Gene Card 基因详情

支持统一新 ID、NCBI Gene ID、GeneID、locus_tag、Transcript ID、Protein ID，以及已人工核对的文献基因名查询。页面会先解析到丹参统一基因，再整合坐标、序列、注释、亚细胞定位、EMS 突变和下载入口。

当前解析结果

`SmilChr02G004801`

染色体: Chr02 坐标: 70197661-70200556 链方向: - 类型: protein_coding

基本信息

统一新 Gene ID	`SmilChr02G004801`
名称	SmilChr02G004801
描述	uncharacterized SmilChr02G004801
染色体 / SeqID	Chr02 / NC_080388.1
坐标与链方向	70197661 - 70200556 / `-`

ID 对照

NCBI Gene ID	`LOC131008792`
GeneID	`131008792`
locus_tag	`-`
NCBI Name	`LOC131008792`
原始查询	`SmilChr02G004801`

查看完整 ID 对照表

功能注释

来源	GFF basic annotation; NCBI GO GAF; Pfam-A/HMMER; Arabidopsis/Rice homolog
描述	Protein kinase superfamily protein [Source:NCBI gene (formerly Entrezgene);Acc:832680]; symbol=AT5G26110; hit=AT5G26110; species=arabidopsis; confidence=high
产物	Protein kinase superfamily protein [Source:NCBI gene (formerly Entrezgene);Acc:832680]; symbol=AT5G26110; hit=AT5G26110; species=arabidopsis; confidence=high
Arabidopsis	`AT5G26110` (AT5G26110) Protein kinase superfamily protein [Source:NCBI gene (formerly Entrezgene);Acc:832680] identity=84.3; qcov=0.956; evalue=4.17e-137; confidence=high
Rice	`-` -
GO	GO:0000408 (EKC/KEOPS complex); GO:0004674 (protein serine/threonine kinase activity); GO:0005524 (ATP binding); GO:0005634 (nucleus); GO:0005829 (cytosol); GO:0006468 (protein phosphorylation); GO:0070525 (tRNA threonylcarbamoyladenosine metabolic process)
KEGG	-
Pfam	PF00069 (Pkinase); PF01163 (RIO1); PF03109 (ABC1); PF06293 (Kdo); PF07714 (PK_Tyr_Ser-Thr)
InterPro	-
eggNOG	-
NR	GeneID:131008792

打开注释模块

亚细胞定位 Top 5

Rank	定位位置	中文	Score	Protein ID
1	Cytoplasm	细胞质	1.00000	`XP_057791806.1`
2	Cytosol	细胞质基质	1.00000	`XP_057791806.1`
3	Nucleus	细胞核	0.20000	`XP_057791806.1`
4	Chromosome	染色体	0.00000	`XP_057791806.1`
5	Centromere	着丝粒	0.00000	`XP_057791806.1`

进入亚细胞定位查询

EMS 诱变突变

下表显示该基因在丹参 EMS 材料中的前 12 个候选突变；完整结果可进入 EMS 突变库继续筛选或下载。

位置	REF	ALT	类型	影响	携带材料数	材料
`Chr2:70198182`	`G`	`A`	EMS_canonical_SNV	CDS_variant	3	B78,C48,C8
`Chr2:70198680`	`G`	`A`	EMS_canonical_SNV	CDS_variant	1	C12
`Chr2:70198828`	`G`	`A`	EMS_canonical_SNV	CDS_variant	1	B138
`Chr2:70198868`	`C`	`T`	EMS_canonical_SNV	CDS_variant	4	B106,B112,B132,B5
`Chr2:70198916`	`C`	`T`	EMS_canonical_SNV	CDS_variant	1	B104
`Chr2:70198937`	`C`	`T`	EMS_canonical_SNV	CDS_variant	1	B93
`Chr2:70199157`	`C`	`T`	EMS_canonical_SNV	CDS_variant	3	A20,A24,C59

进入 EMS 突变库

预测功能结构域

结构域结果来自 Pfam-A HMM 数据库和 HMMER hmmscan；位置为对应蛋白序列上的氨基酸坐标。

XP_057791806.1

226 aa

113

226

RIO1

PK_Tyr_Ser-Thr

Pkinase

ABC1

Kdo

PF01163 RIO1 31-163 aa PF07714 PK_Tyr_Ser-Thr 57-162 aa PF00069 Pkinase 58-162 aa PF03109 ABC1 85-160 aa PF06293 Kdo 115-183 aa

XP_057791807.1

226 aa

113

226

RIO1

PK_Tyr_Ser-Thr

Pkinase

ABC1

Kdo

PF01163 RIO1 31-163 aa PF07714 PK_Tyr_Ser-Thr 57-162 aa PF00069 Pkinase 58-162 aa PF03109 ABC1 85-160 aa PF06293 Kdo 115-183 aa

XP_057791808.1

226 aa

113

226

RIO1

PK_Tyr_Ser-Thr

Pkinase

ABC1

Kdo

PF01163 RIO1 31-163 aa PF07714 PK_Tyr_Ser-Thr 57-162 aa PF00069 Pkinase 58-162 aa PF03109 ABC1 85-160 aa PF06293 Kdo 115-183 aa

Protein ID	来源	结构域编号	结构域名称	类型	起始 aa	终止 aa	E-value	Score	说明
`XP_057791806.1`	Pfam	`PF01163`	RIO1	Domain	31	163	5.7e-07	30.1	RIO domain
`XP_057791806.1`	Pfam	`PF07714`	PK_Tyr_Ser-Thr	Domain	57	162	2.7e-06	27.6	Protein tyrosine and serine/threonine kinase
`XP_057791806.1`	Pfam	`PF00069`	Pkinase	Domain	58	162	1.1e-09	38.8	Protein kinase domain
`XP_057791806.1`	Pfam	`PF03109`	ABC1	Domain	85	160	1.2e-05	25.3	ABC1 atypical kinase-like domain
`XP_057791806.1`	Pfam	`PF06293`	Kdo	Family	115	183	2.1e-07	31.3	Lipopolysaccharide kinase (Kdo/WaaP) family
`XP_057791807.1`	Pfam	`PF01163`	RIO1	Domain	31	163	5.7e-07	30.1	RIO domain
`XP_057791807.1`	Pfam	`PF07714`	PK_Tyr_Ser-Thr	Domain	57	162	2.7e-06	27.6	Protein tyrosine and serine/threonine kinase
`XP_057791807.1`	Pfam	`PF00069`	Pkinase	Domain	58	162	1.1e-09	38.8	Protein kinase domain
`XP_057791807.1`	Pfam	`PF03109`	ABC1	Domain	85	160	1.2e-05	25.3	ABC1 atypical kinase-like domain
`XP_057791807.1`	Pfam	`PF06293`	Kdo	Family	115	183	2.1e-07	31.3	Lipopolysaccharide kinase (Kdo/WaaP) family
`XP_057791808.1`	Pfam	`PF01163`	RIO1	Domain	31	163	5.7e-07	30.1	RIO domain
`XP_057791808.1`	Pfam	`PF07714`	PK_Tyr_Ser-Thr	Domain	57	162	2.7e-06	27.6	Protein tyrosine and serine/threonine kinase
`XP_057791808.1`	Pfam	`PF00069`	Pkinase	Domain	58	162	1.1e-09	38.8	Protein kinase domain
`XP_057791808.1`	Pfam	`PF03109`	ABC1	Domain	85	160	1.2e-05	25.3	ABC1 atypical kinase-like domain
`XP_057791808.1`	Pfam	`PF06293`	Kdo	Family	115	183	2.1e-07	31.3	Lipopolysaccharide kinase (Kdo/WaaP) family

cDNA / CDS / Protein 序列

下载基因组 DNA（仅基因区域）

每个公开基因均提供参考注释对应的转录本序列；蛋白编码基因另提供 CDS 和蛋白序列。非编码 RNA 不适用 CDS 或蛋白下载。真实 accession 的版本后缀予以保留。

cDNA

3 records

下载 cDNA FASTA

XM_057935823.1
TACACTTTGTTCTATACTAGAAGAAGTCAGACCTTCACTCGGCCACTCGTTTGGAAACCCTTCTTCTCTGCCGCCGCTGCCGTGTGCCGCGCCCACCCCGCCGTGTCCCTGCCGCTGCTTTCGCTCTCCATCCAAGCCATACCATCAACCCTATATTGACATCTGAATTGCTGTATTTTTCACTATGGAGATGAAGTTAGAGGGAATAGAAGGATCCTTGGTTTTGATTAAGCAAGGCGCTGAGGCTAGGGTGTTTGAGT...

XM_057935825.1
TGTTCTATACTAGAAGAAGTCAGACCTTCACTCGGCCACTCGTTTGGAAACCCTTCTTCTCTGCCGCCGCTGCCGTGTGCCGCGCCCACCCCGCCGTGTCCCTGCCGCTGCTTTCGCTCTCCATCCAAGACTTTCTATGTTTCCAGATGAGTGACCTTAAGTTTTAATTCTCTTTTCCAGCCATACCATCAACCCTATATTGACATCTGAATTGCTGTATTTTTCACTATGGAGATGAAGTTAGAGGGAATAGAAGGATC...

CDS

3 records

下载 CDS FASTA

LOC131008792
ATGGAGATGAAGTTAGAGGGAATAGAAGGATCCTTGGTTTTGATTAAGCAAGGCGCTGAGGCTAGGGTGTTTGAGTCGACTTTTGTTGGTAGAAGGTCTATCGTTAAGGAACGGTTTCCAAAAAAATATCGGCATCCATTTTTGGACTCAAAGCTAACTCTCAAACGTCTTAATGCGGAAGCTCGGTGCTTGACAAAAGCTAGAAAGCTTGGGGTTTCCACTCCGGCGCTCTATGCTGTCGATCCCTTGCTACATACTCT...

Protein

3 records

下载 Protein FASTA

XP_057791806.1
MEMKLEGIEGSLVLIKQGAEARVFESTFVGRRSIVKERFPKKYRHPFLDSKLTLKRLNAEARCLTKARKLGVSTPALYAVDPLLHTLTFEYVEGPAVKDVLLDFGLHGIVEERLDDIATQIGDAIGKLHDGGLIHGDLTTSNMLVRHGTNKLALIDFGLSFTSTLPEDKAVDLYVLERALISMHSSCGNVMERILAAYKKSSKQWSSTLNKLAQVRQRGRKRTMIG

XP_057791807.1
MEMKLEGIEGSLVLIKQGAEARVFESTFVGRRSIVKERFPKKYRHPFLDSKLTLKRLNAEARCLTKARKLGVSTPALYAVDPLLHTLTFEYVEGPAVKDVLLDFGLHGIVEERLDDIATQIGDAIGKLHDGGLIHGDLTTSNMLVRHGTNKLALIDFGLSFTSTLPEDKAVDLYVLERALISMHSSCGNVMERILAAYKKSSKQWSSTLNKLAQVRQRGRKRTMIG

上下游序列下载

upstream/downstream 最大各 10000 bp。负链基因会自动反向互补，使最终 FASTA 为转录方向 5′→3′。

下载 upstream 下载 downstream 下载 upstream + gene + downstream

JBrowse

跳转到基因组浏览器