Gene Card 基因详情

支持统一新 ID、NCBI Gene ID、GeneID、locus_tag、Transcript ID、Protein ID，以及已人工核对的文献基因名查询。页面会先解析到丹参统一基因，再整合坐标、序列、注释、亚细胞定位、EMS 突变和下载入口。

当前解析结果

`SmilChr02G004806`

染色体: Chr02 坐标: 70225492-70230693 链方向: - 类型: protein_coding

基本信息

统一新 Gene ID	`SmilChr02G004806`
名称	SmilChr02G004806
描述	RHOMBOID-like protein 12, mitochondrial
染色体 / SeqID	Chr02 / NC_080388.1
坐标与链方向	70225492 - 70230693 / `-`

ID 对照

NCBI Gene ID	`LOC131008794`
GeneID	`131008794`
locus_tag	`-`
NCBI Name	`LOC131008794`
原始查询	`SmilChr02G004806`

查看完整 ID 对照表

功能注释

来源	GFF basic annotation; NCBI GO GAF; Pfam-A/HMMER; Arabidopsis/Rice homolog
描述	RHOMBOID-like protein 12, mitochondrial
产物	RHOMBOID-like protein 12%2C mitochondrial
Arabidopsis	`AT1G18600` (RBL12) RHOMBOID-like protein 12 [Source:NCBI gene (formerly Entrezgene);Acc:838441] identity=52.3; qcov=0.368; evalue=5.66e-33; confidence=low
Rice	`Os01g0763100` (OsRhmbd4) - identity=44.7; qcov=0.446; evalue=1.15e-29; confidence=low
GO	GO:0004252 (serine-type endopeptidase activity); GO:0016020 (membrane)
KEGG	-
Pfam	PF01694 (Rhomboid)
InterPro	-
eggNOG	-
NR	GeneID:131008794

打开注释模块

亚细胞定位 Top 5

Rank	定位位置	中文	Score	Protein ID
1	Mitochondrion	线粒体	1.00000	`XP_057791811.1`
2	Mitochondrion membrane	线粒体膜	1.00000	`XP_057791811.1`
3	Mitochondrion inner membrane	线粒体内膜	1.00000	`XP_057791812.1`
4	Nucleus	细胞核	0.00000	`XP_057791811.1`
5	Chromosome	染色体	0.00000	`XP_057791811.1`

进入亚细胞定位查询

EMS 诱变突变

下表显示该基因在丹参 EMS 材料中的前 12 个候选突变；完整结果可进入 EMS 突变库继续筛选或下载。

位置	REF	ALT	类型	影响	携带材料数	材料
`Chr2:70225682`	`GC`	`G`	1bp_deletion	frameshift_variant	23	A25,A3,A5,B103,B105,B127,B128,B137,B49,B74,B8,B88,B92,C18,C23,C31,C44,C51,C62,C71,C77,D1,D6
`Chr2:70225730`	`TC`	`T`	1bp_deletion	frameshift_variant	1	B12
`Chr2:70225730`	`TC`	`T`	1bp_deletion	CDS_variant	1	B12
`Chr2:70225743`	`C`	`T`	EMS_canonical_SNV	CDS_variant	5	A21,B1,B54,B91,C29
`Chr2:70225760`	`G`	`A`	EMS_canonical_SNV	CDS_variant	1	C44
`Chr2:70225763`	`C`	`CTT`	2bp_insertion	frameshift_variant	1	B55
`Chr2:70225763`	`C`	`CTT`	2bp_insertion	CDS_variant	1	B55
`Chr2:70225764`	`TTC`	`T`	2bp_deletion	frameshift_variant	94	A11,A16,A19,A2,A23,A25,A3,A6,A8,A9,B1,B10,B101,B102,B106,B107,B112,B113,B115,B12,B121,B122,B124,B127,B133,B136,B137,B15,B16,B17,B18,B2,B24,B25,B27,B29,B33,B34,B35,B36,B38,B39,B47,B51,B52,B58,B6,B64,B65,B68,B70,B75,B80,B82,B84,B85,B86,B87,B90,B91,B92,B96,B97,C12,C13,C21,C24,C25,C27,C3,C30,C36,C42,C48,C49,C5,C52,C55,C56,C57,C65,C67,C7,C71,C74,C8,C81,C82,C83,C84,C85,C87,D5,D7
`Chr2:70225767`	`T`	`TCC`	2bp_insertion	frameshift_variant	14	A2,A3,B106,B127,B25,B34,B51,B58,B97,C13,C42,C74,C81,C83
`Chr2:70225773`	`T`	`TCG`	2bp_insertion	frameshift_variant	3	B90,B92,C87
`Chr2:70225773`	`T`	`TCG`	2bp_insertion	CDS_variant	3	B90,B92,C87
`Chr2:70225784`	`TA`	`T`	1bp_deletion	frameshift_variant	17	A22,B132,B14,B30,B37,B50,B55,B6,B66,B67,B72,B87,B98,C1,C41,C54,C79

进入 EMS 突变库

预测功能结构域

结构域结果来自 Pfam-A HMM 数据库和 HMMER hmmscan；位置为对应蛋白序列上的氨基酸坐标。

XP_057791811.1

337 aa

168

337

Rhomboid

PF01694 Rhomboid 166-264 aa

XP_057791812.1

336 aa

168

336

Rhomboid

PF01694 Rhomboid 166-328 aa

XP_057791813.1

303 aa

152

303

Rhomboid

PF01694 Rhomboid 166-264 aa

XP_057791814.1

298 aa

149

298

Rhomboid

PF01694 Rhomboid 166-228 aa

XP_057791815.1

296 aa

148

296

Rhomboid

PF01694 Rhomboid 166-228 aa

XP_057791816.1

296 aa

148

296

Rhomboid

PF01694 Rhomboid 166-228 aa

XP_057791817.1

296 aa

148

296

Rhomboid

PF01694 Rhomboid 166-228 aa

Protein ID	来源	结构域编号	结构域名称	类型	起始 aa	终止 aa	E-value	Score	说明
`XP_057791811.1`	Pfam	`PF01694`	Rhomboid	Domain	166	264	4.3e-15	56.9	Rhomboid domain
`XP_057791812.1`	Pfam	`PF01694`	Rhomboid	Domain	166	328	1.9e-17	64.5	Rhomboid domain
`XP_057791813.1`	Pfam	`PF01694`	Rhomboid	Domain	166	264	3.3e-15	57.2	Rhomboid domain
`XP_057791814.1`	Pfam	`PF01694`	Rhomboid	Domain	166	228	2.7e-13	51.0	Rhomboid domain
`XP_057791815.1`	Pfam	`PF01694`	Rhomboid	Domain	166	228	2.7e-13	51.1	Rhomboid domain
`XP_057791816.1`	Pfam	`PF01694`	Rhomboid	Domain	166	228	2.7e-13	51.1	Rhomboid domain
`XP_057791817.1`	Pfam	`PF01694`	Rhomboid	Domain	166	228	2.7e-13	51.1	Rhomboid domain

cDNA / CDS / Protein 序列

下载基因组 DNA（仅基因区域）

每个公开基因均提供参考注释对应的转录本序列；蛋白编码基因另提供 CDS 和蛋白序列。非编码 RNA 不适用 CDS 或蛋白下载。真实 accession 的版本后缀予以保留。

cDNA

8 records

下载 cDNA FASTA

XR_009096353.1
ATTTATACTTTAAAATGAATTTTTTAATTTAGGTCATCTATAAAGAGGGAGAGAAAGAATGAAGAGAGCGTGTTACCCAAGACTCAAAGAGAGCAGAGAATCAAGAGAGTGAAAAATGCGAAGGCAGCTGGGCGTTGGGCTGCTTACTAAAATCGCAAGAAATGGCCCTTCGATCAACGTAATATCGCCAAAATCTGCGTCTCTCTCCTCATTCCTCAACCCCAATTCCACCCCATTTCATCATCGCTCTCTCTTGAAGT...

XM_057935828.1
ATACTTTAAAATGAATTTTTTAATTTAGGTCATCTATAAAGAGGGAGAGAAAGAATGAAGAGAGCGTGTTACCCAAGACTCAAAGAGAGCAGAGAATCAAGAGAGTGAAAAATGCGAAGGCAGCTGGGCGTTGGGCTGCTTACTAAAATCGCAAGAAATGGCCCTTCGATCAACGTAATATCGCCAAAATCTGCGTCTCTCTCCTCATTCCTCAACCCCAATTCCACCCCATTTCATCATCGCTCTCTCTTGAAGTATTC...

CDS

7 records

下载 CDS FASTA

LOC131008794
ATGCGAAGGCAGCTGGGCGTTGGGCTGCTTACTAAAATCGCAAGAAATGGCCCTTCGATCAACGTAATATCGCCAAAATCTGCGTCTCTCTCCTCATTCCTCAACCCCAATTCCACCCCATTTCATCATCGCTCTCTCTTGAAGTATTCCACGCTTTCACGTTCTCACCTATGGAAAATATGCAGTCCCAATGGCCTTAGAGGGAGCATCCAAAATGGGGCTTTTCCCACTTCACTTGTCGCAACAAGGTTTTTTTCCAA...

Protein

7 records

下载 Protein FASTA

XP_057791811.1
MRRQLGVGLLTKIARNGPSINVISPKSASLSSFLNPNSTPFHHRSLLKYSTLSRSHLWKICSPNGLRGSIQNGAFPTSLVATRFFSNALLQGRPKFPVTFLNRRSLSSFSPDSRWISFFRRFIPDRCVVLMIVTNTAVFMLWKVADTDFMIKNFMISVQHIKCGLLYTFITSAFSHIKTDHLIANMLIFSIFGTRIARKFGPQYLLKLYLGGATAGSIFYLVFQAFVAPSVEVERPEISHSDVSALGASAAVNAIVLLDV...

XP_057791812.1
MRRQLGVGLLTKIARNGPSINVISPKSASLSSFLNPNSTPFHHRSLLKYSTLSRSHLWKICSPNGLRGSIQNGAFPTSLVATRFFSNALLQGRPKFPVTFLNRRSLSSFSPDSRWISFFRRFIPDRCVVLMIVTNTAVFMLWKVADTDFMIKNFMISVQHIKCGLLYTFITSAFSHIKTDHLIANMLIFSIFGTRIARKFGPQYLLKLYLGGATAGSIFYLVFQAFVAPSVEVERPEISHSDVSALGASAAVNAIVLLDV...

上下游序列下载

upstream/downstream 最大各 10000 bp。负链基因会自动反向互补，使最终 FASTA 为转录方向 5′→3′。

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