Gene Card 基因详情

支持统一新 ID、NCBI Gene ID、GeneID、locus_tag、Transcript ID、Protein ID，以及已人工核对的文献基因名查询。页面会先解析到丹参统一基因，再整合坐标、序列、注释、亚细胞定位、EMS 突变和下载入口。

当前解析结果

`SmilChr02G004804`

染色体: Chr02 坐标: 70217075-70221095 链方向: - 类型: protein_coding

基本信息

统一新 Gene ID	`SmilChr02G004804`
名称	SmilChr02G004804
描述	RHOMBOID-like protein 12, mitochondrial
染色体 / SeqID	Chr02 / NC_080388.1
坐标与链方向	70217075 - 70221095 / `-`

ID 对照

NCBI Gene ID	`LOC131008798`
GeneID	`131008798`
locus_tag	`-`
NCBI Name	`LOC131008798`
原始查询	`SmilChr02G004804`

查看完整 ID 对照表

功能注释

来源	GFF basic annotation; NCBI GO GAF; Pfam-A/HMMER; Arabidopsis/Rice homolog
描述	RHOMBOID-like protein 12, mitochondrial
产物	RHOMBOID-like protein 12%2C mitochondrial
Arabidopsis	`AT1G18600` (RBL12) RHOMBOID-like protein 12 [Source:NCBI gene (formerly Entrezgene);Acc:838441] identity=54.6; qcov=0.907; evalue=2.17e-73; confidence=high
Rice	`Os01g0763100` (OsRhmbd4) - identity=56; qcov=0.885; evalue=5.52e-65; confidence=high
GO	GO:0004252 (serine-type endopeptidase activity); GO:0016020 (membrane)
KEGG	-
Pfam	PF01694 (Rhomboid)
InterPro	-
eggNOG	-
NR	GeneID:131008798

打开注释模块

亚细胞定位 Top 5

Rank	定位位置	中文	Score	Protein ID
1	Mitochondrion	线粒体	1.00000	`XP_057791827.1`
2	Mitochondrion membrane	线粒体膜	1.00000	`XP_057791827.1`
3	Mitochondrion inner membrane	线粒体内膜	1.00000	`XP_057791827.1`
4	Nucleus	细胞核	0.00000	`XP_057791827.1`
5	Chromosome	染色体	0.00000	`XP_057791827.1`

进入亚细胞定位查询

EMS 诱变突变

下表显示该基因在丹参 EMS 材料中的前 12 个候选突变；完整结果可进入 EMS 突变库继续筛选或下载。

位置	REF	ALT	类型	影响	携带材料数	材料
`Chr2:70217680`	`AG`	`A`	1bp_deletion	frameshift_variant	14	B10,B100,B108,B114,B13,B139,B49,B50,B77,C34,C52,C78,C79,C87
`Chr2:70217711`	`AAG`	`A`	2bp_deletion	frameshift_variant	13	B100,B108,B13,B139,B49,B50,B77,C34,C52,C78,C79,C87,D3
`Chr2:70218018`	`G`	`A`	EMS_canonical_SNV	CDS_variant	2	B39,B45
`Chr2:70218395`	`G`	`A`	EMS_canonical_SNV	CDS_variant	1	C85
`Chr2:70218498`	`C`	`T`	EMS_canonical_SNV	CDS_variant	1	C85
`Chr2:70218651`	`G`	`A`	EMS_canonical_SNV	CDS_variant	5	B10,B133,B8,B81,D3
`Chr2:70218867`	`G`	`A`	EMS_canonical_SNV	CDS_variant	3	B122,B125,B52
`Chr2:70220672`	`G`	`A`	EMS_canonical_SNV	CDS_variant	1	D11
`Chr2:70220704`	`C`	`T`	EMS_canonical_SNV	CDS_variant	1	D11

进入 EMS 突变库

预测功能结构域

结构域结果来自 Pfam-A HMM 数据库和 HMMER hmmscan；位置为对应蛋白序列上的氨基酸坐标。

XP_057791827.1

323 aa

162

323

Rhomboid

PF01694 Rhomboid 160-311 aa

XP_057791828.1

226 aa

113

226

Rhomboid

PF01694 Rhomboid 63-214 aa

Protein ID	来源	结构域编号	结构域名称	类型	起始 aa	终止 aa	E-value	Score	说明
`XP_057791827.1`	Pfam	`PF01694`	Rhomboid	Domain	160	311	2.5e-22	80.3	Rhomboid domain
`XP_057791828.1`	Pfam	`PF01694`	Rhomboid	Domain	63	214	9.2e-23	81.7	Rhomboid domain

cDNA / CDS / Protein 序列

下载基因组 DNA（仅基因区域）

每个公开基因均提供参考注释对应的转录本序列；蛋白编码基因另提供 CDS 和蛋白序列。非编码 RNA 不适用 CDS 或蛋白下载。真实 accession 的版本后缀予以保留。

cDNA

2 records

下载 cDNA FASTA

XM_057935844.1
TATTTTAATTGGATAATATAAAAAAATATAATATAAAATATACACATGATTTGGGATACTTAAATAAAAAATAAACAAAAATATTAAAAATAACTCCAAAAATTATAAGGTAATTTGACGGAAAAACATCACTTAATATAAATGATTATGATCAGTTATTACTATTCAGAATAGAAAAGGTTTTTATTTATATGTATATATATATATTTATACTTTAAATATGATTTTTTTTTTTAATTTAGGCCATCTATAAAGAGGGA...

XM_057935845.1
AAAAGAGAGTCTGTTACCTAAAAGAGAGCAGAGAATCAAGAGAGTGAAAAATGCGAAGGCAGCTGGGCGTGGGGCTGCTTACTAAAATCGCAAGAAATGGCCCTTCGATCAACTTAATATCGCCAAAATCTGTGTCTCCCTCCTCATTCCTCATCCCATTTTATCGTCGCTCTCTCTCCGAGTATTCCACGCTTTCACGTTCCCATTTATGGAAACTATGCTGTCCCAATGGCCTTAGAGGGACCATCCAAAATGGGGCT...

CDS

2 records

下载 CDS FASTA

LOC131008798
ATGCGAAGGCAGCTGGGCGTGGGGCTGCTTACTAAAATCGCAAGAAATGGCCCTTCGATCAACTTAATATCGCCAAAATCTGTGTCTCCCTCCTCATTCCTCATCCCATTTTATCGTCGCTCTCTCTCCGAGTATTCCACGCTTTCACGTTCCCATTTATGGAAACTATGCTGTCCCAATGGCCTTAGAGGGACCATCCAAAATGGGGCTTTTCCCACTTCACTTGTCGCAACAAGGGTTTTTTCGAGCGCCCTTTTGCA...

LOC131008798
ATGTATTGGCCGAGTTTAGCCTCTTCCATCCTGCAGAATGAGAGATCATTTTTCAGAAGGCTTACAACCGACGGAGTTTTGTGGGGATTGATAATGACGAATGTTGCTGTCTTTATGTTATGGAATGTTGCAGACACAAAGTTTATGGTGAAGAATTTTATGATTTCTGTAGAAAACATCAAACATGGCCAGCTTCACACGATGATAACCAATGCATTCAGTCATAGAGATGCGTTTCACCTCTTTTCAAATATGGTCGG...

Protein

2 records

下载 Protein FASTA

XP_057791827.1
MRRQLGVGLLTKIARNGPSINLISPKSVSPSSFLIPFYRRSLSEYSTLSRSHLWKLCCPNGLRGTIQNGAFPTSLVATRVFSSALLQGRGKFPVTFRNRRSLASFSLDSRRRSFFRRLTTDGVLWGLIMTNVAVFMLWNVADTKFMVKNFMISVENIKHGQLHTMITNAFSHRDAFHLFSNMVGLYFFGSSIGQTFGPQYLLKLYLGGAIAGSIFYLVYQAFIAPSVESKPGRLSHSQVPALGASAALNAIILLNILLYP...

XP_057791828.1
MYWPSLASSILQNERSFFRRLTTDGVLWGLIMTNVAVFMLWNVADTKFMVKNFMISVENIKHGQLHTMITNAFSHRDAFHLFSNMVGLYFFGSSIGQTFGPQYLLKLYLGGAIAGSIFYLVYQAFIAPSVESKPGRLSHSQVPALGASAALNAIILLNILLYPTSTIYLEFFVPVPAYLVGVFLIGNDMWKVWKGNTEISGASHLGGAAAGALAWLSKRKGRFGRF

上下游序列下载

upstream/downstream 最大各 10000 bp。负链基因会自动反向互补，使最终 FASTA 为转录方向 5′→3′。

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