当前解析结果
SmilChr02G004821| 统一新 Gene ID | SmilChr02G004821 |
|---|---|
| 名称 | SmilChr02G004821 |
| 描述 | probable disease resistance protein At4g27220 |
| 染色体 / SeqID | Chr02 / NC_080388.1 |
| 坐标与链方向 | 70323658 - 70328578 / + |
| NCBI Gene ID | LOC131008812 |
|---|---|
| GeneID | 131008812 |
| locus_tag | - |
| NCBI Name | LOC131008812 |
| 原始查询 | SmilChr02G004821 |
| 来源 | GFF basic annotation; NCBI GO GAF; Pfam-A/HMMER; Arabidopsis/Rice homolog |
|---|---|
| 描述 | probable disease resistance protein At4g27220 |
| 产物 | probable disease resistance protein At4g27220 |
| Arabidopsis | AT4G10780 (AT4G10780)LRR and NB-ARC domains-containing disease resistance protein [Source:NCBI gene (formerly Entrezgene);Acc:826674] identity=33.1; qcov=0.644; evalue=3e-84; confidence=low |
| Rice | Os01g0788500- identity=32.7; qcov=0.493; evalue=4.76e-57; confidence=low |
| GO | GO:0005515 (protein binding); GO:0043531 (ADP binding) |
| KEGG | - |
| Pfam | PF00931 (NB-ARC); PF13401 (AAA_22); PF13855 (LRR_8); PF23247 (LRR_RPS2); PF23559 (WHD_DRP) |
| InterPro | - |
| eggNOG | - |
| NR | GeneID:131008812 |
| Rank | 定位位置 | 中文 | Score | Protein ID |
|---|---|---|---|---|
| 1 | Cell membrane | 细胞膜 | 1.00000 | XP_057791849.1 |
| 2 | Nucleus | 细胞核 | 0.00000 | XP_057791849.1 |
| 3 | Chromosome | 染色体 | 0.00000 | XP_057791849.1 |
| 4 | Centromere | 着丝粒 | 0.00000 | XP_057791849.1 |
| 5 | Chromatin | 染色质 | 0.00000 | XP_057791849.1 |
下表显示该基因在丹参 EMS 材料中的前 12 个候选突变；完整结果可进入 EMS 突变库继续筛选或下载。
| 位置 | REF | ALT | 类型 | 影响 | 携带材料数 | 材料 |
|---|---|---|---|---|---|---|
Chr2:70325484 |
G |
A |
EMS_canonical_SNV | CDS_variant | 1 | B73 |
Chr2:70325536 |
G |
A |
EMS_canonical_SNV | CDS_variant | 2 | A18,C43 |
Chr2:70325613 |
G |
A |
EMS_canonical_SNV | CDS_variant | 1 | B104 |
Chr2:70325625 |
G |
A |
EMS_canonical_SNV | CDS_variant | 1 | D10 |
Chr2:70325670 |
C |
T |
EMS_canonical_SNV | stop_gained | 1 | B140 |
Chr2:70325670 |
C |
T |
EMS_canonical_SNV | CDS_variant | 1 | B140 |
Chr2:70325734 |
C |
T |
EMS_canonical_SNV | CDS_variant | 2 | B122,D6 |
Chr2:70325805 |
G |
A |
EMS_canonical_SNV | CDS_variant | 1 | C43 |
Chr2:70325861 |
GC |
G |
1bp_deletion | frameshift_variant | 20 | A7,B103,B106,B107,B109,B119,B120,B121,B134,B18,B29,B30,B34,B40,B84,C12,C15,C50,C51,D1 |
Chr2:70325919 |
ATT |
A |
2bp_deletion | frameshift_variant | 7 | B23,B28,B67,B91,C36,C44,C74 |
Chr2:70325923 |
G |
A |
EMS_canonical_SNV | stop_gained | 17 | A5,B121,B126,B129,B130,B138,B37,B48,B55,B75,B81,B89,C18,C55,C64,C66,C71 |
Chr2:70325992 |
C |
T |
EMS_canonical_SNV | CDS_variant | 1 | C43 |
结构域结果来自 Pfam-A HMM 数据库和 HMMER hmmscan；位置为对应蛋白序列上的氨基酸坐标。
XP_057791849.1PF00931
NB-ARC 145-307 aa
PF13401
AAA_22 161-248 aa
PF23559
WHD_DRP 404-474 aa
PF13855
LRR_8 526-582 aa
PF23247
LRR_RPS2 823-933 aa
| Protein ID | 来源 | 结构域编号 | 结构域名称 | 类型 | 起始 aa | 终止 aa | E-value | Score | 说明 |
|---|---|---|---|---|---|---|---|---|---|
XP_057791849.1 |
Pfam | PF00931 |
NB-ARC | Domain | 145 | 307 | 1.8e-36 | 126.0 | NB-ARC domain |
XP_057791849.1 |
Pfam | PF13401 |
AAA_22 | Domain | 161 | 248 | 1.5e-07 | 32.5 | AAA domain |
XP_057791849.1 |
Pfam | PF23559 |
WHD_DRP | Domain | 404 | 474 | 2e-11 | 44.5 | Disease resistance protein Winged helix domain |
XP_057791849.1 |
Pfam | PF13855 |
LRR_8 | Repeat | 526 | 582 | 1.6e-13 | 50.9 | Leucine rich repeat |
XP_057791849.1 |
Pfam | PF23247 |
LRR_RPS2 | Repeat | 823 | 933 | 1.3e-13 | 52.0 | Plant disease resistance protein RPS2-like, leucine-rich repeats |
每个公开基因均提供参考注释对应的转录本序列；蛋白编码基因另提供 CDS 和蛋白序列。非编码 RNA 不适用 CDS 或蛋白下载。真实 accession 的版本后缀予以保留。
1 records
下载 cDNA FASTA1 records
下载 CDS FASTA1 records
下载 Protein FASTAupstream/downstream 最大各 10000 bp。负链基因会自动反向互补，使最终 FASTA 为转录方向 5′→3′。