下载 cDNA FASTA

XM_057935818.1
GAAGAAGGATTGATATTTGTCGAAAATGGAAACCTTCTACTTTTCAGTTTCCTTTTGTTTTGTCCCTACCAATACCAAACAAAGCTAAGTAAAAGTGTAATACAAGCGTCCTAGGTTACTCTTCTCTGCCGCACAACACAACCACACCCATTTCTTCTCTCTCTCTCACTCTCTCTGCTATTGCCAAGTTCTGCTTTCGCGGTGCATTGTTTTTCTGGGGTTATAGAACAAGAGTTATGATTCTGTAGGGGGTTGCTTCA...

XM_057935816.1
TGGAAACCTTCTACTTTTCAGTTTCCTTTTGTTTTGTCCCTACCAATACCAAACAAAGCTAAGTAAAAGTGTAATACAAGCGTCCTAGGTTACTCTTCTCTGCCGCACAACACAACCACACCCATTTCTTCTCTCTCTCTCACTCTCTCTGCTATTGCCAAGTTCTGCTTTCGCGGTATTTTTTCGATCTCTTTCAATTTGATTTCTTCTGCATCTCCTGTGCTGCATTTCTGTAAAATTGCGAATGTTCTGGAATACGA...

CDS

3 records

下载 CDS FASTA

LOC131008789
ATGAACTCTGTCCAAGGTGGGGCTGAATCAATTAGCTGCAATGTCAATATGAGTCTGGCTCAGGAAAAGAATGACATCGTTGGGAATAAGGAGATTCGTGAAGATGCAAAGGATATAGTTACTTATCAACCGAGGAAAAGACTGAAGAAGGCAGACCTATCTGATCTTCCAAGAACAGATCTTGAATCTTTCAGTGAGGGGGATGATTTATCCTTGGGTAATGTGAGCCAAATTATCGAAAATCATTCTTTGGTTCAGCC...

Protein

3 records

下载 Protein FASTA

XP_057791799.1
MNSVQGGAESISCNVNMSLAQEKNDIVGNKEIREDAKDIVTYQPRKRLKKADLSDLPRTDLESFSEGDDLSLGNVSQIIENHSLVQPIEFKSVPHRFSSSMSEKTEVFEDGISAGVAMSEKKEAFEDGISAEVVQMSLDESLHCSSEILNTSLNNSTHAMMKSKSCDAGMPVSDHLEELHDEAKEITSVVDGDASGEVTPLYHEEQSVASHDDLSLDDTQGVVCETIIVPVDRAFTGYMQKKLLVLDLNGLLLDICSFVP...

XP_057791800.1
MNSVQGGAESISCNVNMSLAQEKNDIVGNKEIREDAKDIVTYQPRKRLKKADLSDLPRTDLESFSEGDDLSLGNVSQIIENHSLVQPIEFKSVPHRFSSSMSEKTEVFEDGISAGVAMSEKKEAFEDGISAEVVQMSLDESLHCSSEILNTSLNNSTHAMMKSKSCDAGMPVSDHLEELHDEAKEITSVVDGDASGEVTPLYHEEQSVASHDDLSLDDTQGVVCETIIVPVDRAFTGYMQKKLLVLDLNGLLLDICSFVP...

上下游序列下载

upstream/downstream 最大各 10000 bp。负链基因会自动反向互补，使最终 FASTA 为转录方向 5′→3′。

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