Gene Card 基因详情

支持统一新 ID、NCBI Gene ID、GeneID、locus_tag、Transcript ID、Protein ID,以及已人工核对的文献基因名查询。页面会先解析到丹参统一基因,再整合坐标、序列、注释、亚细胞定位、EMS 突变和下载入口。
示例

当前解析结果

SmilChr02G004822

染色体: Chr02 坐标: 70328542-70332854 链方向: - 类型: protein_coding

基本信息

统一新 Gene IDSmilChr02G004822
名称SmilChr02G004822
描述uncharacterized SmilChr02G004822
染色体 / SeqIDChr02 / NC_080388.1
坐标与链方向70328542 - 70332854 / -

ID 对照

NCBI Gene IDLOC131008813
GeneID131008813
locus_tag-
NCBI NameLOC131008813
原始查询SmilChr02G004822

查看完整 ID 对照表

功能注释

来源GFF basic annotation; NCBI GO GAF; Pfam-A/HMMER; Arabidopsis/Rice homolog
描述uncharacterized protein [Source:NCBI gene (formerly Entrezgene);Acc:836225]; symbol=AT5G61040; hit=AT5G61040; species=arabidopsis; confidence=low
产物uncharacterized protein [Source:NCBI gene (formerly Entrezgene);Acc:836225]; symbol=AT5G61040; hit=AT5G61040; species=arabidopsis; confidence=low
ArabidopsisAT5G61040 (AT5G61040)
uncharacterized protein [Source:NCBI gene (formerly Entrezgene);Acc:836225]
identity=32.5; qcov=1.04; evalue=6.98e-72; confidence=low
RiceOs12g0576300
-
identity=32.2; qcov=0.798; evalue=7.56e-49; confidence=low
GOGO:0008356 (asymmetric cell division)
KEGG-
PfamPF30915 (POLAR)
InterPro-
eggNOG-
NRGeneID:131008813

打开注释模块

亚细胞定位 Top 5

Rank定位位置中文ScoreProtein ID
1 Nucleus membrane 核膜 0.40000 XP_057791850.1
2 Nucleus 细胞核 0.20000 XP_057791850.1
3 Endoplasmic reticulum 内质网 0.20000 XP_057791850.1
4 Endoplasmic reticulum membrane 内质网膜 0.20000 XP_057791850.1
5 Peroxisome 过氧化物酶体 0.20000 XP_057791850.1

进入亚细胞定位查询

EMS 诱变突变

下表显示该基因在丹参 EMS 材料中的前 12 个候选突变;完整结果可进入 EMS 突变库继续筛选或下载。

位置 REF ALT 类型 影响 携带材料数 材料
Chr2:70328724 C T EMS_canonical_SNV CDS_variant 1 B104
Chr2:70328810 C T EMS_canonical_SNV CDS_variant 1 B98
Chr2:70328821 G A EMS_canonical_SNV CDS_variant 5 A11,B117,B76,C61,D2
Chr2:70328849 G A EMS_canonical_SNV CDS_variant 3 B34,B64,C5
Chr2:70328943 G A EMS_canonical_SNV CDS_variant 1 B138
Chr2:70329055 C T EMS_canonical_SNV CDS_variant 1 B104
Chr2:70329057 C T EMS_canonical_SNV CDS_variant 1 B13
Chr2:70329100 C T EMS_canonical_SNV CDS_variant 1 B140
Chr2:70329116 G A EMS_canonical_SNV CDS_variant 2 B135,B66
Chr2:70329137 C T EMS_canonical_SNV CDS_variant 1 D11
Chr2:70329175 C T EMS_canonical_SNV CDS_variant 4 B109,B125,B89,C58
Chr2:70329242 C T EMS_canonical_SNV CDS_variant 2 B90,B92

进入 EMS 突变库

预测功能结构域

结构域结果来自 Pfam-A HMM 数据库和 HMMER hmmscan;位置为对应蛋白序列上的氨基酸坐标。

XP_057791850.1
678 aa
N
1
339
678
POLAR
C
PF30915 POLAR 280-519 aa
XP_057791851.1
677 aa
N
1
338
677
POLAR
C
PF30915 POLAR 282-517 aa
Protein ID 来源 结构域编号 结构域名称 类型 起始 aa 终止 aa E-value Score 说明
XP_057791850.1 Pfam PF30915 POLAR Family 280 519 2.8e-15 56.8 POLAR asymmetric cell division scaffold
XP_057791851.1 Pfam PF30915 POLAR Family 282 517 1e-14 55.0 POLAR asymmetric cell division scaffold

cDNA / CDS / Protein 序列

下载基因组 DNA(仅基因区域)

每个公开基因均提供参考注释对应的转录本序列;蛋白编码基因另提供 CDS 和蛋白序列。非编码 RNA 不适用 CDS 或蛋白下载。真实 accession 的版本后缀予以保留。

cDNA

2 records

下载 cDNA FASTA
XM_057935868.1
AGAGACAAGTAGCCTACTTCCGCCTTCTTCTTCTTTTTTCGGCCCACTCCTCTCTCTCTCTCTCTCTCTCTCACACACACACACACACACAGAGAGACACACACCATTTCTATCTCACTCTCACCAACTTATAACATTGTTGCTCTATCCTTTTCTCATTAAATCCCACCCATAATTCAACTTCAATCCTCATTTTACTATTTCTCCCCTCTTCTTCTAGTTTACCGGGAGGAATTAGGTTTGACTAGTTGAATATCTCG...
XM_057935867.1
CTTCCGCCTTCTTCTTCTTTTTTCGGCCCACTCCTCTCTCTCTCTCTCTCTCTCTCACACACACACACACACACAGAGAGACACACACCATTTCTATCTCACTCTCACCAACTTATAACATTGTTGCTCTATCCTTTTCTCATTAAATCCCACCCATAATTCAACTTCAATCCTCATTTTACTATTTCTCCCCTCTTCTTCTAGTTTACCGGGAGGAATTAGGTTTGACTAGTTGAATATCTCGAAAGCAATTAAGCAGG...

CDS

2 records

下载 CDS FASTA
LOC131008813
ATGGATGTGTGGGTAGTTGCAGCAGCTGCTGGTGCTGGTTATGTAGTCCAGCATCTAAAGAATCTCAGCAGGGGTAAGAATAAATGGGTAGATTCATCGTCTGAGAACCTTAATAGTGTTACACCTCAGTCCTCCAGTAGTAGACACAAGCTCGGGGACAAGAGTGGTCCATTTAACAATGTGTTGTCGAGGAAAAGTTTTGGGGAGGAAATGTCCAACAGAGAAGGAGACAAGGTTTGTGAAGCTGCTTCTGACTTTGA...
LOC131008813
ATGGATGTGTGGGTAGTTGCAGCAGCTGCTGGTGCTGGTTATGTAGTCCAGCATCTAAAGAATCTCAGCAGGGGTAAGAATAAATGGGTAGATTCATCGTCTGAGAACCTTAATAGTGTTACACCTCAGTCCTCCAGTAGTAGACACAAGCTCGGGGACAAGAGTGGTCCATTTAACAATGTGTTGTCGAGGAAAAGTTTTGGGGAGGAAATGTCCAACAGAGAAGGAGACAAGGTTTGTGAAGCTGCTTCTGACTTTGA...

Protein

2 records

下载 Protein FASTA
XP_057791850.1
MDVWVVAAAAGAGYVVQHLKNLSRGKNKWVDSSSENLNSVTPQSSSSRHKLGDKSGPFNNVLSRKSFGEEMSNREGDKVCEAASDFEVTSTSGYEDENLIMVDSFMSSSSLAPYLDVEDVQGDWESRLPSDSGKGFTSDMSPHPSSGEIGFSYSSRRKRSRLKSRRFDSEFIKPQTSLESCLMAQLYEEHNESEEYALHPLGKPRLRPFLVTDGSKIISTAPHESFTVPIGTAGGKSRLWKDGYSKVNSTVCGIPALPYI...
XP_057791851.1
MDVWVVAAAAGAGYVVQHLKNLSRGKNKWVDSSSENLNSVTPQSSSSRHKLGDKSGPFNNVLSRKSFGEEMSNREGDKVCEAASDFEVTSTSGYEDENLIMVDSFMSSSSLAPYLDVEDVQGDWESRLPSDSGKGFTSDMSPHPSSGEIGFSYSSRRKRSRLKSRRFDSEFIKPQTSLESCLMAQLYEEHNESEEYALHPLGKPRLRPFLVTDGSKIISTAPHESFTVPIGTAGGKSRLWKDGYSKVNSTVCGIPALPYI...

上下游序列下载

upstream/downstream 最大各 10000 bp。负链基因会自动反向互补,使最终 FASTA 为转录方向 5′→3′。

下载 upstream 下载 downstream 下载 upstream + gene + downstream

JBrowse

跳转到基因组浏览器