当前解析结果
SmilChr02G004825| 统一新 Gene ID | SmilChr02G004825 |
|---|---|
| 名称 | SmilChr02G004825 |
| 描述 | UDP-glucose:glycoprotein glucosyltransferase |
| 染色体 / SeqID | Chr02 / NC_080388.1 |
| 坐标与链方向 | 70350159 - 70369004 / + |
| NCBI Gene ID | LOC131008817 |
|---|---|
| GeneID | 131008817 |
| locus_tag | - |
| NCBI Name | LOC131008817 |
| 原始查询 | SmilChr02G004825 |
| 来源 | GFF basic annotation; NCBI GO GAF; KEGG smil; Pfam-A/HMMER; Arabidopsis/Rice homolog |
|---|---|
| 描述 | UDP-glucose:glycoprotein glucosyltransferase |
| 产物 | UDP-glucose:glycoprotein glucosyltransferase |
| Arabidopsis | AT1G71220 (EBS1)EMS-MUTAGENIZED BRI1 SUPPRESSOR 1 [Source:NCBI gene (formerly Entrezgene);Acc:843462] identity=69.1; qcov=1.01; evalue=0; confidence=high |
| Rice | Os02g0664100- identity=69.8; qcov=0.314; evalue=0; confidence=low |
| GO | GO:0003980 (UDP-glucose:glycoprotein glucosyltransferase activity); GO:0005783 (endoplasmic reticulum); GO:0018279 (GO:0018279); GO:0051082 (GO:0051082); GO:0071712 (GO:0071712) |
| KEGG | smil04141 (Protein processing in endoplasmic reticulum - Salvia miltiorrhiza (redroot sage)) |
| Pfam | PF01501 (Glyco_transf_8); PF06427 (UDP-g_GGTase); PF18400 (Thioredoxin_12); PF18401 (Thioredoxin_13); PF18402 (Thioredoxin_14); PF18403 (Thioredoxin_15); PF18404 (Glyco_transf_24) |
| InterPro | - |
| eggNOG | - |
| NR | GeneID:131008817 |
| Rank | 定位位置 | 中文 | Score | Protein ID |
|---|---|---|---|---|
| 1 | Endoplasmic reticulum | 内质网 | 1.00000 | XP_057791854.1 |
| 2 | Endoplasmic reticulum lumen | 内质网腔 | 0.80000 | XP_057791854.1 |
| 3 | Golgi apparatus | 高尔基体 | 0.40000 | XP_057791854.1 |
| 4 | Nucleus | 细胞核 | 0.00000 | XP_057791854.1 |
| 5 | Chromosome | 染色体 | 0.00000 | XP_057791854.1 |
下表显示该基因在丹参 EMS 材料中的前 12 个候选突变；完整结果可进入 EMS 突变库继续筛选或下载。
| 位置 | REF | ALT | 类型 | 影响 | 携带材料数 | 材料 |
|---|---|---|---|---|---|---|
Chr2:70350466 |
C |
T |
EMS_canonical_SNV | CDS_variant | 1 | B35 |
Chr2:70351107 |
G |
A |
EMS_canonical_SNV | CDS_variant | 4 | B60,B79,C4,D1 |
Chr2:70351352 |
C |
T |
EMS_canonical_SNV | CDS_variant | 1 | C40 |
Chr2:70351562 |
G |
A |
EMS_canonical_SNV | CDS_variant | 2 | B107,B130 |
Chr2:70352286 |
C |
T |
EMS_canonical_SNV | CDS_variant | 1 | B35 |
Chr2:70352332 |
C |
T |
EMS_canonical_SNV | CDS_variant | 2 | B31,C38 |
Chr2:70353940 |
G |
A |
EMS_canonical_SNV | CDS_variant | 1 | B73 |
Chr2:70356035 |
G |
A |
EMS_canonical_SNV | CDS_variant | 5 | A4,B118,B24,B33,C75 |
Chr2:70356081 |
C |
T |
EMS_canonical_SNV | CDS_variant | 1 | B33 |
Chr2:70356443 |
C |
T |
EMS_canonical_SNV | CDS_variant | 1 | B35 |
Chr2:70356534 |
C |
T |
EMS_canonical_SNV | CDS_variant | 5 | A9,B16,C1,C63,C7 |
Chr2:70356583 |
G |
A |
EMS_canonical_SNV | CDS_variant | 1 | C47 |
结构域结果来自 Pfam-A HMM 数据库和 HMMER hmmscan；位置为对应蛋白序列上的氨基酸坐标。
XP_057791854.1PF18400
Thioredoxin_12 48-267 aa
PF18401
Thioredoxin_13 354-470 aa
PF18402
Thioredoxin_14 483-746 aa
PF18403
Thioredoxin_15 768-1007 aa
PF06427
UDP-g_GGTase 1168-1271 aa
PF18404
Glyco_transf_24 1328-1593 aa
PF01501
Glyco_transf_8 1339-1559 aa
XP_057791855.1PF18400
Thioredoxin_12 48-267 aa
PF18401
Thioredoxin_13 354-470 aa
PF18402
Thioredoxin_14 483-746 aa
PF18403
Thioredoxin_15 768-1007 aa
PF06427
UDP-g_GGTase 1168-1271 aa
PF18404
Glyco_transf_24 1328-1593 aa
PF01501
Glyco_transf_8 1339-1559 aa
| Protein ID | 来源 | 结构域编号 | 结构域名称 | 类型 | 起始 aa | 终止 aa | E-value | Score | 说明 |
|---|---|---|---|---|---|---|---|---|---|
XP_057791854.1 |
Pfam | PF18400 |
Thioredoxin_12 | Domain | 48 | 267 | 8.5e-51 | 173.3 | Thioredoxin-like domain |
XP_057791854.1 |
Pfam | PF18401 |
Thioredoxin_13 | Domain | 354 | 470 | 2.8e-33 | 115.4 | Thioredoxin-like domain |
XP_057791854.1 |
Pfam | PF18402 |
Thioredoxin_14 | Domain | 483 | 746 | 1e-60 | 206.6 | Thioredoxin-like domain |
XP_057791854.1 |
Pfam | PF18403 |
Thioredoxin_15 | Domain | 768 | 1007 | 3.3e-44 | 152.1 | Thioredoxin-like domain |
XP_057791854.1 |
Pfam | PF06427 |
UDP-g_GGTase | Domain | 1168 | 1271 | 7.9e-29 | 100.6 | UDP-glucose:Glycoprotein Glucosyltransferase |
XP_057791854.1 |
Pfam | PF18404 |
Glyco_transf_24 | Domain | 1328 | 1593 | 1.7e-144 | 480.9 | Glucosyltransferase 24 |
XP_057791854.1 |
Pfam | PF01501 |
Glyco_transf_8 | Family | 1339 | 1559 | 4.1e-07 | 30.6 | Glycosyl transferase family 8 |
XP_057791855.1 |
Pfam | PF18400 |
Thioredoxin_12 | Domain | 48 | 267 | 8.5e-51 | 173.3 | Thioredoxin-like domain |
XP_057791855.1 |
Pfam | PF18401 |
Thioredoxin_13 | Domain | 354 | 470 | 2.8e-33 | 115.4 | Thioredoxin-like domain |
XP_057791855.1 |
Pfam | PF18402 |
Thioredoxin_14 | Domain | 483 | 746 | 1e-60 | 206.6 | Thioredoxin-like domain |
XP_057791855.1 |
Pfam | PF18403 |
Thioredoxin_15 | Domain | 768 | 1007 | 3.3e-44 | 152.1 | Thioredoxin-like domain |
XP_057791855.1 |
Pfam | PF06427 |
UDP-g_GGTase | Domain | 1168 | 1271 | 7.9e-29 | 100.6 | UDP-glucose:Glycoprotein Glucosyltransferase |
XP_057791855.1 |
Pfam | PF18404 |
Glyco_transf_24 | Domain | 1328 | 1593 | 1.7e-144 | 480.9 | Glucosyltransferase 24 |
XP_057791855.1 |
Pfam | PF01501 |
Glyco_transf_8 | Family | 1339 | 1559 | 4.1e-07 | 30.6 | Glycosyl transferase family 8 |
每个公开基因均提供参考注释对应的转录本序列；蛋白编码基因另提供 CDS 和蛋白序列。非编码 RNA 不适用 CDS 或蛋白下载。真实 accession 的版本后缀予以保留。
2 records
下载 cDNA FASTA2 records
下载 CDS FASTA2 records
下载 Protein FASTAupstream/downstream 最大各 10000 bp。负链基因会自动反向互补，使最终 FASTA 为转录方向 5′→3′。