当前解析结果
SmilChr02G004822| 统一新 Gene ID | SmilChr02G004822 |
|---|---|
| 名称 | SmilChr02G004822 |
| 描述 | uncharacterized SmilChr02G004822 |
| 染色体 / SeqID | Chr02 / NC_080388.1 |
| 坐标与链方向 | 70328542 - 70332854 / - |
| NCBI Gene ID | LOC131008813 |
|---|---|
| GeneID | 131008813 |
| locus_tag | - |
| NCBI Name | LOC131008813 |
| 原始查询 | SmilChr02G004822 |
| 来源 | GFF basic annotation; NCBI GO GAF; Pfam-A/HMMER; Arabidopsis/Rice homolog |
|---|---|
| 描述 | uncharacterized protein [Source:NCBI gene (formerly Entrezgene);Acc:836225]; symbol=AT5G61040; hit=AT5G61040; species=arabidopsis; confidence=low |
| 产物 | uncharacterized protein [Source:NCBI gene (formerly Entrezgene);Acc:836225]; symbol=AT5G61040; hit=AT5G61040; species=arabidopsis; confidence=low |
| Arabidopsis | AT5G61040 (AT5G61040)uncharacterized protein [Source:NCBI gene (formerly Entrezgene);Acc:836225] identity=32.5; qcov=1.04; evalue=6.98e-72; confidence=low |
| Rice | Os12g0576300- identity=32.2; qcov=0.798; evalue=7.56e-49; confidence=low |
| GO | GO:0008356 (asymmetric cell division) |
| KEGG | - |
| Pfam | PF30915 (POLAR) |
| InterPro | - |
| eggNOG | - |
| NR | GeneID:131008813 |
| Rank | 定位位置 | 中文 | Score | Protein ID |
|---|---|---|---|---|
| 1 | Nucleus membrane | 核膜 | 0.40000 | XP_057791850.1 |
| 2 | Nucleus | 细胞核 | 0.20000 | XP_057791850.1 |
| 3 | Endoplasmic reticulum | 内质网 | 0.20000 | XP_057791850.1 |
| 4 | Endoplasmic reticulum membrane | 内质网膜 | 0.20000 | XP_057791850.1 |
| 5 | Peroxisome | 过氧化物酶体 | 0.20000 | XP_057791850.1 |
下表显示该基因在丹参 EMS 材料中的前 12 个候选突变;完整结果可进入 EMS 突变库继续筛选或下载。
| 位置 | REF | ALT | 类型 | 影响 | 携带材料数 | 材料 |
|---|---|---|---|---|---|---|
Chr2:70328724 |
C |
T |
EMS_canonical_SNV | CDS_variant | 1 | B104 |
Chr2:70328810 |
C |
T |
EMS_canonical_SNV | CDS_variant | 1 | B98 |
Chr2:70328821 |
G |
A |
EMS_canonical_SNV | CDS_variant | 5 | A11,B117,B76,C61,D2 |
Chr2:70328849 |
G |
A |
EMS_canonical_SNV | CDS_variant | 3 | B34,B64,C5 |
Chr2:70328943 |
G |
A |
EMS_canonical_SNV | CDS_variant | 1 | B138 |
Chr2:70329055 |
C |
T |
EMS_canonical_SNV | CDS_variant | 1 | B104 |
Chr2:70329057 |
C |
T |
EMS_canonical_SNV | CDS_variant | 1 | B13 |
Chr2:70329100 |
C |
T |
EMS_canonical_SNV | CDS_variant | 1 | B140 |
Chr2:70329116 |
G |
A |
EMS_canonical_SNV | CDS_variant | 2 | B135,B66 |
Chr2:70329137 |
C |
T |
EMS_canonical_SNV | CDS_variant | 1 | D11 |
Chr2:70329175 |
C |
T |
EMS_canonical_SNV | CDS_variant | 4 | B109,B125,B89,C58 |
Chr2:70329242 |
C |
T |
EMS_canonical_SNV | CDS_variant | 2 | B90,B92 |
结构域结果来自 Pfam-A HMM 数据库和 HMMER hmmscan;位置为对应蛋白序列上的氨基酸坐标。
XP_057791850.1PF30915
POLAR 280-519 aa
XP_057791851.1PF30915
POLAR 282-517 aa
| Protein ID | 来源 | 结构域编号 | 结构域名称 | 类型 | 起始 aa | 终止 aa | E-value | Score | 说明 |
|---|---|---|---|---|---|---|---|---|---|
XP_057791850.1 |
Pfam | PF30915 |
POLAR | Family | 280 | 519 | 2.8e-15 | 56.8 | POLAR asymmetric cell division scaffold |
XP_057791851.1 |
Pfam | PF30915 |
POLAR | Family | 282 | 517 | 1e-14 | 55.0 | POLAR asymmetric cell division scaffold |
每个公开基因均提供参考注释对应的转录本序列;蛋白编码基因另提供 CDS 和蛋白序列。非编码 RNA 不适用 CDS 或蛋白下载。真实 accession 的版本后缀予以保留。
2 records
下载 cDNA FASTA2 records
下载 CDS FASTA2 records
下载 Protein FASTAupstream/downstream 最大各 10000 bp。负链基因会自动反向互补,使最终 FASTA 为转录方向 5′→3′。